Wall clock time and date at job start Mon Mar 30 2020 05:13:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42895 * 114.00262 * 2 1
4 4 C 1.53001 * 109.47215 * 180.02562 * 3 2 1
5 5 N 1.46896 * 109.47210 * 65.00168 * 4 3 2
6 6 C 1.46900 * 111.00102 * 179.97438 * 5 4 3
7 7 C 1.52998 * 109.47344 * 179.97438 * 6 5 4
8 8 H 1.09004 * 109.53481 * 55.10015 * 7 6 5
9 9 C 1.53119 * 109.50208 * 295.00152 * 7 6 5
10 10 C 1.53126 * 109.16048 * 182.40224 * 9 7 6
11 11 C 1.53034 * 109.27454 * 57.65518 * 10 9 7
12 12 N 1.46845 * 109.52676 * 300.81918 * 11 10 9
13 13 C 1.46898 * 111.00565 * 185.84030 * 12 11 10
14 14 C 1.53004 * 109.46850 * 45.79157 * 13 12 11
15 15 C 1.50697 * 109.47487 * 180.02562 * 14 13 12
16 16 H 1.08008 * 119.99740 * 359.97438 * 15 14 13
17 17 C 1.37870 * 120.00303 * 180.02562 * 15 14 13
18 18 N 1.31521 * 120.00053 * 180.02562 * 17 15 14
19 19 Si 1.86804 * 120.00135 * 359.97438 * 17 15 14
20 20 H 1.48498 * 109.46922 * 90.00078 * 19 17 15
21 21 H 1.48498 * 109.47276 * 209.99762 * 19 17 15
22 22 H 1.48498 * 109.46861 * 330.00335 * 19 17 15
23 23 C 1.46850 * 111.19654 * 61.74248 * 12 11 10
24 24 H 1.09005 * 109.46561 * 299.99998 * 1 2 3
25 25 H 1.09000 * 109.47234 * 59.99186 * 1 2 3
26 26 H 1.08995 * 109.47312 * 179.97438 * 1 2 3
27 27 H 1.08997 * 109.47155 * 60.00570 * 3 2 1
28 28 H 1.09000 * 109.47296 * 300.00223 * 3 2 1
29 29 H 1.08997 * 109.47096 * 304.99619 * 4 3 2
30 30 H 1.09002 * 109.47042 * 185.00106 * 4 3 2
31 31 H 1.00904 * 111.00237 * 56.04559 * 5 4 3
32 32 H 1.09004 * 109.46961 * 59.99810 * 6 5 4
33 33 H 1.08995 * 109.47302 * 300.00123 * 6 5 4
34 34 H 1.08999 * 109.52185 * 62.50116 * 9 7 6
35 35 H 1.09000 * 109.57842 * 302.33810 * 9 7 6
36 36 H 1.08997 * 109.50129 * 177.59820 * 10 9 7
37 37 H 1.09006 * 109.50177 * 297.71578 * 10 9 7
38 38 H 1.08995 * 109.46502 * 60.83953 * 11 10 9
39 39 H 1.09005 * 109.46032 * 180.80589 * 11 10 9
40 40 H 1.08995 * 109.47744 * 165.78777 * 13 12 11
41 41 H 1.09001 * 109.47160 * 285.79742 * 13 12 11
42 42 H 1.09006 * 109.47073 * 300.00088 * 14 13 12
43 43 H 1.08999 * 109.47451 * 60.00087 * 14 13 12
44 44 H 0.96995 * 119.99995 * 180.02562 * 18 17 15
45 45 H 1.09005 * 109.46186 * 178.24176 * 23 12 11
46 46 H 1.09004 * 109.45360 * 58.27331 * 23 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5355 1.1845 -0.0006
5 7 3.9769 0.5626 -1.2561
6 6 5.4395 0.4307 -1.2925
7 6 5.8602 -0.2201 -2.6118
8 1 5.4567 0.3536 -3.4462
9 6 5.3231 -1.6528 -2.6691
10 6 5.7988 -2.3164 -3.9646
11 6 7.3279 -2.2846 -4.0165
12 7 7.7921 -0.8926 -3.9594
13 6 9.2471 -0.8147 -4.1461
14 6 9.6584 -1.7014 -5.3232
15 6 11.1511 -1.6220 -5.5145
16 1 11.7468 -1.0009 -4.8619
17 6 11.7561 -2.3414 -6.5230
18 7 13.0589 -2.2725 -6.6896
19 14 10.7257 -3.4151 -7.6521
20 1 10.2828 -2.6185 -8.8244
21 1 11.5382 -4.5684 -8.1159
22 1 9.5370 -3.9120 -6.9137
23 6 7.3876 -0.2491 -2.7029
24 1 -0.3632 0.5139 0.8900
25 1 -0.3634 0.5140 -0.8899
26 1 -0.3634 -1.0276 -0.0005
27 1 1.6887 1.8463 0.8900
28 1 1.6886 1.8463 -0.8899
29 1 3.8515 0.5681 0.8409
30 1 3.9786 2.1764 0.0889
31 1 3.6409 1.0809 -2.0541
32 1 5.7691 -0.1908 -0.4599
33 1 5.8955 1.4174 -1.2121
34 1 4.2334 -1.6344 -2.6482
35 1 5.6944 -2.2167 -1.8134
36 1 5.4551 -3.3504 -3.9912
37 1 5.3943 -1.7757 -4.8203
38 1 7.7317 -2.8372 -3.1681
39 1 7.6694 -2.7435 -4.9443
40 1 9.5324 0.2170 -4.3514
41 1 9.7484 -1.1571 -3.2408
42 1 9.3731 -2.7332 -5.1179
43 1 9.1571 -1.3591 -6.2285
44 1 13.4845 -2.7783 -7.3993
45 1 7.7724 0.7704 -2.6767
46 1 7.7911 -0.8113 -1.8607
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000104427952.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:13:23
Heat of formation + Delta-G solvation = -78.522245 kcal
Electronic energy + Delta-G solvation = -20999.099280 eV
Core-core repulsion = 17922.086325 eV
Total energy + Delta-G solvation = -3077.012955 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-40.30711 -38.93249 -37.26695 -35.61102 -34.31843 -32.55323 -31.62241 -29.74900
-27.08918 -26.93838 -25.69726 -23.98852 -23.16199 -22.84951 -21.14640 -20.55986
-19.07742 -17.62536 -16.93771 -16.82927 -16.45195 -16.21453 -15.89438 -15.85522
-15.65059 -15.20207 -14.96685 -14.72190 -14.39905 -14.21842 -14.05987 -13.67594
-13.19543 -13.12933 -12.87832 -12.83857 -12.56771 -12.44478 -12.04913 -11.96397
-11.90110 -11.83056 -11.74267 -11.47758 -11.41022 -11.09708 -10.94245 -10.75552
-10.52268 -9.27015 -9.18586 -8.31208 -6.35622 1.35804 1.36925 1.49292
2.35182 2.91304 2.97336 3.03969 3.33392 3.85541 3.96836 4.04213
4.16645 4.25322 4.27421 4.38795 4.44688 4.47850 4.52046 4.56669
4.59079 4.60734 4.64387 4.67913 4.73260 4.77941 4.88412 4.90948
4.91916 4.97089 5.01850 5.05580 5.19686 5.24701 5.29690 5.45376
5.46538 5.57466 5.61582 6.05706 6.13463 6.27444 6.33137 6.35661
6.54547 6.71840 7.28928 8.85445
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.044951 B = 0.002917 C = 0.002779
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 622.754422 B = 9597.434452 C =10074.445647
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.405 6.405
3 C 0.063 3.937
4 C 0.060 3.940
5 N -0.686 5.686
6 C 0.074 3.926
7 C -0.070 4.070
8 H 0.075 0.925
9 C -0.095 4.095
10 C -0.112 4.112
11 C 0.046 3.954
12 N -0.544 5.544
13 C 0.082 3.918
14 C -0.005 4.005
15 C -0.534 4.534
16 H 0.032 0.968
17 C 0.006 3.994
18 N -0.950 5.950
19 Si 0.952 3.048
20 H -0.266 1.266
21 H -0.282 1.282
22 H -0.248 1.248
23 C 0.061 3.939
24 H 0.049 0.951
25 H 0.046 0.954
26 H 0.087 0.913
27 H 0.066 0.934
28 H 0.055 0.945
29 H 0.070 0.930
30 H 0.059 0.941
31 H 0.344 0.656
32 H 0.065 0.935
33 H 0.036 0.964
34 H 0.079 0.921
35 H 0.048 0.952
36 H 0.075 0.925
37 H 0.067 0.933
38 H 0.021 0.979
39 H 0.066 0.934
40 H 0.062 0.938
41 H 0.015 0.985
42 H 0.023 0.977
43 H 0.021 0.979
44 H 0.267 0.733
45 H 0.073 0.927
46 H 0.025 0.975
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.818 6.345 13.413 30.649
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.325 6.325
3 C -0.014 4.014
4 C -0.070 4.070
5 N -0.318 5.318
6 C -0.055 4.055
7 C -0.089 4.089
8 H 0.094 0.906
9 C -0.133 4.133
10 C -0.149 4.149
11 C -0.082 4.082
12 N -0.268 5.268
13 C -0.046 4.046
14 C -0.043 4.043
15 C -0.572 4.572
16 H 0.050 0.950
17 C -0.191 4.191
18 N -0.590 5.590
19 Si 0.775 3.225
20 H -0.191 1.191
21 H -0.208 1.208
22 H -0.171 1.171
23 C -0.068 4.068
24 H 0.067 0.933
25 H 0.064 0.936
26 H 0.106 0.894
27 H 0.084 0.916
28 H 0.074 0.926
29 H 0.089 0.911
30 H 0.077 0.923
31 H 0.162 0.838
32 H 0.084 0.916
33 H 0.055 0.945
34 H 0.098 0.902
35 H 0.067 0.933
36 H 0.093 0.907
37 H 0.086 0.914
38 H 0.040 0.960
39 H 0.084 0.916
40 H 0.081 0.919
41 H 0.033 0.967
42 H 0.041 0.959
43 H 0.039 0.961
44 H 0.076 0.924
45 H 0.091 0.909
46 H 0.043 0.957
Dipole moment (debyes) X Y Z Total
from point charges -26.894 5.737 13.177 30.493
hybrid contribution 1.053 0.294 -0.064 1.095
sum -25.841 6.031 13.114 29.599
Atomic orbital electron populations
1.22856 0.80355 1.03300 1.00508 1.87972 1.20521 1.28518 1.95463
1.22632 0.93037 0.84711 1.00981 1.22001 0.93691 0.98155 0.93110
1.60332 1.10362 1.56614 1.04533 1.21817 0.87784 0.98857 0.97070
1.21051 0.92940 0.97307 0.97606 0.90621 1.21421 1.01235 0.94476
0.96147 1.21607 0.93004 1.01274 0.99064 1.22235 0.96844 0.88772
1.00315 1.62012 1.12576 1.17025 1.35194 1.21821 0.86051 0.99826
0.96891 1.19580 0.93896 0.95684 0.95106 1.21405 0.92863 1.27554
1.15387 0.95003 1.25994 0.96068 0.98028 0.99043 1.70064 1.11207
1.43825 1.33920 0.85628 0.79278 0.78418 0.79148 1.19102 1.20806
1.17111 1.22116 0.96312 0.99016 0.89328 0.93267 0.93551 0.89407
0.91553 0.92637 0.91150 0.92326 0.83754 0.91627 0.94540 0.90247
0.93290 0.90659 0.91447 0.96043 0.91607 0.91948 0.96669 0.95871
0.96093 0.92408 0.90858 0.95661
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.30 11.01 113.37 1.25 1.55 16
2 O -0.41 -7.32 10.65 -148.98 -1.59 -8.91 16
3 C 0.06 0.81 6.22 71.98 0.45 1.26 16
4 C 0.06 0.84 6.07 86.30 0.52 1.36 16
5 N -0.69 -11.62 5.96 -513.90 -3.06 -14.68 16
6 C 0.07 1.38 5.08 86.30 0.44 1.82 16
7 C -0.07 -1.57 2.49 -10.74 -0.03 -1.59 16
8 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16
9 C -0.10 -2.20 5.14 30.68 0.16 -2.05 16
10 C -0.11 -2.89 6.09 30.65 0.19 -2.70 16
11 C 0.05 1.53 4.85 86.33 0.42 1.94 16
12 N -0.54 -18.92 4.81 -896.37 -4.31 -23.23 16
13 C 0.08 3.44 5.21 86.30 0.45 3.89 16
14 C -0.01 -0.25 3.29 29.85 0.10 -0.15 16
15 C -0.53 -31.72 9.66 25.60 0.25 -31.48 16
16 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16
17 C 0.01 0.34 5.47 84.65 0.46 0.80 16
18 N -0.95 -60.57 13.96 21.45 0.30 -60.28 16
19 Si 0.95 45.36 27.47 68.60 1.88 47.24 16
20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16
21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16
22 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16
23 C 0.06 1.70 4.71 86.32 0.41 2.11 16
24 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16
25 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16
26 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16
27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16
28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16
29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16
30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16
31 H 0.34 5.22 8.73 -89.69 -0.78 4.43 16
32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16
33 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16
34 H 0.08 1.77 7.83 -2.39 -0.02 1.75 16
35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16
36 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16
37 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16
38 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16
39 H 0.07 2.41 5.81 -2.38 -0.01 2.40 16
40 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16
41 H 0.02 0.66 8.08 -2.39 -0.02 0.64 16
42 H 0.02 1.12 5.27 -2.38 -0.01 1.10 16
43 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16
44 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16
45 H 0.07 1.98 8.12 -2.38 -0.02 1.96 16
46 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16
Total: -1.00 -68.32 356.87 -1.64 -69.95
By element:
Atomic # 1 Polarization: 13.06 SS G_CDS: 0.08 Total: 13.14 kcal
Atomic # 6 Polarization: -28.30 SS G_CDS: 5.06 Total: -23.24 kcal
Atomic # 7 Polarization: -91.12 SS G_CDS: -7.07 Total: -98.19 kcal
Atomic # 8 Polarization: -7.32 SS G_CDS: -1.59 Total: -8.91 kcal
Atomic # 14 Polarization: 45.36 SS G_CDS: 1.88 Total: 47.24 kcal
Total: -68.32 -1.64 -69.95 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000104427952.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.567 kcal
(2) G-P(sol) polarization free energy of solvation -68.318 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.885 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.637 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.955 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.522 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds