Wall clock time and date at job start Mon Mar 30 2020 05:00:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46895 * 1
3 3 C 1.46904 * 110.99734 * 2 1
4 4 C 1.52999 * 109.47092 * 275.00033 * 3 2 1
5 5 C 1.53002 * 109.47295 * 180.02562 * 4 3 2
6 6 C 1.53005 * 109.46945 * 59.99914 * 5 4 3
7 7 N 1.46904 * 109.46835 * 180.02562 * 6 5 4
8 8 C 1.46901 * 110.99816 * 303.95211 * 7 6 5
9 9 C 1.50697 * 109.46818 * 176.06164 * 8 7 6
10 10 H 1.07997 * 120.00762 * 354.90087 * 9 8 7
11 11 C 1.37881 * 119.99903 * 174.89673 * 9 8 7
12 12 N 1.31511 * 119.99976 * 359.97438 * 11 9 8
13 13 Si 1.86797 * 120.00159 * 180.02562 * 11 9 8
14 14 H 1.48505 * 109.47178 * 0.02562 * 13 11 9
15 15 H 1.48503 * 109.47386 * 119.99805 * 13 11 9
16 16 H 1.48499 * 109.47169 * 240.00134 * 13 11 9
17 17 C 1.46899 * 110.99875 * 179.97438 * 7 6 5
18 18 C 1.53000 * 109.46882 * 53.70822 * 17 7 6
19 19 O 1.42899 * 109.47368 * 67.15057 * 18 17 7
20 20 C 1.42905 * 114.00198 * 179.97438 * 19 18 17
21 21 C 1.52999 * 109.47194 * 300.00148 * 6 5 4
22 22 C 1.52998 * 109.46972 * 59.99921 * 21 6 5
23 23 H 1.08996 * 109.47183 * 59.99935 * 1 2 3
24 24 H 1.08993 * 109.47250 * 180.02562 * 1 2 3
25 25 H 1.09000 * 109.46846 * 299.99953 * 1 2 3
26 26 H 1.00901 * 111.00281 * 123.95258 * 2 1 3
27 27 H 1.08995 * 109.47577 * 35.00233 * 3 2 1
28 28 H 1.09001 * 109.47384 * 60.00090 * 4 3 2
29 29 H 1.09005 * 109.47148 * 299.99995 * 4 3 2
30 30 H 1.09005 * 109.46807 * 299.99945 * 5 4 3
31 31 H 1.08995 * 109.47235 * 179.97438 * 5 4 3
32 32 H 1.08996 * 109.47047 * 60.00815 * 6 5 4
33 33 H 1.08993 * 109.47529 * 296.06260 * 8 7 6
34 34 H 1.09002 * 109.47235 * 56.06896 * 8 7 6
35 35 H 0.97000 * 119.99910 * 179.97438 * 12 11 9
36 36 H 1.09004 * 109.47071 * 173.70217 * 17 7 6
37 37 H 1.08996 * 109.47272 * 293.71023 * 17 7 6
38 38 H 1.08999 * 109.47292 * 187.15249 * 18 17 7
39 39 H 1.09001 * 109.47554 * 307.15441 * 18 17 7
40 40 H 1.09003 * 109.47008 * 179.97438 * 20 19 18
41 41 H 1.08997 * 109.46817 * 299.99852 * 20 19 18
42 42 H 1.09002 * 109.46786 * 60.00205 * 20 19 18
43 43 H 1.08996 * 109.46974 * 180.02562 * 21 6 5
44 44 H 1.09005 * 109.47148 * 300.00331 * 21 6 5
45 45 H 1.09005 * 109.46850 * 60.00227 * 22 21 6
46 46 H 1.09004 * 109.46936 * 179.97438 * 22 21 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9953 1.3715 0.0000
4 6 2.0607 1.8927 -1.4370
5 6 2.6095 3.3209 -1.4371
6 6 4.0130 3.3279 -0.8277
7 7 4.5397 4.6993 -0.8272
8 6 4.5290 5.2677 -2.1818
9 6 4.9836 6.7035 -2.1275
10 1 5.1745 7.1739 -1.1744
11 6 5.1561 7.4165 -3.2950
12 7 4.9243 6.8436 -4.4558
13 14 5.7204 9.1960 -3.2279
14 1 5.9125 9.6013 -1.8122
15 1 7.0043 9.3362 -3.9609
16 1 4.6937 10.0649 -3.8571
17 6 5.8886 4.7449 -0.2473
18 6 6.7888 3.7413 -0.9705
19 8 6.9901 4.1677 -2.3195
20 6 7.8222 3.2954 -3.0868
21 6 3.9476 2.8067 0.6093
22 6 3.3987 1.3786 0.6094
23 1 -0.3633 0.5138 -0.8899
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5138 0.8900
26 1 1.8306 -0.5261 0.7814
27 1 1.3397 2.0124 0.5894
28 1 1.0610 1.8872 -1.8713
29 1 2.7165 1.2518 -2.0265
30 1 1.9541 3.9620 -0.8475
31 1 2.6565 3.6920 -2.4609
32 1 4.6683 2.6869 -1.4173
33 1 5.2029 4.6971 -2.8207
34 1 3.5181 5.2219 -2.5871
35 1 5.0453 7.3453 -5.2771
36 1 6.2989 5.7484 -0.3605
37 1 5.8377 4.4904 0.8113
38 1 7.7504 3.6825 -0.4607
39 1 6.3151 2.7596 -0.9668
40 1 7.9254 3.6884 -4.0983
41 1 8.8052 3.2279 -2.6208
42 1 7.3702 2.3043 -3.1269
43 1 4.9473 2.8122 1.0436
44 1 3.2922 3.4479 1.1989
45 1 4.0542 0.7375 0.0198
46 1 3.3526 1.0071 1.6331
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000097913326.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:00:47
Heat of formation + Delta-G solvation = -41.159660 kcal
Electronic energy + Delta-G solvation = -22657.570934 eV
Core-core repulsion = 19582.178142 eV
Total energy + Delta-G solvation = -3075.392791 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.43 seconds
Orbital eigenvalues (eV)
-39.33217 -37.57361 -35.88938 -33.63742 -32.23364 -30.77030 -29.00339 -28.28957
-26.15393 -25.45046 -24.27174 -22.98322 -21.90704 -21.31684 -19.93701 -18.74864
-16.50009 -15.94008 -15.78473 -15.67545 -14.96997 -14.69024 -14.54301 -14.30025
-13.93305 -13.75397 -13.34016 -13.02839 -12.99441 -12.21298 -12.13129 -11.90994
-11.73705 -11.66942 -11.33443 -11.13041 -11.01652 -10.93915 -10.76668 -10.68373
-10.63190 -10.37536 -10.17561 -9.93234 -9.80512 -9.32705 -8.92109 -8.87381
-8.48915 -8.20166 -6.93389 -5.82134 -3.78938 3.40919 3.47991 3.52226
4.13413 4.47060 4.58587 4.85745 4.94620 5.02207 5.29508 5.34789
5.44811 5.53967 5.55006 5.59230 5.63181 5.70193 5.75881 5.78243
5.81282 5.83981 5.86962 5.90353 5.97602 6.08134 6.14585 6.18187
6.20401 6.32320 6.43030 6.52103 6.57245 6.75921 6.83386 6.93152
7.04220 7.31937 7.52337 7.85518 7.95324 7.99068 8.28647 8.43688
8.79847 9.27413 9.81677 11.29372
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.021441 B = 0.005240 C = 0.004745
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1305.568624 B = 5342.458525 C = 5899.515450
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 N -0.694 5.694
3 C 0.087 3.913
4 C -0.102 4.102
5 C -0.113 4.113
6 C 0.084 3.916
7 N -0.530 5.530
8 C 0.179 3.821
9 C -0.491 4.491
10 H 0.056 0.944
11 C 0.058 3.942
12 N -0.897 5.897
13 Si 0.888 3.112
14 H -0.275 1.275
15 H -0.288 1.288
16 H -0.287 1.287
17 C 0.062 3.938
18 C 0.023 3.977
19 O -0.343 6.343
20 C 0.028 3.972
21 C -0.110 4.110
22 C -0.116 4.116
23 H 0.065 0.935
24 H 0.063 0.937
25 H 0.019 0.981
26 H 0.337 0.663
27 H 0.044 0.956
28 H 0.056 0.944
29 H 0.064 0.936
30 H 0.064 0.936
31 H 0.075 0.925
32 H 0.034 0.966
33 H 0.035 0.965
34 H 0.023 0.977
35 H 0.255 0.745
36 H 0.094 0.906
37 H 0.066 0.934
38 H 0.033 0.967
39 H 0.041 0.959
40 H 0.081 0.919
41 H 0.027 0.973
42 H 0.028 0.972
43 H 0.060 0.940
44 H 0.067 0.933
45 H 0.066 0.934
46 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.217 -13.054 9.098 16.066
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 N -0.324 5.324
3 C -0.022 4.022
4 C -0.140 4.140
5 C -0.151 4.151
6 C -0.025 4.025
7 N -0.253 5.253
8 C 0.055 3.945
9 C -0.530 4.530
10 H 0.075 0.925
11 C -0.142 4.142
12 N -0.538 5.538
13 Si 0.717 3.283
14 H -0.200 1.200
15 H -0.214 1.214
16 H -0.214 1.214
17 C -0.067 4.067
18 C -0.056 4.056
19 O -0.261 6.261
20 C -0.069 4.069
21 C -0.148 4.148
22 C -0.155 4.155
23 H 0.084 0.916
24 H 0.082 0.918
25 H 0.038 0.962
26 H 0.154 0.846
27 H 0.062 0.938
28 H 0.075 0.925
29 H 0.082 0.918
30 H 0.082 0.918
31 H 0.093 0.907
32 H 0.052 0.948
33 H 0.053 0.947
34 H 0.041 0.959
35 H 0.065 0.935
36 H 0.112 0.888
37 H 0.084 0.916
38 H 0.051 0.949
39 H 0.059 0.941
40 H 0.100 0.900
41 H 0.046 0.954
42 H 0.047 0.953
43 H 0.078 0.922
44 H 0.086 0.914
45 H 0.085 0.915
46 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -2.581 -12.611 8.441 15.393
hybrid contribution 0.850 0.445 0.374 1.030
sum -1.731 -12.166 8.815 15.123
Atomic orbital electron populations
1.22216 0.88145 1.01360 1.00459 1.60456 1.07527 1.14792 1.49632
1.21625 0.95194 0.88130 0.97274 1.21505 1.00814 0.96464 0.95257
1.21631 0.96003 0.95179 1.02270 1.21547 0.95454 0.91228 0.94278
1.62350 1.19970 1.15984 1.26997 1.20066 0.96841 0.94793 0.82807
1.21122 1.43474 0.96257 0.92135 0.92547 1.24861 0.96079 0.97754
0.95523 1.69969 1.50504 1.36226 0.97105 0.86607 0.78109 0.85772
0.77826 1.19950 1.21405 1.21393 1.22213 0.88453 1.00247 0.95813
1.23364 0.98419 0.99064 0.84704 1.88477 1.68076 1.47748 1.21752
1.22670 0.93145 0.94030 0.97051 1.21587 1.00777 0.94587 0.97867
1.21683 0.96026 0.98106 0.99669 0.91590 0.91831 0.96233 0.84551
0.93847 0.92536 0.91764 0.91754 0.90661 0.94832 0.94714 0.95922
0.93496 0.88810 0.91566 0.94904 0.94105 0.90022 0.95403 0.95327
0.92151 0.91447 0.91511 0.92628
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.27 10.50 60.06 0.63 0.90 16
2 N -0.69 -7.68 6.66 -114.02 -0.76 -8.44 16
3 C 0.09 1.09 2.49 -67.71 -0.17 0.92 16
4 C -0.10 -1.47 5.42 -26.73 -0.15 -1.62 16
5 C -0.11 -1.95 4.85 -26.73 -0.13 -2.08 16
6 C 0.08 1.48 1.40 -67.71 -0.10 1.38 16
7 N -0.53 -11.21 4.62 -228.08 -1.05 -12.26 16
8 C 0.18 4.64 3.93 -4.98 -0.02 4.62 16
9 C -0.49 -13.90 8.21 -34.44 -0.28 -14.18 16
10 H 0.06 1.60 6.96 -52.49 -0.37 1.23 16
11 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16
12 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16
13 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16
14 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16
15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
16 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
17 C 0.06 1.19 5.20 -3.82 -0.02 1.17 16
18 C 0.02 0.42 5.66 37.16 0.21 0.63 16
19 O -0.34 -7.38 7.60 -35.23 -0.27 -7.65 16
20 C 0.03 0.48 11.01 101.05 1.11 1.59 16
21 C -0.11 -1.57 4.94 -26.73 -0.13 -1.70 16
22 C -0.12 -1.40 5.19 -26.73 -0.14 -1.54 16
23 H 0.07 0.68 7.44 -51.93 -0.39 0.29 16
24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
25 H 0.02 0.18 8.06 -51.93 -0.42 -0.24 16
26 H 0.34 3.18 8.43 -39.29 -0.33 2.85 16
27 H 0.04 0.56 7.80 -51.93 -0.41 0.16 16
28 H 0.06 0.79 7.45 -51.93 -0.39 0.40 16
29 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16
30 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16
31 H 0.07 1.50 6.26 -51.93 -0.33 1.18 16
32 H 0.03 0.64 6.06 -51.93 -0.31 0.32 16
33 H 0.04 0.98 5.32 -51.93 -0.28 0.71 16
34 H 0.02 0.64 6.01 -51.93 -0.31 0.32 16
35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
36 H 0.09 2.06 6.30 -51.93 -0.33 1.73 16
37 H 0.07 1.08 6.66 -51.93 -0.35 0.74 16
38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16
39 H 0.04 0.70 5.89 -51.93 -0.31 0.39 16
40 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16
41 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16
42 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16
43 H 0.06 0.83 6.53 -51.93 -0.34 0.49 16
44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
46 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16
LS Contribution 342.18 15.07 5.16 5.16
Total: -1.00 -30.70 342.18 -8.68 -39.38
By element:
Atomic # 1 Polarization: 9.50 SS G_CDS: -8.20 Total: 1.30 kcal
Atomic # 6 Polarization: -9.05 SS G_CDS: 0.72 Total: -8.33 kcal
Atomic # 7 Polarization: -45.99 SS G_CDS: -1.08 Total: -47.06 kcal
Atomic # 8 Polarization: -7.38 SS G_CDS: -0.27 Total: -7.65 kcal
Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal
Total LS contribution 5.16 Total: 5.16 kcal
Total: -30.70 -8.68 -39.38 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000097913326.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.778 kcal
(2) G-P(sol) polarization free energy of solvation -30.697 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.475 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.160 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.43 seconds