Wall clock time and date at job start Mon Mar 30 2020 05:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00262 * 2 1 4 4 C 1.53001 * 109.47215 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47210 * 65.00168 * 4 3 2 6 6 C 1.46900 * 111.00102 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47344 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.53481 * 55.10015 * 7 6 5 9 9 C 1.53119 * 109.50208 * 295.00152 * 7 6 5 10 10 C 1.53126 * 109.16048 * 182.40224 * 9 7 6 11 11 C 1.53034 * 109.27454 * 57.65518 * 10 9 7 12 12 N 1.46845 * 109.52676 * 300.81918 * 11 10 9 13 13 C 1.46898 * 111.00565 * 185.84030 * 12 11 10 14 14 C 1.53004 * 109.46850 * 45.79157 * 13 12 11 15 15 C 1.50697 * 109.47487 * 180.02562 * 14 13 12 16 16 H 1.08008 * 119.99740 * 359.97438 * 15 14 13 17 17 C 1.37870 * 120.00303 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00053 * 180.02562 * 17 15 14 19 19 Si 1.86804 * 120.00135 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46922 * 90.00078 * 19 17 15 21 21 H 1.48498 * 109.47276 * 209.99762 * 19 17 15 22 22 H 1.48498 * 109.46861 * 330.00335 * 19 17 15 23 23 C 1.46850 * 111.19654 * 61.74248 * 12 11 10 24 24 H 1.09005 * 109.46561 * 299.99998 * 1 2 3 25 25 H 1.09000 * 109.47234 * 59.99186 * 1 2 3 26 26 H 1.08995 * 109.47312 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47155 * 60.00570 * 3 2 1 28 28 H 1.09000 * 109.47296 * 300.00223 * 3 2 1 29 29 H 1.08997 * 109.47096 * 304.99619 * 4 3 2 30 30 H 1.09002 * 109.47042 * 185.00106 * 4 3 2 31 31 H 1.00904 * 111.00237 * 56.04559 * 5 4 3 32 32 H 1.09004 * 109.46961 * 59.99810 * 6 5 4 33 33 H 1.08995 * 109.47302 * 300.00123 * 6 5 4 34 34 H 1.08999 * 109.52185 * 62.50116 * 9 7 6 35 35 H 1.09000 * 109.57842 * 302.33810 * 9 7 6 36 36 H 1.08997 * 109.50129 * 177.59820 * 10 9 7 37 37 H 1.09006 * 109.50177 * 297.71578 * 10 9 7 38 38 H 1.08995 * 109.46502 * 60.83953 * 11 10 9 39 39 H 1.09005 * 109.46032 * 180.80589 * 11 10 9 40 40 H 1.08995 * 109.47744 * 165.78777 * 13 12 11 41 41 H 1.09001 * 109.47160 * 285.79742 * 13 12 11 42 42 H 1.09006 * 109.47073 * 300.00088 * 14 13 12 43 43 H 1.08999 * 109.47451 * 60.00087 * 14 13 12 44 44 H 0.96995 * 119.99995 * 180.02562 * 18 17 15 45 45 H 1.09005 * 109.46186 * 178.24176 * 23 12 11 46 46 H 1.09004 * 109.45360 * 58.27331 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9769 0.5626 -1.2561 6 6 5.4395 0.4307 -1.2925 7 6 5.8602 -0.2201 -2.6118 8 1 5.4567 0.3536 -3.4462 9 6 5.3231 -1.6528 -2.6691 10 6 5.7988 -2.3164 -3.9646 11 6 7.3279 -2.2846 -4.0165 12 7 7.7921 -0.8926 -3.9594 13 6 9.2471 -0.8147 -4.1461 14 6 9.6584 -1.7014 -5.3232 15 6 11.1511 -1.6220 -5.5145 16 1 11.7468 -1.0009 -4.8619 17 6 11.7561 -2.3414 -6.5230 18 7 13.0589 -2.2725 -6.6896 19 14 10.7257 -3.4151 -7.6521 20 1 10.2828 -2.6185 -8.8244 21 1 11.5382 -4.5684 -8.1159 22 1 9.5370 -3.9120 -6.9137 23 6 7.3876 -0.2491 -2.7029 24 1 -0.3632 0.5139 0.8900 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8463 -0.8899 29 1 3.8515 0.5681 0.8409 30 1 3.9786 2.1764 0.0889 31 1 3.6409 1.0809 -2.0541 32 1 5.7691 -0.1908 -0.4599 33 1 5.8955 1.4174 -1.2121 34 1 4.2334 -1.6344 -2.6482 35 1 5.6944 -2.2167 -1.8134 36 1 5.4551 -3.3504 -3.9912 37 1 5.3943 -1.7757 -4.8203 38 1 7.7317 -2.8372 -3.1681 39 1 7.6694 -2.7435 -4.9443 40 1 9.5324 0.2170 -4.3514 41 1 9.7484 -1.1571 -3.2408 42 1 9.3731 -2.7332 -5.1179 43 1 9.1571 -1.3591 -6.2285 44 1 13.4845 -2.7783 -7.3993 45 1 7.7724 0.7704 -2.6767 46 1 7.7911 -0.8113 -1.8607 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104427952.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:23 Heat of formation + Delta-G solvation = -78.522245 kcal Electronic energy + Delta-G solvation = -20999.099280 eV Core-core repulsion = 17922.086325 eV Total energy + Delta-G solvation = -3077.012955 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.30711 -38.93249 -37.26695 -35.61102 -34.31843 -32.55323 -31.62241 -29.74900 -27.08918 -26.93838 -25.69726 -23.98852 -23.16199 -22.84951 -21.14640 -20.55986 -19.07742 -17.62536 -16.93771 -16.82927 -16.45195 -16.21453 -15.89438 -15.85522 -15.65059 -15.20207 -14.96685 -14.72190 -14.39905 -14.21842 -14.05987 -13.67594 -13.19543 -13.12933 -12.87832 -12.83857 -12.56771 -12.44478 -12.04913 -11.96397 -11.90110 -11.83056 -11.74267 -11.47758 -11.41022 -11.09708 -10.94245 -10.75552 -10.52268 -9.27015 -9.18586 -8.31208 -6.35622 1.35804 1.36925 1.49292 2.35182 2.91304 2.97336 3.03969 3.33392 3.85541 3.96836 4.04213 4.16645 4.25322 4.27421 4.38795 4.44688 4.47850 4.52046 4.56669 4.59079 4.60734 4.64387 4.67913 4.73260 4.77941 4.88412 4.90948 4.91916 4.97089 5.01850 5.05580 5.19686 5.24701 5.29690 5.45376 5.46538 5.57466 5.61582 6.05706 6.13463 6.27444 6.33137 6.35661 6.54547 6.71840 7.28928 8.85445 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.044951 B = 0.002917 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.754422 B = 9597.434452 C =10074.445647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.063 3.937 4 C 0.060 3.940 5 N -0.686 5.686 6 C 0.074 3.926 7 C -0.070 4.070 8 H 0.075 0.925 9 C -0.095 4.095 10 C -0.112 4.112 11 C 0.046 3.954 12 N -0.544 5.544 13 C 0.082 3.918 14 C -0.005 4.005 15 C -0.534 4.534 16 H 0.032 0.968 17 C 0.006 3.994 18 N -0.950 5.950 19 Si 0.952 3.048 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.248 1.248 23 C 0.061 3.939 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.344 0.656 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.021 0.979 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.015 0.985 42 H 0.023 0.977 43 H 0.021 0.979 44 H 0.267 0.733 45 H 0.073 0.927 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.818 6.345 13.413 30.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C -0.014 4.014 4 C -0.070 4.070 5 N -0.318 5.318 6 C -0.055 4.055 7 C -0.089 4.089 8 H 0.094 0.906 9 C -0.133 4.133 10 C -0.149 4.149 11 C -0.082 4.082 12 N -0.268 5.268 13 C -0.046 4.046 14 C -0.043 4.043 15 C -0.572 4.572 16 H 0.050 0.950 17 C -0.191 4.191 18 N -0.590 5.590 19 Si 0.775 3.225 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.171 1.171 23 C -0.068 4.068 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.162 0.838 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.040 0.960 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.033 0.967 42 H 0.041 0.959 43 H 0.039 0.961 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -26.894 5.737 13.177 30.493 hybrid contribution 1.053 0.294 -0.064 1.095 sum -25.841 6.031 13.114 29.599 Atomic orbital electron populations 1.22856 0.80355 1.03300 1.00508 1.87972 1.20521 1.28518 1.95463 1.22632 0.93037 0.84711 1.00981 1.22001 0.93691 0.98155 0.93110 1.60332 1.10362 1.56614 1.04533 1.21817 0.87784 0.98857 0.97070 1.21051 0.92940 0.97307 0.97606 0.90621 1.21421 1.01235 0.94476 0.96147 1.21607 0.93004 1.01274 0.99064 1.22235 0.96844 0.88772 1.00315 1.62012 1.12576 1.17025 1.35194 1.21821 0.86051 0.99826 0.96891 1.19580 0.93896 0.95684 0.95106 1.21405 0.92863 1.27554 1.15387 0.95003 1.25994 0.96068 0.98028 0.99043 1.70064 1.11207 1.43825 1.33920 0.85628 0.79278 0.78418 0.79148 1.19102 1.20806 1.17111 1.22116 0.96312 0.99016 0.89328 0.93267 0.93551 0.89407 0.91553 0.92637 0.91150 0.92326 0.83754 0.91627 0.94540 0.90247 0.93290 0.90659 0.91447 0.96043 0.91607 0.91948 0.96669 0.95871 0.96093 0.92408 0.90858 0.95661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.32 10.65 -148.98 -1.59 -8.91 16 3 C 0.06 0.81 6.22 71.98 0.45 1.26 16 4 C 0.06 0.84 6.07 86.30 0.52 1.36 16 5 N -0.69 -11.62 5.96 -513.90 -3.06 -14.68 16 6 C 0.07 1.38 5.08 86.30 0.44 1.82 16 7 C -0.07 -1.57 2.49 -10.74 -0.03 -1.59 16 8 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 9 C -0.10 -2.20 5.14 30.68 0.16 -2.05 16 10 C -0.11 -2.89 6.09 30.65 0.19 -2.70 16 11 C 0.05 1.53 4.85 86.33 0.42 1.94 16 12 N -0.54 -18.92 4.81 -896.37 -4.31 -23.23 16 13 C 0.08 3.44 5.21 86.30 0.45 3.89 16 14 C -0.01 -0.25 3.29 29.85 0.10 -0.15 16 15 C -0.53 -31.72 9.66 25.60 0.25 -31.48 16 16 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 17 C 0.01 0.34 5.47 84.65 0.46 0.80 16 18 N -0.95 -60.57 13.96 21.45 0.30 -60.28 16 19 Si 0.95 45.36 27.47 68.60 1.88 47.24 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 23 C 0.06 1.70 4.71 86.32 0.41 2.11 16 24 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 25 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.34 5.22 8.73 -89.69 -0.78 4.43 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.08 1.77 7.83 -2.39 -0.02 1.75 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 37 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 2.41 5.81 -2.38 -0.01 2.40 16 40 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.02 0.66 8.08 -2.39 -0.02 0.64 16 42 H 0.02 1.12 5.27 -2.38 -0.01 1.10 16 43 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 44 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 45 H 0.07 1.98 8.12 -2.38 -0.02 1.96 16 46 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -68.32 356.87 -1.64 -69.95 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.08 Total: 13.14 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 5.06 Total: -23.24 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -7.07 Total: -98.19 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -1.59 Total: -8.91 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal Total: -68.32 -1.64 -69.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104427952.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.567 kcal (2) G-P(sol) polarization free energy of solvation -68.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds