Wall clock time and date at job start Mon Mar 30 2020 05:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46904 * 110.99734 * 2 1 4 4 C 1.52999 * 109.47092 * 275.00033 * 3 2 1 5 5 C 1.53002 * 109.47295 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46945 * 59.99914 * 5 4 3 7 7 N 1.46904 * 109.46835 * 180.02562 * 6 5 4 8 8 C 1.46901 * 110.99816 * 303.95211 * 7 6 5 9 9 C 1.50697 * 109.46818 * 176.06164 * 8 7 6 10 10 H 1.07997 * 120.00762 * 354.90087 * 9 8 7 11 11 C 1.37881 * 119.99903 * 174.89673 * 9 8 7 12 12 N 1.31511 * 119.99976 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00159 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47178 * 0.02562 * 13 11 9 15 15 H 1.48503 * 109.47386 * 119.99805 * 13 11 9 16 16 H 1.48499 * 109.47169 * 240.00134 * 13 11 9 17 17 C 1.46899 * 110.99875 * 179.97438 * 7 6 5 18 18 C 1.53000 * 109.46882 * 53.70822 * 17 7 6 19 19 O 1.42899 * 109.47368 * 67.15057 * 18 17 7 20 20 C 1.42905 * 114.00198 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.47194 * 300.00148 * 6 5 4 22 22 C 1.52998 * 109.46972 * 59.99921 * 21 6 5 23 23 H 1.08996 * 109.47183 * 59.99935 * 1 2 3 24 24 H 1.08993 * 109.47250 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46846 * 299.99953 * 1 2 3 26 26 H 1.00901 * 111.00281 * 123.95258 * 2 1 3 27 27 H 1.08995 * 109.47577 * 35.00233 * 3 2 1 28 28 H 1.09001 * 109.47384 * 60.00090 * 4 3 2 29 29 H 1.09005 * 109.47148 * 299.99995 * 4 3 2 30 30 H 1.09005 * 109.46807 * 299.99945 * 5 4 3 31 31 H 1.08995 * 109.47235 * 179.97438 * 5 4 3 32 32 H 1.08996 * 109.47047 * 60.00815 * 6 5 4 33 33 H 1.08993 * 109.47529 * 296.06260 * 8 7 6 34 34 H 1.09002 * 109.47235 * 56.06896 * 8 7 6 35 35 H 0.97000 * 119.99910 * 179.97438 * 12 11 9 36 36 H 1.09004 * 109.47071 * 173.70217 * 17 7 6 37 37 H 1.08996 * 109.47272 * 293.71023 * 17 7 6 38 38 H 1.08999 * 109.47292 * 187.15249 * 18 17 7 39 39 H 1.09001 * 109.47554 * 307.15441 * 18 17 7 40 40 H 1.09003 * 109.47008 * 179.97438 * 20 19 18 41 41 H 1.08997 * 109.46817 * 299.99852 * 20 19 18 42 42 H 1.09002 * 109.46786 * 60.00205 * 20 19 18 43 43 H 1.08996 * 109.46974 * 180.02562 * 21 6 5 44 44 H 1.09005 * 109.47148 * 300.00331 * 21 6 5 45 45 H 1.09005 * 109.46850 * 60.00227 * 22 21 6 46 46 H 1.09004 * 109.46936 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 2.0607 1.8927 -1.4370 5 6 2.6095 3.3209 -1.4371 6 6 4.0130 3.3279 -0.8277 7 7 4.5397 4.6993 -0.8272 8 6 4.5290 5.2677 -2.1818 9 6 4.9836 6.7035 -2.1275 10 1 5.1745 7.1739 -1.1744 11 6 5.1561 7.4165 -3.2950 12 7 4.9243 6.8436 -4.4558 13 14 5.7204 9.1960 -3.2279 14 1 5.9125 9.6013 -1.8122 15 1 7.0043 9.3362 -3.9609 16 1 4.6937 10.0649 -3.8571 17 6 5.8886 4.7449 -0.2473 18 6 6.7888 3.7413 -0.9705 19 8 6.9901 4.1677 -2.3195 20 6 7.8222 3.2954 -3.0868 21 6 3.9476 2.8067 0.6093 22 6 3.3987 1.3786 0.6094 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8306 -0.5261 0.7814 27 1 1.3397 2.0124 0.5894 28 1 1.0610 1.8872 -1.8713 29 1 2.7165 1.2518 -2.0265 30 1 1.9541 3.9620 -0.8475 31 1 2.6565 3.6920 -2.4609 32 1 4.6683 2.6869 -1.4173 33 1 5.2029 4.6971 -2.8207 34 1 3.5181 5.2219 -2.5871 35 1 5.0453 7.3453 -5.2771 36 1 6.2989 5.7484 -0.3605 37 1 5.8377 4.4904 0.8113 38 1 7.7504 3.6825 -0.4607 39 1 6.3151 2.7596 -0.9668 40 1 7.9254 3.6884 -4.0983 41 1 8.8052 3.2279 -2.6208 42 1 7.3702 2.3043 -3.1269 43 1 4.9473 2.8122 1.0436 44 1 3.2922 3.4479 1.1989 45 1 4.0542 0.7375 0.0198 46 1 3.3526 1.0071 1.6331 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097913326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:46 Heat of formation + Delta-G solvation = -63.553406 kcal Electronic energy + Delta-G solvation = -22658.541999 eV Core-core repulsion = 19582.178142 eV Total energy + Delta-G solvation = -3076.363857 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69781 -38.90819 -37.29149 -35.10145 -34.13437 -32.05250 -30.38362 -29.87807 -27.71521 -26.95118 -25.42613 -24.58910 -23.26272 -22.78544 -21.15393 -20.23364 -18.44033 -17.50679 -17.19324 -16.85214 -16.59291 -16.18623 -15.83517 -15.67631 -15.30556 -15.19071 -14.52547 -14.46960 -14.13591 -13.88044 -13.50644 -13.28242 -13.23519 -12.96498 -12.83163 -12.74513 -12.47290 -12.41439 -12.33066 -12.12163 -11.96071 -11.93076 -11.72618 -11.65899 -11.22843 -10.95679 -10.74967 -10.53763 -10.24025 -9.36057 -8.67394 -8.04048 -6.08054 1.41591 1.41876 1.54212 2.48239 3.03663 3.22148 3.30484 3.52303 3.76988 3.85847 4.20088 4.24904 4.30245 4.35273 4.42741 4.46142 4.51779 4.53874 4.57815 4.61015 4.61438 4.64591 4.69121 4.74416 4.83500 4.90469 4.98516 5.05873 5.08577 5.18430 5.22625 5.29978 5.33283 5.42006 5.53442 5.57424 5.75903 5.87547 6.10808 6.27533 6.48805 6.52600 6.56473 6.89381 7.09831 7.57318 9.07429 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.005240 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.568624 B = 5342.458525 C = 5899.515450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.699 5.699 3 C 0.094 3.906 4 C -0.093 4.093 5 C -0.107 4.107 6 C 0.086 3.914 7 N -0.538 5.538 8 C 0.198 3.802 9 C -0.500 4.500 10 H 0.052 0.948 11 C 0.005 3.995 12 N -0.933 5.933 13 Si 0.954 3.046 14 H -0.266 1.266 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.060 3.940 18 C 0.025 3.975 19 O -0.390 6.390 20 C 0.027 3.973 21 C -0.101 4.101 22 C -0.108 4.108 23 H 0.054 0.946 24 H 0.080 0.920 25 H 0.026 0.974 26 H 0.351 0.649 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.022 0.978 33 H 0.013 0.987 34 H -0.009 1.009 35 H 0.256 0.744 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.042 0.958 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 -14.285 11.389 18.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.331 5.331 3 C -0.016 4.016 4 C -0.132 4.132 5 C -0.146 4.146 6 C -0.022 4.022 7 N -0.261 5.261 8 C 0.073 3.927 9 C -0.539 4.539 10 H 0.070 0.930 11 C -0.192 4.192 12 N -0.575 5.575 13 Si 0.781 3.219 14 H -0.190 1.190 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.068 4.068 18 C -0.052 4.052 19 O -0.309 6.309 20 C -0.070 4.070 21 C -0.139 4.139 22 C -0.146 4.146 23 H 0.073 0.927 24 H 0.099 0.901 25 H 0.045 0.955 26 H 0.170 0.830 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.030 0.970 34 H 0.008 0.992 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.121 0.879 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.106 -13.863 10.762 17.676 hybrid contribution 0.683 0.778 -0.342 1.090 sum -1.424 -13.085 10.420 16.788 Atomic orbital electron populations 1.22252 0.87291 1.02449 1.00247 1.60355 1.08416 1.13749 1.50549 1.21461 0.95859 0.89047 0.95237 1.21394 1.00342 0.94206 0.97244 1.21528 0.96369 0.97005 0.99688 1.21623 0.94634 0.89129 0.96857 1.62243 1.21653 1.18284 1.23961 1.19617 0.94069 0.93958 0.85080 1.21421 1.42989 0.97521 0.91953 0.92967 1.25681 0.96284 1.02071 0.95176 1.70105 1.51682 1.37947 0.97733 0.85565 0.77628 0.80584 0.78161 1.19015 1.20999 1.20881 1.22252 0.87523 0.99198 0.97817 1.23390 0.99581 0.98766 0.83501 1.88391 1.69311 1.49635 1.23592 1.22762 0.94047 0.93848 0.96318 1.21515 1.01796 0.95883 0.94718 1.21626 0.95232 0.96381 1.01407 0.92698 0.90123 0.95543 0.83037 0.93968 0.92430 0.92559 0.92467 0.94606 0.95974 0.96967 0.99158 0.93477 0.91898 0.87939 0.92135 0.92948 0.91203 0.92707 0.93972 0.90792 0.91595 0.91529 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.50 127.69 1.34 1.80 16 2 N -0.70 -13.63 6.66 -514.64 -3.43 -17.06 16 3 C 0.09 2.14 2.49 44.91 0.11 2.26 16 4 C -0.09 -2.69 5.42 30.59 0.17 -2.52 16 5 C -0.11 -3.87 4.85 30.60 0.15 -3.73 16 6 C 0.09 3.03 1.40 44.92 0.06 3.10 16 7 N -0.54 -23.13 4.62 -875.52 -4.04 -27.17 16 8 C 0.20 10.76 3.93 85.56 0.34 11.10 16 9 C -0.50 -29.18 8.21 25.60 0.21 -28.97 16 10 H 0.05 3.02 6.96 -2.91 -0.02 3.00 16 11 C 0.00 0.28 5.46 84.66 0.46 0.74 16 12 N -0.93 -58.22 13.29 21.45 0.28 -57.93 16 13 Si 0.95 46.39 29.54 68.60 2.03 48.42 16 14 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 15 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 16 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 17 C 0.06 2.29 5.20 86.30 0.45 2.74 16 18 C 0.03 0.89 5.66 71.98 0.41 1.30 16 19 O -0.39 -16.97 7.60 -148.98 -1.13 -18.10 16 20 C 0.03 0.90 11.01 113.37 1.25 2.15 16 21 C -0.10 -2.63 4.94 30.59 0.15 -2.48 16 22 C -0.11 -2.26 5.19 30.59 0.16 -2.10 16 23 H 0.05 1.05 7.44 -2.39 -0.02 1.04 16 24 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.03 0.42 8.06 -2.39 -0.02 0.40 16 26 H 0.35 5.38 8.43 -89.69 -0.76 4.62 16 27 H 0.04 1.00 7.80 -2.39 -0.02 0.98 16 28 H 0.06 1.62 7.45 -2.39 -0.02 1.61 16 29 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 30 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.04 1.54 6.26 -2.39 -0.01 1.53 16 32 H 0.02 0.85 6.06 -2.39 -0.01 0.83 16 33 H 0.01 0.75 5.32 -2.39 -0.01 0.74 16 34 H -0.01 -0.57 6.01 -2.39 -0.01 -0.58 16 35 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 36 H 0.06 2.77 6.30 -2.38 -0.02 2.76 16 37 H 0.10 3.09 6.66 -2.39 -0.02 3.08 16 38 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.05 1.70 5.89 -2.39 -0.01 1.68 16 40 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.07 1.75 6.53 -2.39 -0.02 1.73 16 44 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 46 H 0.09 1.36 8.12 -2.38 -0.02 1.34 16 Total: -1.00 -68.79 342.18 -0.85 -69.64 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.19 Total: 16.82 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: 5.25 Total: -14.62 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -7.19 Total: -102.16 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -1.13 Total: -18.10 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -68.79 -0.85 -69.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097913326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.088 kcal (2) G-P(sol) polarization free energy of solvation -68.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds