Wall clock time and date at job start Mon Mar 30 2020 05:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 110.99734 * 2 1 4 4 C 1.52999 * 109.47092 * 275.00033 * 3 2 1 5 5 C 1.53002 * 109.47295 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46945 * 59.99914 * 5 4 3 7 7 N 1.46904 * 109.46835 * 180.02562 * 6 5 4 8 8 C 1.46901 * 110.99816 * 303.95211 * 7 6 5 9 9 C 1.50697 * 109.46818 * 176.06164 * 8 7 6 10 10 H 1.07997 * 120.00762 * 354.90087 * 9 8 7 11 11 C 1.37881 * 119.99903 * 174.89673 * 9 8 7 12 12 N 1.31511 * 119.99976 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00159 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47178 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47386 * 119.99805 * 13 11 9 16 16 H 1.48499 * 109.47169 * 240.00134 * 13 11 9 17 17 C 1.46899 * 110.99875 * 179.97438 * 7 6 5 18 18 C 1.53000 * 109.46882 * 53.70822 * 17 7 6 19 19 O 1.42899 * 109.47368 * 67.15057 * 18 17 7 20 20 C 1.42905 * 114.00198 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.47194 * 300.00148 * 6 5 4 22 22 C 1.52998 * 109.46972 * 59.99921 * 21 6 5 23 23 H 1.08996 * 109.47183 * 59.99935 * 1 2 3 24 24 H 1.08993 * 109.47250 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46846 * 299.99953 * 1 2 3 26 26 H 1.00901 * 111.00281 * 123.95258 * 2 1 3 27 27 H 1.08995 * 109.47577 * 35.00233 * 3 2 1 28 28 H 1.09001 * 109.47384 * 60.00090 * 4 3 2 29 29 H 1.09005 * 109.47148 * 299.99995 * 4 3 2 30 30 H 1.09005 * 109.46807 * 299.99945 * 5 4 3 31 31 H 1.08995 * 109.47235 * 179.97438 * 5 4 3 32 32 H 1.08996 * 109.47047 * 60.00815 * 6 5 4 33 33 H 1.08993 * 109.47529 * 296.06260 * 8 7 6 34 34 H 1.09002 * 109.47235 * 56.06896 * 8 7 6 35 35 H 0.97000 * 119.99910 * 179.97438 * 12 11 9 36 36 H 1.09004 * 109.47071 * 173.70217 * 17 7 6 37 37 H 1.08996 * 109.47272 * 293.71023 * 17 7 6 38 38 H 1.08999 * 109.47292 * 187.15249 * 18 17 7 39 39 H 1.09001 * 109.47554 * 307.15441 * 18 17 7 40 40 H 1.09003 * 109.47008 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.46817 * 299.99852 * 20 19 18 42 42 H 1.09002 * 109.46786 * 60.00205 * 20 19 18 43 43 H 1.08996 * 109.46974 * 180.02562 * 21 6 5 44 44 H 1.09005 * 109.47148 * 300.00331 * 21 6 5 45 45 H 1.09005 * 109.46850 * 60.00227 * 22 21 6 46 46 H 1.09004 * 109.46936 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 2.0607 1.8927 -1.4370 5 6 2.6095 3.3209 -1.4371 6 6 4.0130 3.3279 -0.8277 7 7 4.5397 4.6993 -0.8272 8 6 4.5290 5.2677 -2.1818 9 6 4.9836 6.7035 -2.1275 10 1 5.1745 7.1739 -1.1744 11 6 5.1561 7.4165 -3.2950 12 7 4.9243 6.8436 -4.4558 13 14 5.7204 9.1960 -3.2279 14 1 5.9125 9.6013 -1.8122 15 1 7.0043 9.3362 -3.9609 16 1 4.6937 10.0649 -3.8571 17 6 5.8886 4.7449 -0.2473 18 6 6.7888 3.7413 -0.9705 19 8 6.9901 4.1677 -2.3195 20 6 7.8222 3.2954 -3.0868 21 6 3.9476 2.8067 0.6093 22 6 3.3987 1.3786 0.6094 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8306 -0.5261 0.7814 27 1 1.3397 2.0124 0.5894 28 1 1.0610 1.8872 -1.8713 29 1 2.7165 1.2518 -2.0265 30 1 1.9541 3.9620 -0.8475 31 1 2.6565 3.6920 -2.4609 32 1 4.6683 2.6869 -1.4173 33 1 5.2029 4.6971 -2.8207 34 1 3.5181 5.2219 -2.5871 35 1 5.0453 7.3453 -5.2771 36 1 6.2989 5.7484 -0.3605 37 1 5.8377 4.4904 0.8113 38 1 7.7504 3.6825 -0.4607 39 1 6.3151 2.7596 -0.9668 40 1 7.9254 3.6884 -4.0983 41 1 8.8052 3.2279 -2.6208 42 1 7.3702 2.3043 -3.1269 43 1 4.9473 2.8122 1.0436 44 1 3.2922 3.4479 1.1989 45 1 4.0542 0.7375 0.0198 46 1 3.3526 1.0071 1.6331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097913326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:47 Heat of formation + Delta-G solvation = -41.159660 kcal Electronic energy + Delta-G solvation = -22657.570934 eV Core-core repulsion = 19582.178142 eV Total energy + Delta-G solvation = -3075.392791 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.33217 -37.57361 -35.88938 -33.63742 -32.23364 -30.77030 -29.00339 -28.28957 -26.15393 -25.45046 -24.27174 -22.98322 -21.90704 -21.31684 -19.93701 -18.74864 -16.50009 -15.94008 -15.78473 -15.67545 -14.96997 -14.69024 -14.54301 -14.30025 -13.93305 -13.75397 -13.34016 -13.02839 -12.99441 -12.21298 -12.13129 -11.90994 -11.73705 -11.66942 -11.33443 -11.13041 -11.01652 -10.93915 -10.76668 -10.68373 -10.63190 -10.37536 -10.17561 -9.93234 -9.80512 -9.32705 -8.92109 -8.87381 -8.48915 -8.20166 -6.93389 -5.82134 -3.78938 3.40919 3.47991 3.52226 4.13413 4.47060 4.58587 4.85745 4.94620 5.02207 5.29508 5.34789 5.44811 5.53967 5.55006 5.59230 5.63181 5.70193 5.75881 5.78243 5.81282 5.83981 5.86962 5.90353 5.97602 6.08134 6.14585 6.18187 6.20401 6.32320 6.43030 6.52103 6.57245 6.75921 6.83386 6.93152 7.04220 7.31937 7.52337 7.85518 7.95324 7.99068 8.28647 8.43688 8.79847 9.27413 9.81677 11.29372 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.005240 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.568624 B = 5342.458525 C = 5899.515450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.694 5.694 3 C 0.087 3.913 4 C -0.102 4.102 5 C -0.113 4.113 6 C 0.084 3.916 7 N -0.530 5.530 8 C 0.179 3.821 9 C -0.491 4.491 10 H 0.056 0.944 11 C 0.058 3.942 12 N -0.897 5.897 13 Si 0.888 3.112 14 H -0.275 1.275 15 H -0.288 1.288 16 H -0.287 1.287 17 C 0.062 3.938 18 C 0.023 3.977 19 O -0.343 6.343 20 C 0.028 3.972 21 C -0.110 4.110 22 C -0.116 4.116 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.019 0.981 26 H 0.337 0.663 27 H 0.044 0.956 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.035 0.965 34 H 0.023 0.977 35 H 0.255 0.745 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.033 0.967 39 H 0.041 0.959 40 H 0.081 0.919 41 H 0.027 0.973 42 H 0.028 0.972 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.217 -13.054 9.098 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.324 5.324 3 C -0.022 4.022 4 C -0.140 4.140 5 C -0.151 4.151 6 C -0.025 4.025 7 N -0.253 5.253 8 C 0.055 3.945 9 C -0.530 4.530 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.538 5.538 13 Si 0.717 3.283 14 H -0.200 1.200 15 H -0.214 1.214 16 H -0.214 1.214 17 C -0.067 4.067 18 C -0.056 4.056 19 O -0.261 6.261 20 C -0.069 4.069 21 C -0.148 4.148 22 C -0.155 4.155 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.038 0.962 26 H 0.154 0.846 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.100 0.900 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.581 -12.611 8.441 15.393 hybrid contribution 0.850 0.445 0.374 1.030 sum -1.731 -12.166 8.815 15.123 Atomic orbital electron populations 1.22216 0.88145 1.01360 1.00459 1.60456 1.07527 1.14792 1.49632 1.21625 0.95194 0.88130 0.97274 1.21505 1.00814 0.96464 0.95257 1.21631 0.96003 0.95179 1.02270 1.21547 0.95454 0.91228 0.94278 1.62350 1.19970 1.15984 1.26997 1.20066 0.96841 0.94793 0.82807 1.21122 1.43474 0.96257 0.92135 0.92547 1.24861 0.96079 0.97754 0.95523 1.69969 1.50504 1.36226 0.97105 0.86607 0.78109 0.85772 0.77826 1.19950 1.21405 1.21393 1.22213 0.88453 1.00247 0.95813 1.23364 0.98419 0.99064 0.84704 1.88477 1.68076 1.47748 1.21752 1.22670 0.93145 0.94030 0.97051 1.21587 1.00777 0.94587 0.97867 1.21683 0.96026 0.98106 0.99669 0.91590 0.91831 0.96233 0.84551 0.93847 0.92536 0.91764 0.91754 0.90661 0.94832 0.94714 0.95922 0.93496 0.88810 0.91566 0.94904 0.94105 0.90022 0.95403 0.95327 0.92151 0.91447 0.91511 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.50 60.06 0.63 0.90 16 2 N -0.69 -7.68 6.66 -114.02 -0.76 -8.44 16 3 C 0.09 1.09 2.49 -67.71 -0.17 0.92 16 4 C -0.10 -1.47 5.42 -26.73 -0.15 -1.62 16 5 C -0.11 -1.95 4.85 -26.73 -0.13 -2.08 16 6 C 0.08 1.48 1.40 -67.71 -0.10 1.38 16 7 N -0.53 -11.21 4.62 -228.08 -1.05 -12.26 16 8 C 0.18 4.64 3.93 -4.98 -0.02 4.62 16 9 C -0.49 -13.90 8.21 -34.44 -0.28 -14.18 16 10 H 0.06 1.60 6.96 -52.49 -0.37 1.23 16 11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 13 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 14 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 17 C 0.06 1.19 5.20 -3.82 -0.02 1.17 16 18 C 0.02 0.42 5.66 37.16 0.21 0.63 16 19 O -0.34 -7.38 7.60 -35.23 -0.27 -7.65 16 20 C 0.03 0.48 11.01 101.05 1.11 1.59 16 21 C -0.11 -1.57 4.94 -26.73 -0.13 -1.70 16 22 C -0.12 -1.40 5.19 -26.73 -0.14 -1.54 16 23 H 0.07 0.68 7.44 -51.93 -0.39 0.29 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.18 8.06 -51.93 -0.42 -0.24 16 26 H 0.34 3.18 8.43 -39.29 -0.33 2.85 16 27 H 0.04 0.56 7.80 -51.93 -0.41 0.16 16 28 H 0.06 0.79 7.45 -51.93 -0.39 0.40 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.50 6.26 -51.93 -0.33 1.18 16 32 H 0.03 0.64 6.06 -51.93 -0.31 0.32 16 33 H 0.04 0.98 5.32 -51.93 -0.28 0.71 16 34 H 0.02 0.64 6.01 -51.93 -0.31 0.32 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.09 2.06 6.30 -51.93 -0.33 1.73 16 37 H 0.07 1.08 6.66 -51.93 -0.35 0.74 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.04 0.70 5.89 -51.93 -0.31 0.39 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.83 6.53 -51.93 -0.34 0.49 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 LS Contribution 342.18 15.07 5.16 5.16 Total: -1.00 -30.70 342.18 -8.68 -39.38 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -8.20 Total: 1.30 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 0.72 Total: -8.33 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -1.08 Total: -47.06 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.27 Total: -7.65 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.70 -8.68 -39.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097913326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.778 kcal (2) G-P(sol) polarization free energy of solvation -30.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds