Wall clock time and date at job start Mon Mar 30 2020 05:13:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42895 * 114.00262 * 2 1
4 4 C 1.53001 * 109.47215 * 180.02562 * 3 2 1
5 5 N 1.46896 * 109.47210 * 65.00168 * 4 3 2
6 6 C 1.46900 * 111.00102 * 179.97438 * 5 4 3
7 7 C 1.52998 * 109.47344 * 179.97438 * 6 5 4
8 8 H 1.09004 * 109.53481 * 55.10015 * 7 6 5
9 9 C 1.53119 * 109.50208 * 295.00152 * 7 6 5
10 10 C 1.53126 * 109.16048 * 182.40224 * 9 7 6
11 11 C 1.53034 * 109.27454 * 57.65518 * 10 9 7
12 12 N 1.46845 * 109.52676 * 300.81918 * 11 10 9
13 13 C 1.46898 * 111.00565 * 185.84030 * 12 11 10
14 14 C 1.53004 * 109.46850 * 45.79157 * 13 12 11
15 15 C 1.50697 * 109.47487 * 180.02562 * 14 13 12
16 16 H 1.08008 * 119.99740 * 359.97438 * 15 14 13
17 17 C 1.37870 * 120.00303 * 180.02562 * 15 14 13
18 18 N 1.31521 * 120.00053 * 180.02562 * 17 15 14
19 19 Si 1.86804 * 120.00135 * 359.97438 * 17 15 14
20 20 H 1.48498 * 109.46922 * 90.00078 * 19 17 15
21 21 H 1.48498 * 109.47276 * 209.99762 * 19 17 15
22 22 H 1.48498 * 109.46861 * 330.00335 * 19 17 15
23 23 C 1.46850 * 111.19654 * 61.74248 * 12 11 10
24 24 H 1.09005 * 109.46561 * 299.99998 * 1 2 3
25 25 H 1.09000 * 109.47234 * 59.99186 * 1 2 3
26 26 H 1.08995 * 109.47312 * 179.97438 * 1 2 3
27 27 H 1.08997 * 109.47155 * 60.00570 * 3 2 1
28 28 H 1.09000 * 109.47296 * 300.00223 * 3 2 1
29 29 H 1.08997 * 109.47096 * 304.99619 * 4 3 2
30 30 H 1.09002 * 109.47042 * 185.00106 * 4 3 2
31 31 H 1.00904 * 111.00237 * 56.04559 * 5 4 3
32 32 H 1.09004 * 109.46961 * 59.99810 * 6 5 4
33 33 H 1.08995 * 109.47302 * 300.00123 * 6 5 4
34 34 H 1.08999 * 109.52185 * 62.50116 * 9 7 6
35 35 H 1.09000 * 109.57842 * 302.33810 * 9 7 6
36 36 H 1.08997 * 109.50129 * 177.59820 * 10 9 7
37 37 H 1.09006 * 109.50177 * 297.71578 * 10 9 7
38 38 H 1.08995 * 109.46502 * 60.83953 * 11 10 9
39 39 H 1.09005 * 109.46032 * 180.80589 * 11 10 9
40 40 H 1.08995 * 109.47744 * 165.78777 * 13 12 11
41 41 H 1.09001 * 109.47160 * 285.79742 * 13 12 11
42 42 H 1.09006 * 109.47073 * 300.00088 * 14 13 12
43 43 H 1.08999 * 109.47451 * 60.00087 * 14 13 12
44 44 H 0.96995 * 119.99995 * 180.02562 * 18 17 15
45 45 H 1.09005 * 109.46186 * 178.24176 * 23 12 11
46 46 H 1.09004 * 109.45360 * 58.27331 * 23 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5355 1.1845 -0.0006
5 7 3.9769 0.5626 -1.2561
6 6 5.4395 0.4307 -1.2925
7 6 5.8602 -0.2201 -2.6118
8 1 5.4567 0.3536 -3.4462
9 6 5.3231 -1.6528 -2.6691
10 6 5.7988 -2.3164 -3.9646
11 6 7.3279 -2.2846 -4.0165
12 7 7.7921 -0.8926 -3.9594
13 6 9.2471 -0.8147 -4.1461
14 6 9.6584 -1.7014 -5.3232
15 6 11.1511 -1.6220 -5.5145
16 1 11.7468 -1.0009 -4.8619
17 6 11.7561 -2.3414 -6.5230
18 7 13.0589 -2.2725 -6.6896
19 14 10.7257 -3.4151 -7.6521
20 1 10.2828 -2.6185 -8.8244
21 1 11.5382 -4.5684 -8.1159
22 1 9.5370 -3.9120 -6.9137
23 6 7.3876 -0.2491 -2.7029
24 1 -0.3632 0.5139 0.8900
25 1 -0.3634 0.5140 -0.8899
26 1 -0.3634 -1.0276 -0.0005
27 1 1.6887 1.8463 0.8900
28 1 1.6886 1.8463 -0.8899
29 1 3.8515 0.5681 0.8409
30 1 3.9786 2.1764 0.0889
31 1 3.6409 1.0809 -2.0541
32 1 5.7691 -0.1908 -0.4599
33 1 5.8955 1.4174 -1.2121
34 1 4.2334 -1.6344 -2.6482
35 1 5.6944 -2.2167 -1.8134
36 1 5.4551 -3.3504 -3.9912
37 1 5.3943 -1.7757 -4.8203
38 1 7.7317 -2.8372 -3.1681
39 1 7.6694 -2.7435 -4.9443
40 1 9.5324 0.2170 -4.3514
41 1 9.7484 -1.1571 -3.2408
42 1 9.3731 -2.7332 -5.1179
43 1 9.1571 -1.3591 -6.2285
44 1 13.4845 -2.7783 -7.3993
45 1 7.7724 0.7704 -2.6767
46 1 7.7911 -0.8113 -1.8607
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000104427952.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:13:24
Heat of formation + Delta-G solvation = -55.632611 kcal
Electronic energy + Delta-G solvation = -20998.106711 eV
Core-core repulsion = 17922.086325 eV
Total energy + Delta-G solvation = -3076.020386 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-39.11102 -38.27327 -36.29491 -34.10062 -32.46903 -31.50187 -29.92400 -28.83111
-26.49356 -25.28363 -24.59602 -22.62822 -22.16382 -21.81749 -19.69089 -19.27703
-17.03758 -16.90955 -16.31722 -15.84867 -15.19504 -15.00931 -14.90356 -14.47446
-14.19624 -14.09280 -13.87294 -13.36804 -13.14440 -12.81153 -12.69428 -12.45846
-12.19207 -12.04656 -11.89761 -11.58210 -11.27453 -11.23404 -11.00295 -10.83673
-10.49577 -10.22866 -10.07328 -10.06734 -9.96859 -9.70149 -9.58815 -9.09580
-8.55580 -8.51068 -7.73164 -6.02638 -4.00581 3.33858 3.40659 3.44634
3.48823 3.87125 4.45818 4.47572 4.68894 4.79311 4.88845 5.00207
5.03088 5.04754 5.11171 5.13981 5.21668 5.31561 5.37621 5.42907
5.49012 5.57273 5.63402 5.68027 5.72566 5.87489 6.00323 6.06105
6.13446 6.27008 6.29668 6.34806 6.43570 6.56071 6.64624 6.76891
6.78384 6.91146 7.18947 7.20429 7.38714 7.62714 7.72002 7.89218
8.55291 9.01539 9.59793 11.10761
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.044951 B = 0.002917 C = 0.002779
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 622.754422 B = 9597.434452 C =10074.445647
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.374 6.374
3 C 0.064 3.936
4 C 0.059 3.941
5 N -0.678 5.678
6 C 0.065 3.935
7 C -0.080 4.080
8 H 0.075 0.925
9 C -0.103 4.103
10 C -0.119 4.119
11 C 0.049 3.951
12 N -0.541 5.541
13 C 0.071 3.929
14 C -0.014 4.014
15 C -0.520 4.520
16 H 0.071 0.929
17 C 0.066 3.934
18 N -0.904 5.904
19 Si 0.882 3.118
20 H -0.276 1.276
21 H -0.289 1.289
22 H -0.265 1.265
23 C 0.062 3.938
24 H 0.036 0.964
25 H 0.039 0.961
26 H 0.085 0.915
27 H 0.051 0.949
28 H 0.047 0.953
29 H 0.080 0.920
30 H 0.043 0.957
31 H 0.339 0.661
32 H 0.071 0.929
33 H 0.029 0.971
34 H 0.071 0.929
35 H 0.052 0.948
36 H 0.060 0.940
37 H 0.066 0.934
38 H 0.027 0.973
39 H 0.085 0.915
40 H 0.067 0.933
41 H 0.025 0.975
42 H 0.019 0.981
43 H 0.020 0.980
44 H 0.263 0.737
45 H 0.068 0.932
46 H 0.028 0.972
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -23.998 6.372 13.303 28.168
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.293 6.293
3 C -0.013 4.013
4 C -0.070 4.070
5 N -0.309 5.309
6 C -0.065 4.065
7 C -0.099 4.099
8 H 0.094 0.906
9 C -0.140 4.140
10 C -0.157 4.157
11 C -0.079 4.079
12 N -0.266 5.266
13 C -0.056 4.056
14 C -0.052 4.052
15 C -0.558 4.558
16 H 0.089 0.911
17 C -0.135 4.135
18 N -0.543 5.543
19 Si 0.709 3.291
20 H -0.202 1.202
21 H -0.215 1.215
22 H -0.190 1.190
23 C -0.067 4.067
24 H 0.055 0.945
25 H 0.057 0.943
26 H 0.103 0.897
27 H 0.069 0.931
28 H 0.065 0.935
29 H 0.099 0.901
30 H 0.061 0.939
31 H 0.157 0.843
32 H 0.089 0.911
33 H 0.047 0.953
34 H 0.090 0.910
35 H 0.071 0.929
36 H 0.079 0.921
37 H 0.085 0.915
38 H 0.045 0.955
39 H 0.103 0.897
40 H 0.085 0.915
41 H 0.043 0.957
42 H 0.037 0.963
43 H 0.038 0.962
44 H 0.072 0.928
45 H 0.086 0.914
46 H 0.046 0.954
Dipole moment (debyes) X Y Z Total
from point charges -24.047 5.749 13.046 27.955
hybrid contribution 0.134 0.227 -0.100 0.282
sum -23.913 5.976 12.946 27.841
Atomic orbital electron populations
1.22733 0.81648 1.02728 0.99558 1.88026 1.18917 1.27085 1.95224
1.22546 0.93654 0.85267 0.99827 1.21970 0.93046 0.97722 0.94271
1.60368 1.11119 1.55822 1.03627 1.21988 0.87014 0.98808 0.98658
1.21149 0.95104 0.97239 0.96389 0.90646 1.21486 1.00909 0.94536
0.97102 1.21645 0.95625 1.00069 0.98336 1.22199 0.94584 0.89535
1.01593 1.62017 1.15159 1.16239 1.33144 1.22100 0.83703 1.01043
0.98716 1.19716 0.97071 0.94685 0.93696 1.21083 0.90588 1.28217
1.15957 0.91121 1.25008 0.94811 0.96434 0.97204 1.69917 1.09141
1.42455 1.32799 0.86749 0.80629 0.80395 0.81335 1.20221 1.21478
1.19008 1.22013 0.94408 0.99217 0.91059 0.94499 0.94262 0.89675
0.93119 0.93471 0.90141 0.93877 0.84333 0.91078 0.95320 0.91038
0.92894 0.92129 0.91521 0.95482 0.89716 0.91455 0.95693 0.96303
0.96159 0.92752 0.91386 0.95389
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.20 11.01 101.05 1.11 1.31 16
2 O -0.37 -3.70 10.65 -35.23 -0.38 -4.07 16
3 C 0.06 0.48 6.22 37.16 0.23 0.71 16
4 C 0.06 0.48 6.07 -3.83 -0.02 0.46 16
5 N -0.68 -6.50 5.96 -113.78 -0.68 -7.17 16
6 C 0.06 0.67 5.08 -3.82 -0.02 0.65 16
7 C -0.08 -0.97 2.49 -90.54 -0.23 -1.20 16
8 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
9 C -0.10 -1.31 5.14 -26.60 -0.14 -1.44 16
10 C -0.12 -1.67 6.09 -26.65 -0.16 -1.83 16
11 C 0.05 0.84 4.85 -3.84 -0.02 0.82 16
12 N -0.54 -9.68 4.81 -234.67 -1.13 -10.81 16
13 C 0.07 1.49 5.21 -3.82 -0.02 1.47 16
14 C -0.01 -0.35 3.29 -27.88 -0.09 -0.44 16
15 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16
16 H 0.07 2.19 7.99 -52.48 -0.42 1.78 16
17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16
18 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16
19 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16
20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
22 H -0.27 -6.38 6.54 56.52 0.37 -6.02 16
23 C 0.06 0.91 4.71 -3.83 -0.02 0.89 16
24 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16
25 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16
26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16
27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16
28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16
29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16
31 H 0.34 2.99 8.73 -39.29 -0.34 2.64 16
32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
33 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16
34 H 0.07 0.89 7.83 -51.93 -0.41 0.49 16
35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16
36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16
37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
38 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16
39 H 0.08 1.61 5.81 -51.93 -0.30 1.30 16
40 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16
41 H 0.02 0.53 8.08 -51.93 -0.42 0.11 16
42 H 0.02 0.46 5.27 -51.93 -0.27 0.19 16
43 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16
44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16
45 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16
46 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16
LS Contribution 356.87 15.07 5.38 5.38
Total: -1.00 -31.60 356.87 -9.41 -41.01
By element:
Atomic # 1 Polarization: 6.73 SS G_CDS: -8.91 Total: -2.18 kcal
Atomic # 6 Polarization: -12.35 SS G_CDS: 0.20 Total: -12.15 kcal
Atomic # 7 Polarization: -44.41 SS G_CDS: -1.03 Total: -45.44 kcal
Atomic # 8 Polarization: -3.70 SS G_CDS: -0.38 Total: -4.07 kcal
Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal
Total LS contribution 5.38 Total: 5.38 kcal
Total: -31.60 -9.41 -41.01 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000104427952.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.623 kcal
(2) G-P(sol) polarization free energy of solvation -31.599 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.222 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.633 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds