Wall clock time and date at job start Mon Mar 30 2020 05:00:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46895 * 1
3 3 C 1.46904 * 110.99734 * 2 1
4 4 C 1.52999 * 109.47092 * 275.00033 * 3 2 1
5 5 C 1.53002 * 109.47295 * 180.02562 * 4 3 2
6 6 C 1.53005 * 109.46945 * 59.99914 * 5 4 3
7 7 N 1.46904 * 109.46835 * 180.02562 * 6 5 4
8 8 C 1.46901 * 110.99816 * 303.95211 * 7 6 5
9 9 C 1.50697 * 109.46818 * 176.06164 * 8 7 6
10 10 H 1.07997 * 120.00762 * 354.90087 * 9 8 7
11 11 C 1.37881 * 119.99903 * 174.89673 * 9 8 7
12 12 N 1.31511 * 119.99976 * 359.97438 * 11 9 8
13 13 Si 1.86797 * 120.00159 * 180.02562 * 11 9 8
14 14 H 1.48505 * 109.47178 * 0.02562 * 13 11 9
15 15 H 1.48503 * 109.47386 * 119.99805 * 13 11 9
16 16 H 1.48499 * 109.47169 * 240.00134 * 13 11 9
17 17 C 1.46899 * 110.99875 * 179.97438 * 7 6 5
18 18 C 1.53000 * 109.46882 * 53.70822 * 17 7 6
19 19 O 1.42899 * 109.47368 * 67.15057 * 18 17 7
20 20 C 1.42905 * 114.00198 * 179.97438 * 19 18 17
21 21 C 1.52999 * 109.47194 * 300.00148 * 6 5 4
22 22 C 1.52998 * 109.46972 * 59.99921 * 21 6 5
23 23 H 1.08996 * 109.47183 * 59.99935 * 1 2 3
24 24 H 1.08993 * 109.47250 * 180.02562 * 1 2 3
25 25 H 1.09000 * 109.46846 * 299.99953 * 1 2 3
26 26 H 1.00901 * 111.00281 * 123.95258 * 2 1 3
27 27 H 1.08995 * 109.47577 * 35.00233 * 3 2 1
28 28 H 1.09001 * 109.47384 * 60.00090 * 4 3 2
29 29 H 1.09005 * 109.47148 * 299.99995 * 4 3 2
30 30 H 1.09005 * 109.46807 * 299.99945 * 5 4 3
31 31 H 1.08995 * 109.47235 * 179.97438 * 5 4 3
32 32 H 1.08996 * 109.47047 * 60.00815 * 6 5 4
33 33 H 1.08993 * 109.47529 * 296.06260 * 8 7 6
34 34 H 1.09002 * 109.47235 * 56.06896 * 8 7 6
35 35 H 0.97000 * 119.99910 * 179.97438 * 12 11 9
36 36 H 1.09004 * 109.47071 * 173.70217 * 17 7 6
37 37 H 1.08996 * 109.47272 * 293.71023 * 17 7 6
38 38 H 1.08999 * 109.47292 * 187.15249 * 18 17 7
39 39 H 1.09001 * 109.47554 * 307.15441 * 18 17 7
40 40 H 1.09003 * 109.47008 * 179.97438 * 20 19 18
41 41 H 1.08997 * 109.46817 * 299.99852 * 20 19 18
42 42 H 1.09002 * 109.46786 * 60.00205 * 20 19 18
43 43 H 1.08996 * 109.46974 * 180.02562 * 21 6 5
44 44 H 1.09005 * 109.47148 * 300.00331 * 21 6 5
45 45 H 1.09005 * 109.46850 * 60.00227 * 22 21 6
46 46 H 1.09004 * 109.46936 * 179.97438 * 22 21 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9953 1.3715 0.0000
4 6 2.0607 1.8927 -1.4370
5 6 2.6095 3.3209 -1.4371
6 6 4.0130 3.3279 -0.8277
7 7 4.5397 4.6993 -0.8272
8 6 4.5290 5.2677 -2.1818
9 6 4.9836 6.7035 -2.1275
10 1 5.1745 7.1739 -1.1744
11 6 5.1561 7.4165 -3.2950
12 7 4.9243 6.8436 -4.4558
13 14 5.7204 9.1960 -3.2279
14 1 5.9125 9.6013 -1.8122
15 1 7.0043 9.3362 -3.9609
16 1 4.6937 10.0649 -3.8571
17 6 5.8886 4.7449 -0.2473
18 6 6.7888 3.7413 -0.9705
19 8 6.9901 4.1677 -2.3195
20 6 7.8222 3.2954 -3.0868
21 6 3.9476 2.8067 0.6093
22 6 3.3987 1.3786 0.6094
23 1 -0.3633 0.5138 -0.8899
24 1 -0.3633 -1.0276 0.0005
25 1 -0.3633 0.5138 0.8900
26 1 1.8306 -0.5261 0.7814
27 1 1.3397 2.0124 0.5894
28 1 1.0610 1.8872 -1.8713
29 1 2.7165 1.2518 -2.0265
30 1 1.9541 3.9620 -0.8475
31 1 2.6565 3.6920 -2.4609
32 1 4.6683 2.6869 -1.4173
33 1 5.2029 4.6971 -2.8207
34 1 3.5181 5.2219 -2.5871
35 1 5.0453 7.3453 -5.2771
36 1 6.2989 5.7484 -0.3605
37 1 5.8377 4.4904 0.8113
38 1 7.7504 3.6825 -0.4607
39 1 6.3151 2.7596 -0.9668
40 1 7.9254 3.6884 -4.0983
41 1 8.8052 3.2279 -2.6208
42 1 7.3702 2.3043 -3.1269
43 1 4.9473 2.8122 1.0436
44 1 3.2922 3.4479 1.1989
45 1 4.0542 0.7375 0.0198
46 1 3.3526 1.0071 1.6331
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000097913326.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:00:46
Heat of formation + Delta-G solvation = -63.553406 kcal
Electronic energy + Delta-G solvation = -22658.541999 eV
Core-core repulsion = 19582.178142 eV
Total energy + Delta-G solvation = -3076.363857 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-40.69781 -38.90819 -37.29149 -35.10145 -34.13437 -32.05250 -30.38362 -29.87807
-27.71521 -26.95118 -25.42613 -24.58910 -23.26272 -22.78544 -21.15393 -20.23364
-18.44033 -17.50679 -17.19324 -16.85214 -16.59291 -16.18623 -15.83517 -15.67631
-15.30556 -15.19071 -14.52547 -14.46960 -14.13591 -13.88044 -13.50644 -13.28242
-13.23519 -12.96498 -12.83163 -12.74513 -12.47290 -12.41439 -12.33066 -12.12163
-11.96071 -11.93076 -11.72618 -11.65899 -11.22843 -10.95679 -10.74967 -10.53763
-10.24025 -9.36057 -8.67394 -8.04048 -6.08054 1.41591 1.41876 1.54212
2.48239 3.03663 3.22148 3.30484 3.52303 3.76988 3.85847 4.20088
4.24904 4.30245 4.35273 4.42741 4.46142 4.51779 4.53874 4.57815
4.61015 4.61438 4.64591 4.69121 4.74416 4.83500 4.90469 4.98516
5.05873 5.08577 5.18430 5.22625 5.29978 5.33283 5.42006 5.53442
5.57424 5.75903 5.87547 6.10808 6.27533 6.48805 6.52600 6.56473
6.89381 7.09831 7.57318 9.07429
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.021441 B = 0.005240 C = 0.004745
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1305.568624 B = 5342.458525 C = 5899.515450
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 N -0.699 5.699
3 C 0.094 3.906
4 C -0.093 4.093
5 C -0.107 4.107
6 C 0.086 3.914
7 N -0.538 5.538
8 C 0.198 3.802
9 C -0.500 4.500
10 H 0.052 0.948
11 C 0.005 3.995
12 N -0.933 5.933
13 Si 0.954 3.046
14 H -0.266 1.266
15 H -0.284 1.284
16 H -0.283 1.283
17 C 0.060 3.940
18 C 0.025 3.975
19 O -0.390 6.390
20 C 0.027 3.973
21 C -0.101 4.101
22 C -0.108 4.108
23 H 0.054 0.946
24 H 0.080 0.920
25 H 0.026 0.974
26 H 0.351 0.649
27 H 0.042 0.958
28 H 0.057 0.943
29 H 0.056 0.944
30 H 0.057 0.943
31 H 0.035 0.965
32 H 0.022 0.978
33 H 0.013 0.987
34 H -0.009 1.009
35 H 0.256 0.744
36 H 0.063 0.937
37 H 0.103 0.897
38 H 0.061 0.939
39 H 0.053 0.947
40 H 0.069 0.931
41 H 0.054 0.946
42 H 0.042 0.958
43 H 0.074 0.926
44 H 0.065 0.935
45 H 0.066 0.934
46 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.746 -14.285 11.389 18.353
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 N -0.331 5.331
3 C -0.016 4.016
4 C -0.132 4.132
5 C -0.146 4.146
6 C -0.022 4.022
7 N -0.261 5.261
8 C 0.073 3.927
9 C -0.539 4.539
10 H 0.070 0.930
11 C -0.192 4.192
12 N -0.575 5.575
13 Si 0.781 3.219
14 H -0.190 1.190
15 H -0.210 1.210
16 H -0.209 1.209
17 C -0.068 4.068
18 C -0.052 4.052
19 O -0.309 6.309
20 C -0.070 4.070
21 C -0.139 4.139
22 C -0.146 4.146
23 H 0.073 0.927
24 H 0.099 0.901
25 H 0.045 0.955
26 H 0.170 0.830
27 H 0.060 0.940
28 H 0.076 0.924
29 H 0.074 0.926
30 H 0.075 0.925
31 H 0.054 0.946
32 H 0.040 0.960
33 H 0.030 0.970
34 H 0.008 0.992
35 H 0.065 0.935
36 H 0.081 0.919
37 H 0.121 0.879
38 H 0.079 0.921
39 H 0.071 0.929
40 H 0.088 0.912
41 H 0.073 0.927
42 H 0.060 0.940
43 H 0.092 0.908
44 H 0.084 0.916
45 H 0.085 0.915
46 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -2.106 -13.863 10.762 17.676
hybrid contribution 0.683 0.778 -0.342 1.090
sum -1.424 -13.085 10.420 16.788
Atomic orbital electron populations
1.22252 0.87291 1.02449 1.00247 1.60355 1.08416 1.13749 1.50549
1.21461 0.95859 0.89047 0.95237 1.21394 1.00342 0.94206 0.97244
1.21528 0.96369 0.97005 0.99688 1.21623 0.94634 0.89129 0.96857
1.62243 1.21653 1.18284 1.23961 1.19617 0.94069 0.93958 0.85080
1.21421 1.42989 0.97521 0.91953 0.92967 1.25681 0.96284 1.02071
0.95176 1.70105 1.51682 1.37947 0.97733 0.85565 0.77628 0.80584
0.78161 1.19015 1.20999 1.20881 1.22252 0.87523 0.99198 0.97817
1.23390 0.99581 0.98766 0.83501 1.88391 1.69311 1.49635 1.23592
1.22762 0.94047 0.93848 0.96318 1.21515 1.01796 0.95883 0.94718
1.21626 0.95232 0.96381 1.01407 0.92698 0.90123 0.95543 0.83037
0.93968 0.92430 0.92559 0.92467 0.94606 0.95974 0.96967 0.99158
0.93477 0.91898 0.87939 0.92135 0.92948 0.91203 0.92707 0.93972
0.90792 0.91595 0.91529 0.89626
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.46 10.50 127.69 1.34 1.80 16
2 N -0.70 -13.63 6.66 -514.64 -3.43 -17.06 16
3 C 0.09 2.14 2.49 44.91 0.11 2.26 16
4 C -0.09 -2.69 5.42 30.59 0.17 -2.52 16
5 C -0.11 -3.87 4.85 30.60 0.15 -3.73 16
6 C 0.09 3.03 1.40 44.92 0.06 3.10 16
7 N -0.54 -23.13 4.62 -875.52 -4.04 -27.17 16
8 C 0.20 10.76 3.93 85.56 0.34 11.10 16
9 C -0.50 -29.18 8.21 25.60 0.21 -28.97 16
10 H 0.05 3.02 6.96 -2.91 -0.02 3.00 16
11 C 0.00 0.28 5.46 84.66 0.46 0.74 16
12 N -0.93 -58.22 13.29 21.45 0.28 -57.93 16
13 Si 0.95 46.39 29.54 68.60 2.03 48.42 16
14 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16
15 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16
16 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16
17 C 0.06 2.29 5.20 86.30 0.45 2.74 16
18 C 0.03 0.89 5.66 71.98 0.41 1.30 16
19 O -0.39 -16.97 7.60 -148.98 -1.13 -18.10 16
20 C 0.03 0.90 11.01 113.37 1.25 2.15 16
21 C -0.10 -2.63 4.94 30.59 0.15 -2.48 16
22 C -0.11 -2.26 5.19 30.59 0.16 -2.10 16
23 H 0.05 1.05 7.44 -2.39 -0.02 1.04 16
24 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16
25 H 0.03 0.42 8.06 -2.39 -0.02 0.40 16
26 H 0.35 5.38 8.43 -89.69 -0.76 4.62 16
27 H 0.04 1.00 7.80 -2.39 -0.02 0.98 16
28 H 0.06 1.62 7.45 -2.39 -0.02 1.61 16
29 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16
30 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16
31 H 0.04 1.54 6.26 -2.39 -0.01 1.53 16
32 H 0.02 0.85 6.06 -2.39 -0.01 0.83 16
33 H 0.01 0.75 5.32 -2.39 -0.01 0.74 16
34 H -0.01 -0.57 6.01 -2.39 -0.01 -0.58 16
35 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16
36 H 0.06 2.77 6.30 -2.38 -0.02 2.76 16
37 H 0.10 3.09 6.66 -2.39 -0.02 3.08 16
38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16
39 H 0.05 1.70 5.89 -2.39 -0.01 1.68 16
40 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16
41 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16
42 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16
43 H 0.07 1.75 6.53 -2.39 -0.02 1.73 16
44 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16
45 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16
46 H 0.09 1.36 8.12 -2.38 -0.02 1.34 16
Total: -1.00 -68.79 342.18 -0.85 -69.64
By element:
Atomic # 1 Polarization: 16.63 SS G_CDS: 0.19 Total: 16.82 kcal
Atomic # 6 Polarization: -19.87 SS G_CDS: 5.25 Total: -14.62 kcal
Atomic # 7 Polarization: -94.98 SS G_CDS: -7.19 Total: -102.16 kcal
Atomic # 8 Polarization: -16.97 SS G_CDS: -1.13 Total: -18.10 kcal
Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal
Total: -68.79 -0.85 -69.64 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000097913326.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.088 kcal
(2) G-P(sol) polarization free energy of solvation -68.791 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.702 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.642 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.553 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds