Wall clock time and date at job start Mon Mar 30 2020 05:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86802 * 119.99796 * 2 1 4 4 H 1.48495 * 109.46871 * 269.99427 * 3 2 1 5 5 H 1.48494 * 109.47167 * 29.99772 * 3 2 1 6 6 H 1.48501 * 109.46842 * 149.99580 * 3 2 1 7 7 C 1.37869 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00215 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00166 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47048 * 59.99873 * 9 7 2 11 11 N 1.46897 * 109.46962 * 299.99652 * 9 7 2 12 12 C 1.50707 * 109.47037 * 179.97438 * 9 7 2 13 13 C 1.38638 * 119.95879 * 73.16748 * 12 9 7 14 14 O 1.35634 * 120.15194 * 359.95456 * 13 12 9 15 15 C 1.40243 * 119.70094 * 179.97438 * 13 12 9 16 16 C 1.47335 * 120.18340 * 179.72095 * 15 13 12 17 17 O 1.21525 * 119.99765 * 0.02562 * 16 15 13 18 18 O 1.34758 * 119.99950 * 179.97438 * 16 15 13 19 19 C 1.39805 * 119.63199 * 359.97438 * 15 13 12 20 20 C 1.37698 * 119.91883 * 0.02562 * 19 15 13 21 21 C 1.38202 * 119.96037 * 253.14411 * 12 9 7 22 22 Cl 1.73607 * 119.81419 * 0.02562 * 21 12 9 23 23 H 0.97000 * 119.99572 * 0.02562 * 1 2 3 24 24 H 1.00908 * 110.99955 * 308.07370 * 11 9 7 25 25 H 1.00893 * 111.00245 * 72.02637 * 11 9 7 26 26 H 0.96700 * 113.99696 * 270.02256 * 14 13 12 27 27 H 0.96702 * 117.00129 * 180.02562 * 18 16 15 28 28 H 1.08008 * 120.03979 * 179.97438 * 19 15 13 29 29 H 1.08003 * 119.85765 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 0.4061 -2.5767 1.1997 12 6 2.2304 -3.6446 0.0005 13 6 2.9447 -3.9448 1.1502 14 8 2.7649 -3.2092 2.2755 15 6 3.8542 -5.0122 1.1443 16 6 4.6234 -5.3367 2.3583 17 8 4.4702 -4.6789 3.3686 18 8 5.4960 -6.3636 2.3487 19 6 4.0309 -5.7634 -0.0215 20 6 3.3134 -5.4517 -1.1547 21 6 2.4150 -4.3948 -1.1454 22 17 1.5170 -4.0128 -2.5812 23 1 -0.4849 0.8401 -0.0004 24 1 0.9442 -2.3940 2.0336 25 1 -0.3787 -1.9464 1.1305 26 1 3.3556 -2.4468 2.3454 27 1 5.9773 -6.5384 3.1690 28 1 4.7300 -6.5866 -0.0335 29 1 3.4510 -6.0324 -2.0548 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095769898.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:27 Heat of formation + Delta-G solvation = -116.154785 kcal Electronic energy + Delta-G solvation = -18770.985511 eV Core-core repulsion = 15491.998811 eV Total energy + Delta-G solvation = -3278.986700 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.044 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.37873 -38.94043 -36.67604 -35.84125 -35.57431 -34.58758 -31.71943 -30.22008 -29.18341 -25.94551 -24.32653 -23.22917 -21.15408 -20.39335 -17.95706 -17.70225 -16.79293 -16.58243 -15.71081 -15.62484 -15.22118 -14.79173 -14.20068 -13.63860 -13.59464 -13.08438 -12.74405 -12.52278 -12.17951 -11.64053 -11.53149 -11.46232 -11.09625 -10.91019 -10.82417 -10.58389 -10.49426 -10.11653 -10.00437 -9.43686 -8.66495 -8.41649 -8.18731 -7.15485 -6.13724 -4.31335 0.82667 1.59968 2.53458 2.74545 3.15549 3.19092 3.26978 3.28471 3.88169 4.27870 4.60335 5.00344 5.09377 5.24281 5.39500 5.62730 5.80365 6.15598 6.24294 6.46010 6.54288 6.59807 6.77961 6.98674 7.55904 7.65533 8.00809 8.05638 8.20298 8.64531 8.95983 9.21535 9.42254 10.83847 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.017499 B = 0.007907 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.698749 B = 3540.399997 C = 4532.451849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.072 3.928 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.240 3.760 10 H 0.063 0.937 11 N -0.849 5.849 12 C -0.058 4.058 13 C 0.206 3.794 14 O -0.460 6.460 15 C -0.171 4.171 16 C 0.527 3.473 17 O -0.499 6.499 18 O -0.519 6.519 19 C -0.062 4.062 20 C -0.142 4.142 21 C 0.007 3.993 22 Cl -0.055 7.055 23 H 0.266 0.734 24 H 0.330 0.670 25 H 0.349 0.651 26 H 0.395 0.605 27 H 0.409 0.591 28 H 0.141 0.859 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.138 -9.887 -0.521 12.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.132 4.132 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.130 3.870 10 H 0.080 0.920 11 N -0.382 5.382 12 C -0.060 4.060 13 C 0.159 3.841 14 O -0.271 6.271 15 C -0.173 4.173 16 C 0.371 3.629 17 O -0.387 6.387 18 O -0.331 6.331 19 C -0.081 4.081 20 C -0.161 4.161 21 C -0.020 4.020 22 Cl -0.026 7.026 23 H 0.076 0.924 24 H 0.144 0.856 25 H 0.164 0.836 26 H 0.254 0.746 27 H 0.267 0.733 28 H 0.158 0.842 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.074 -10.620 -0.798 12.785 hybrid contribution 1.376 2.242 0.340 2.653 sum 8.450 -8.378 -0.458 11.908 Atomic orbital electron populations 1.69776 1.05850 1.27299 1.49573 1.24949 0.94906 0.99148 0.94163 0.86526 0.79767 0.83053 0.78249 1.20544 1.21099 1.19893 1.21639 0.93162 0.90906 1.52913 0.93027 1.18051 0.89089 0.86708 0.93138 0.91965 1.59451 1.13982 1.60093 1.04693 1.20860 0.98342 0.97270 0.89519 1.18050 0.90262 0.89934 0.85879 1.84629 1.62278 1.43197 1.37012 1.19525 1.02010 1.02756 0.93046 1.20709 0.77008 0.77120 0.88024 1.90922 1.64065 1.49867 1.33877 1.84574 1.53625 1.50323 1.44578 1.21010 0.98071 0.98362 0.90626 1.20885 0.97894 0.97937 0.99374 1.20984 0.95932 0.96114 0.88990 1.98358 1.73860 1.93849 1.36527 0.92381 0.85616 0.83599 0.74554 0.73344 0.84164 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.78 11.67 55.43 0.65 -23.13 15 2 C 0.07 1.86 5.39 -17.82 -0.10 1.77 15 3 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 15 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 7 C -0.55 -13.89 8.35 -34.44 -0.29 -14.18 15 8 H 0.05 1.30 7.74 -52.49 -0.41 0.90 15 9 C 0.24 5.77 2.63 -70.01 -0.18 5.59 15 10 H 0.06 1.62 6.30 -51.93 -0.33 1.29 15 11 N -0.85 -20.45 8.92 -6.65 -0.06 -20.51 15 12 C -0.06 -1.21 4.90 -104.48 -0.51 -1.72 15 13 C 0.21 4.02 6.47 -38.68 -0.25 3.77 15 14 O -0.46 -9.10 8.43 -40.49 -0.34 -9.44 15 15 C -0.17 -2.87 5.89 -104.86 -0.62 -3.49 15 16 C 0.53 8.19 8.26 34.43 0.28 8.48 15 17 O -0.50 -9.06 15.95 -26.61 -0.42 -9.49 15 18 O -0.52 -5.83 12.68 -40.65 -0.52 -6.35 15 19 C -0.06 -0.88 9.61 -39.19 -0.38 -1.26 15 20 C -0.14 -2.11 9.80 -39.60 -0.39 -2.50 15 21 C 0.01 0.14 6.32 -39.42 -0.25 -0.11 15 22 Cl -0.06 -0.99 27.02 -51.86 -1.40 -2.39 15 23 H 0.27 6.86 8.31 -40.82 -0.34 6.53 15 24 H 0.33 7.82 6.31 -39.29 -0.25 7.57 15 25 H 0.35 8.91 7.34 -39.30 -0.29 8.63 15 26 H 0.40 6.93 9.06 45.56 0.41 7.35 15 27 H 0.41 2.65 9.11 45.56 0.42 3.07 15 28 H 0.14 1.58 7.61 -52.48 -0.40 1.18 15 29 H 0.14 1.59 8.06 -52.48 -0.42 1.17 15 LS Contribution 272.97 15.07 4.11 4.11 Total: -1.00 -29.60 272.97 -6.08 -35.68 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -0.40 Total: 19.89 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -2.68 Total: -3.67 kcal Atomic # 7 Polarization: -44.23 SS G_CDS: 0.59 Total: -43.64 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -1.28 Total: -25.28 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.40 Total: -2.39 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.60 -6.08 -35.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095769898.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.477 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds