Wall clock time and date at job start Mon Mar 30 2020 05:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00262 * 2 1 4 4 C 1.53001 * 109.47215 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47210 * 65.00168 * 4 3 2 6 6 C 1.46900 * 111.00102 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47344 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.53481 * 55.10015 * 7 6 5 9 9 C 1.53119 * 109.50208 * 295.00152 * 7 6 5 10 10 C 1.53126 * 109.16048 * 182.40224 * 9 7 6 11 11 C 1.53034 * 109.27454 * 57.65518 * 10 9 7 12 12 N 1.46845 * 109.52676 * 300.81918 * 11 10 9 13 13 C 1.46898 * 111.00565 * 185.84030 * 12 11 10 14 14 C 1.53004 * 109.46850 * 45.79157 * 13 12 11 15 15 C 1.50697 * 109.47487 * 180.02562 * 14 13 12 16 16 H 1.08008 * 119.99740 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00303 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00053 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00135 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46922 * 90.00078 * 19 17 15 21 21 H 1.48498 * 109.47276 * 209.99762 * 19 17 15 22 22 H 1.48498 * 109.46861 * 330.00335 * 19 17 15 23 23 C 1.46850 * 111.19654 * 61.74248 * 12 11 10 24 24 H 1.09005 * 109.46561 * 299.99998 * 1 2 3 25 25 H 1.09000 * 109.47234 * 59.99186 * 1 2 3 26 26 H 1.08995 * 109.47312 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47155 * 60.00570 * 3 2 1 28 28 H 1.09000 * 109.47296 * 300.00223 * 3 2 1 29 29 H 1.08997 * 109.47096 * 304.99619 * 4 3 2 30 30 H 1.09002 * 109.47042 * 185.00106 * 4 3 2 31 31 H 1.00904 * 111.00237 * 56.04559 * 5 4 3 32 32 H 1.09004 * 109.46961 * 59.99810 * 6 5 4 33 33 H 1.08995 * 109.47302 * 300.00123 * 6 5 4 34 34 H 1.08999 * 109.52185 * 62.50116 * 9 7 6 35 35 H 1.09000 * 109.57842 * 302.33810 * 9 7 6 36 36 H 1.08997 * 109.50129 * 177.59820 * 10 9 7 37 37 H 1.09006 * 109.50177 * 297.71578 * 10 9 7 38 38 H 1.08995 * 109.46502 * 60.83953 * 11 10 9 39 39 H 1.09005 * 109.46032 * 180.80589 * 11 10 9 40 40 H 1.08995 * 109.47744 * 165.78777 * 13 12 11 41 41 H 1.09001 * 109.47160 * 285.79742 * 13 12 11 42 42 H 1.09006 * 109.47073 * 300.00088 * 14 13 12 43 43 H 1.08999 * 109.47451 * 60.00087 * 14 13 12 44 44 H 0.96995 * 119.99995 * 180.02562 * 18 17 15 45 45 H 1.09005 * 109.46186 * 178.24176 * 23 12 11 46 46 H 1.09004 * 109.45360 * 58.27331 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9769 0.5626 -1.2561 6 6 5.4395 0.4307 -1.2925 7 6 5.8602 -0.2201 -2.6118 8 1 5.4567 0.3536 -3.4462 9 6 5.3231 -1.6528 -2.6691 10 6 5.7988 -2.3164 -3.9646 11 6 7.3279 -2.2846 -4.0165 12 7 7.7921 -0.8926 -3.9594 13 6 9.2471 -0.8147 -4.1461 14 6 9.6584 -1.7014 -5.3232 15 6 11.1511 -1.6220 -5.5145 16 1 11.7468 -1.0009 -4.8619 17 6 11.7561 -2.3414 -6.5230 18 7 13.0589 -2.2725 -6.6896 19 14 10.7257 -3.4151 -7.6521 20 1 10.2828 -2.6185 -8.8244 21 1 11.5382 -4.5684 -8.1159 22 1 9.5370 -3.9120 -6.9137 23 6 7.3876 -0.2491 -2.7029 24 1 -0.3632 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8463 -0.8899 29 1 3.8515 0.5681 0.8409 30 1 3.9786 2.1764 0.0889 31 1 3.6409 1.0809 -2.0541 32 1 5.7691 -0.1908 -0.4599 33 1 5.8955 1.4174 -1.2121 34 1 4.2334 -1.6344 -2.6482 35 1 5.6944 -2.2167 -1.8134 36 1 5.4551 -3.3504 -3.9912 37 1 5.3943 -1.7757 -4.8203 38 1 7.7317 -2.8372 -3.1681 39 1 7.6694 -2.7435 -4.9443 40 1 9.5324 0.2170 -4.3514 41 1 9.7484 -1.1571 -3.2408 42 1 9.3731 -2.7332 -5.1179 43 1 9.1571 -1.3591 -6.2285 44 1 13.4845 -2.7783 -7.3993 45 1 7.7724 0.7704 -2.6767 46 1 7.7911 -0.8113 -1.8607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104427952.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:24 Heat of formation + Delta-G solvation = -55.632611 kcal Electronic energy + Delta-G solvation = -20998.106711 eV Core-core repulsion = 17922.086325 eV Total energy + Delta-G solvation = -3076.020386 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.11102 -38.27327 -36.29491 -34.10062 -32.46903 -31.50187 -29.92400 -28.83111 -26.49356 -25.28363 -24.59602 -22.62822 -22.16382 -21.81749 -19.69089 -19.27703 -17.03758 -16.90955 -16.31722 -15.84867 -15.19504 -15.00931 -14.90356 -14.47446 -14.19624 -14.09280 -13.87294 -13.36804 -13.14440 -12.81153 -12.69428 -12.45846 -12.19207 -12.04656 -11.89761 -11.58210 -11.27453 -11.23404 -11.00295 -10.83673 -10.49577 -10.22866 -10.07328 -10.06734 -9.96859 -9.70149 -9.58815 -9.09580 -8.55580 -8.51068 -7.73164 -6.02638 -4.00581 3.33858 3.40659 3.44634 3.48823 3.87125 4.45818 4.47572 4.68894 4.79311 4.88845 5.00207 5.03088 5.04754 5.11171 5.13981 5.21668 5.31561 5.37621 5.42907 5.49012 5.57273 5.63402 5.68027 5.72566 5.87489 6.00323 6.06105 6.13446 6.27008 6.29668 6.34806 6.43570 6.56071 6.64624 6.76891 6.78384 6.91146 7.18947 7.20429 7.38714 7.62714 7.72002 7.89218 8.55291 9.01539 9.59793 11.10761 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.044951 B = 0.002917 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.754422 B = 9597.434452 C =10074.445647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.064 3.936 4 C 0.059 3.941 5 N -0.678 5.678 6 C 0.065 3.935 7 C -0.080 4.080 8 H 0.075 0.925 9 C -0.103 4.103 10 C -0.119 4.119 11 C 0.049 3.951 12 N -0.541 5.541 13 C 0.071 3.929 14 C -0.014 4.014 15 C -0.520 4.520 16 H 0.071 0.929 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.882 3.118 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.265 1.265 23 C 0.062 3.938 24 H 0.036 0.964 25 H 0.039 0.961 26 H 0.085 0.915 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.080 0.920 30 H 0.043 0.957 31 H 0.339 0.661 32 H 0.071 0.929 33 H 0.029 0.971 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.027 0.973 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.025 0.975 42 H 0.019 0.981 43 H 0.020 0.980 44 H 0.263 0.737 45 H 0.068 0.932 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.998 6.372 13.303 28.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C -0.013 4.013 4 C -0.070 4.070 5 N -0.309 5.309 6 C -0.065 4.065 7 C -0.099 4.099 8 H 0.094 0.906 9 C -0.140 4.140 10 C -0.157 4.157 11 C -0.079 4.079 12 N -0.266 5.266 13 C -0.056 4.056 14 C -0.052 4.052 15 C -0.558 4.558 16 H 0.089 0.911 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.709 3.291 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.190 1.190 23 C -0.067 4.067 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.099 0.901 30 H 0.061 0.939 31 H 0.157 0.843 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.103 0.897 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -24.047 5.749 13.046 27.955 hybrid contribution 0.134 0.227 -0.100 0.282 sum -23.913 5.976 12.946 27.841 Atomic orbital electron populations 1.22733 0.81648 1.02728 0.99558 1.88026 1.18917 1.27085 1.95224 1.22546 0.93654 0.85267 0.99827 1.21970 0.93046 0.97722 0.94271 1.60368 1.11119 1.55822 1.03627 1.21988 0.87014 0.98808 0.98658 1.21149 0.95104 0.97239 0.96389 0.90646 1.21486 1.00909 0.94536 0.97102 1.21645 0.95625 1.00069 0.98336 1.22199 0.94584 0.89535 1.01593 1.62017 1.15159 1.16239 1.33144 1.22100 0.83703 1.01043 0.98716 1.19716 0.97071 0.94685 0.93696 1.21083 0.90588 1.28217 1.15957 0.91121 1.25008 0.94811 0.96434 0.97204 1.69917 1.09141 1.42455 1.32799 0.86749 0.80629 0.80395 0.81335 1.20221 1.21478 1.19008 1.22013 0.94408 0.99217 0.91059 0.94499 0.94262 0.89675 0.93119 0.93471 0.90141 0.93877 0.84333 0.91078 0.95320 0.91038 0.92894 0.92129 0.91521 0.95482 0.89716 0.91455 0.95693 0.96303 0.96159 0.92752 0.91386 0.95389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -3.70 10.65 -35.23 -0.38 -4.07 16 3 C 0.06 0.48 6.22 37.16 0.23 0.71 16 4 C 0.06 0.48 6.07 -3.83 -0.02 0.46 16 5 N -0.68 -6.50 5.96 -113.78 -0.68 -7.17 16 6 C 0.06 0.67 5.08 -3.82 -0.02 0.65 16 7 C -0.08 -0.97 2.49 -90.54 -0.23 -1.20 16 8 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 9 C -0.10 -1.31 5.14 -26.60 -0.14 -1.44 16 10 C -0.12 -1.67 6.09 -26.65 -0.16 -1.83 16 11 C 0.05 0.84 4.85 -3.84 -0.02 0.82 16 12 N -0.54 -9.68 4.81 -234.67 -1.13 -10.81 16 13 C 0.07 1.49 5.21 -3.82 -0.02 1.47 16 14 C -0.01 -0.35 3.29 -27.88 -0.09 -0.44 16 15 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 16 H 0.07 2.19 7.99 -52.48 -0.42 1.78 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 19 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.27 -6.38 6.54 56.52 0.37 -6.02 16 23 C 0.06 0.91 4.71 -3.83 -0.02 0.89 16 24 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.34 2.99 8.73 -39.29 -0.34 2.64 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.89 7.83 -51.93 -0.41 0.49 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 1.61 5.81 -51.93 -0.30 1.30 16 40 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 41 H 0.02 0.53 8.08 -51.93 -0.42 0.11 16 42 H 0.02 0.46 5.27 -51.93 -0.27 0.19 16 43 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 46 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 356.87 15.07 5.38 5.38 Total: -1.00 -31.60 356.87 -9.41 -41.01 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -8.91 Total: -2.18 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 0.20 Total: -12.15 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -1.03 Total: -45.44 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -0.38 Total: -4.07 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.60 -9.41 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104427952.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.623 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds