Wall clock time and date at job start Mon Mar 30 2020 05:37:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31522 * 1
3 3 Si 1.86802 * 119.99796 * 2 1
4 4 H 1.48495 * 109.46871 * 269.99427 * 3 2 1
5 5 H 1.48494 * 109.47167 * 29.99772 * 3 2 1
6 6 H 1.48501 * 109.46842 * 149.99580 * 3 2 1
7 7 C 1.37869 * 119.99871 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00215 * 180.02562 * 7 2 1
9 9 C 1.50704 * 120.00166 * 0.02562 * 7 2 1
10 10 H 1.08998 * 109.47048 * 59.99873 * 9 7 2
11 11 N 1.46897 * 109.46962 * 299.99652 * 9 7 2
12 12 C 1.50707 * 109.47037 * 179.97438 * 9 7 2
13 13 C 1.38638 * 119.95879 * 73.16748 * 12 9 7
14 14 O 1.35634 * 120.15194 * 359.95456 * 13 12 9
15 15 C 1.40243 * 119.70094 * 179.97438 * 13 12 9
16 16 C 1.47335 * 120.18340 * 179.72095 * 15 13 12
17 17 O 1.21525 * 119.99765 * 0.02562 * 16 15 13
18 18 O 1.34758 * 119.99950 * 179.97438 * 16 15 13
19 19 C 1.39805 * 119.63199 * 359.97438 * 15 13 12
20 20 C 1.37698 * 119.91883 * 0.02562 * 19 15 13
21 21 C 1.38202 * 119.96037 * 253.14411 * 12 9 7
22 22 Cl 1.73607 * 119.81419 * 0.02562 * 21 12 9
23 23 H 0.97000 * 119.99572 * 0.02562 * 1 2 3
24 24 H 1.00908 * 110.99955 * 308.07370 * 11 9 7
25 25 H 1.00893 * 111.00245 * 72.02637 * 11 9 7
26 26 H 0.96700 * 113.99696 * 270.02256 * 14 13 12
27 27 H 0.96702 * 117.00129 * 180.02562 * 18 16 15
28 28 H 1.08008 * 120.03979 * 179.97438 * 19 15 13
29 29 H 1.08003 * 119.85765 * 179.97438 * 20 19 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 2.4967 2.0463 -1.4000
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4402 0.7001
7 6 2.0045 -1.1940 0.0005
8 1 3.0846 -1.1941 0.0010
9 6 1.2510 -2.4991 0.0005
10 1 0.6247 -2.5571 -0.8897
11 7 0.4061 -2.5767 1.1997
12 6 2.2304 -3.6446 0.0005
13 6 2.9447 -3.9448 1.1502
14 8 2.7649 -3.2092 2.2755
15 6 3.8542 -5.0122 1.1443
16 6 4.6234 -5.3367 2.3583
17 8 4.4702 -4.6789 3.3686
18 8 5.4960 -6.3636 2.3487
19 6 4.0309 -5.7634 -0.0215
20 6 3.3134 -5.4517 -1.1547
21 6 2.4150 -4.3948 -1.1454
22 17 1.5170 -4.0128 -2.5812
23 1 -0.4849 0.8401 -0.0004
24 1 0.9442 -2.3940 2.0336
25 1 -0.3787 -1.9464 1.1305
26 1 3.3556 -2.4468 2.3454
27 1 5.9773 -6.5384 3.1690
28 1 4.7300 -6.5866 -0.0335
29 1 3.4510 -6.0324 -2.0548
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000095769898.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:37:27
Heat of formation + Delta-G solvation = -116.154785 kcal
Electronic energy + Delta-G solvation = -18770.985511 eV
Core-core repulsion = 15491.998811 eV
Total energy + Delta-G solvation = -3278.986700 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 271.044 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.37873 -38.94043 -36.67604 -35.84125 -35.57431 -34.58758 -31.71943 -30.22008
-29.18341 -25.94551 -24.32653 -23.22917 -21.15408 -20.39335 -17.95706 -17.70225
-16.79293 -16.58243 -15.71081 -15.62484 -15.22118 -14.79173 -14.20068 -13.63860
-13.59464 -13.08438 -12.74405 -12.52278 -12.17951 -11.64053 -11.53149 -11.46232
-11.09625 -10.91019 -10.82417 -10.58389 -10.49426 -10.11653 -10.00437 -9.43686
-8.66495 -8.41649 -8.18731 -7.15485 -6.13724 -4.31335 0.82667 1.59968
2.53458 2.74545 3.15549 3.19092 3.26978 3.28471 3.88169 4.27870
4.60335 5.00344 5.09377 5.24281 5.39500 5.62730 5.80365 6.15598
6.24294 6.46010 6.54288 6.59807 6.77961 6.98674 7.55904 7.65533
8.00809 8.05638 8.20298 8.64531 8.95983 9.21535 9.42254 10.83847
Molecular weight = 271.04amu
Principal moments of inertia in cm(-1)
A = 0.017499 B = 0.007907 C = 0.006176
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1599.698749 B = 3540.399997 C = 4532.451849
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.887 5.887
2 C 0.072 3.928
3 Si 0.897 3.103
4 H -0.279 1.279
5 H -0.285 1.285
6 H -0.274 1.274
7 C -0.547 4.547
8 H 0.051 0.949
9 C 0.240 3.760
10 H 0.063 0.937
11 N -0.849 5.849
12 C -0.058 4.058
13 C 0.206 3.794
14 O -0.460 6.460
15 C -0.171 4.171
16 C 0.527 3.473
17 O -0.499 6.499
18 O -0.519 6.519
19 C -0.062 4.062
20 C -0.142 4.142
21 C 0.007 3.993
22 Cl -0.055 7.055
23 H 0.266 0.734
24 H 0.330 0.670
25 H 0.349 0.651
26 H 0.395 0.605
27 H 0.409 0.591
28 H 0.141 0.859
29 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.138 -9.887 -0.521 12.816
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.525 5.525
2 C -0.132 4.132
3 Si 0.724 3.276
4 H -0.205 1.205
5 H -0.211 1.211
6 H -0.199 1.199
7 C -0.586 4.586
8 H 0.070 0.930
9 C 0.130 3.870
10 H 0.080 0.920
11 N -0.382 5.382
12 C -0.060 4.060
13 C 0.159 3.841
14 O -0.271 6.271
15 C -0.173 4.173
16 C 0.371 3.629
17 O -0.387 6.387
18 O -0.331 6.331
19 C -0.081 4.081
20 C -0.161 4.161
21 C -0.020 4.020
22 Cl -0.026 7.026
23 H 0.076 0.924
24 H 0.144 0.856
25 H 0.164 0.836
26 H 0.254 0.746
27 H 0.267 0.733
28 H 0.158 0.842
29 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges 7.074 -10.620 -0.798 12.785
hybrid contribution 1.376 2.242 0.340 2.653
sum 8.450 -8.378 -0.458 11.908
Atomic orbital electron populations
1.69776 1.05850 1.27299 1.49573 1.24949 0.94906 0.99148 0.94163
0.86526 0.79767 0.83053 0.78249 1.20544 1.21099 1.19893 1.21639
0.93162 0.90906 1.52913 0.93027 1.18051 0.89089 0.86708 0.93138
0.91965 1.59451 1.13982 1.60093 1.04693 1.20860 0.98342 0.97270
0.89519 1.18050 0.90262 0.89934 0.85879 1.84629 1.62278 1.43197
1.37012 1.19525 1.02010 1.02756 0.93046 1.20709 0.77008 0.77120
0.88024 1.90922 1.64065 1.49867 1.33877 1.84574 1.53625 1.50323
1.44578 1.21010 0.98071 0.98362 0.90626 1.20885 0.97894 0.97937
0.99374 1.20984 0.95932 0.96114 0.88990 1.98358 1.73860 1.93849
1.36527 0.92381 0.85616 0.83599 0.74554 0.73344 0.84164 0.84696
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -23.78 11.67 55.43 0.65 -23.13 15
2 C 0.07 1.86 5.39 -17.82 -0.10 1.77 15
3 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 15
4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15
5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15
6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15
7 C -0.55 -13.89 8.35 -34.44 -0.29 -14.18 15
8 H 0.05 1.30 7.74 -52.49 -0.41 0.90 15
9 C 0.24 5.77 2.63 -70.01 -0.18 5.59 15
10 H 0.06 1.62 6.30 -51.93 -0.33 1.29 15
11 N -0.85 -20.45 8.92 -6.65 -0.06 -20.51 15
12 C -0.06 -1.21 4.90 -104.48 -0.51 -1.72 15
13 C 0.21 4.02 6.47 -38.68 -0.25 3.77 15
14 O -0.46 -9.10 8.43 -40.49 -0.34 -9.44 15
15 C -0.17 -2.87 5.89 -104.86 -0.62 -3.49 15
16 C 0.53 8.19 8.26 34.43 0.28 8.48 15
17 O -0.50 -9.06 15.95 -26.61 -0.42 -9.49 15
18 O -0.52 -5.83 12.68 -40.65 -0.52 -6.35 15
19 C -0.06 -0.88 9.61 -39.19 -0.38 -1.26 15
20 C -0.14 -2.11 9.80 -39.60 -0.39 -2.50 15
21 C 0.01 0.14 6.32 -39.42 -0.25 -0.11 15
22 Cl -0.06 -0.99 27.02 -51.86 -1.40 -2.39 15
23 H 0.27 6.86 8.31 -40.82 -0.34 6.53 15
24 H 0.33 7.82 6.31 -39.29 -0.25 7.57 15
25 H 0.35 8.91 7.34 -39.30 -0.29 8.63 15
26 H 0.40 6.93 9.06 45.56 0.41 7.35 15
27 H 0.41 2.65 9.11 45.56 0.42 3.07 15
28 H 0.14 1.58 7.61 -52.48 -0.40 1.18 15
29 H 0.14 1.59 8.06 -52.48 -0.42 1.17 15
LS Contribution 272.97 15.07 4.11 4.11
Total: -1.00 -29.60 272.97 -6.08 -35.68
By element:
Atomic # 1 Polarization: 20.29 SS G_CDS: -0.40 Total: 19.89 kcal
Atomic # 6 Polarization: -0.99 SS G_CDS: -2.68 Total: -3.67 kcal
Atomic # 7 Polarization: -44.23 SS G_CDS: 0.59 Total: -43.64 kcal
Atomic # 8 Polarization: -24.00 SS G_CDS: -1.28 Total: -25.28 kcal
Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal
Atomic # 17 Polarization: -0.99 SS G_CDS: -1.40 Total: -2.39 kcal
Total LS contribution 4.11 Total: 4.11 kcal
Total: -29.60 -6.08 -35.68 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000095769898.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -80.477 kcal
(2) G-P(sol) polarization free energy of solvation -29.601 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.078 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.077 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.678 kcal
(6) G-S(sol) free energy of system = (1) + (5) -116.155 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds