Wall clock time and date at job start Mon Mar 30 2020 04:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46748 * 2 1 4 4 C 1.42898 * 113.99821 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47177 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.47234 * 64.99900 * 5 4 3 7 7 C 1.46960 * 110.99865 * 66.04856 * 6 5 4 8 8 C 1.53046 * 109.36476 * 183.18721 * 7 6 5 9 9 N 1.46955 * 109.36667 * 301.60071 * 8 7 6 10 10 C 1.46897 * 111.00301 * 183.19023 * 9 8 7 11 11 C 1.53000 * 109.46925 * 293.95332 * 10 9 8 12 12 C 1.50694 * 109.47272 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00090 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00051 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00095 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99907 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47178 * 59.99648 * 16 14 12 18 18 H 1.48501 * 109.47034 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46980 * 299.99736 * 16 14 12 20 20 C 1.46955 * 110.88191 * 59.31518 * 9 8 7 21 21 C 1.46956 * 111.00067 * 189.84516 * 6 5 4 22 22 H 1.09000 * 109.48697 * 296.78569 * 21 6 5 23 23 C 1.52998 * 109.48582 * 56.84411 * 21 6 5 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99993 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99822 * 1 2 3 27 27 H 1.09000 * 109.47050 * 120.00178 * 2 1 3 28 28 H 1.09001 * 109.46801 * 240.00290 * 2 1 3 29 29 H 1.09002 * 109.47367 * 300.00715 * 4 3 2 30 30 H 1.09000 * 109.46841 * 59.99911 * 4 3 2 31 31 H 1.09004 * 109.47021 * 185.00516 * 5 4 3 32 32 H 1.09000 * 109.46558 * 304.99780 * 5 4 3 33 33 H 1.09001 * 109.48553 * 303.15859 * 7 6 5 34 34 H 1.09004 * 109.48978 * 63.19454 * 7 6 5 35 35 H 1.09001 * 109.48626 * 61.56667 * 8 7 6 36 36 H 1.09000 * 109.48712 * 181.62687 * 8 7 6 37 37 H 1.09000 * 109.47141 * 53.94677 * 10 9 8 38 38 H 1.08992 * 109.47234 * 173.95186 * 10 9 8 39 39 H 1.09005 * 109.47139 * 299.99602 * 11 10 9 40 40 H 1.09002 * 109.47169 * 59.99878 * 11 10 9 41 41 H 0.97005 * 120.00145 * 180.02562 * 15 14 12 42 42 H 1.09001 * 109.48472 * 60.65119 * 20 9 8 43 43 H 1.08996 * 109.49136 * 180.69449 * 20 9 8 44 44 H 1.09008 * 109.47100 * 60.00369 * 23 21 6 45 45 H 1.08997 * 109.47079 * 179.97438 * 23 21 6 46 46 H 1.08996 * 109.48023 * 300.00074 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 0.0012 6 7 3.3855 3.5622 1.2564 7 6 4.1144 3.0054 2.4047 8 6 3.5729 3.6219 3.6967 9 7 3.7225 5.0827 3.6396 10 6 3.2829 5.7064 4.8949 11 6 1.7764 5.5012 5.0659 12 6 1.3251 6.1415 6.3532 13 1 2.0413 6.6442 6.9864 14 6 -0.0020 6.0856 6.7228 15 7 -0.8742 5.4740 5.9517 16 14 -0.5612 6.8788 8.3190 17 1 -0.2601 8.3324 8.2815 18 1 -2.0236 6.6808 8.4843 19 1 0.1555 6.2541 9.4598 20 6 2.9938 5.6394 2.4913 21 6 3.5352 5.0230 1.1994 22 1 4.5896 5.2764 1.0894 23 6 2.7511 5.5701 0.0050 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.8333 0.9767 0.8907 30 1 3.8340 0.9766 -0.8892 31 1 4.9082 3.0256 -0.0880 32 1 3.3498 3.4417 -0.8407 33 1 3.9779 1.9244 2.4324 34 1 5.1754 3.2356 2.3083 35 1 2.5185 3.3683 3.8065 36 1 4.1316 3.2320 4.5475 37 1 3.8093 5.2481 5.7321 38 1 3.5034 6.7734 4.8671 39 1 1.2499 5.9594 4.2286 40 1 1.5558 4.4340 5.0936 41 1 -1.8080 5.4350 6.2115 42 1 1.9328 5.4088 2.5875 43 1 3.1299 6.7205 2.4637 44 1 1.6966 5.3172 0.1159 45 1 2.8619 6.6536 -0.0368 46 1 3.1356 5.1295 -0.9149 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000105834999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:53 Heat of formation + Delta-G solvation = -42.634212 kcal Electronic energy + Delta-G solvation = -21985.382423 eV Core-core repulsion = 18909.925690 eV Total energy + Delta-G solvation = -3075.456733 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.43014 -37.85808 -35.78167 -32.92062 -32.43719 -31.45896 -30.06394 -28.30907 -26.85191 -25.61812 -23.65751 -22.77052 -22.01036 -21.71769 -20.28459 -18.81578 -16.72085 -16.50582 -16.33498 -15.39900 -15.29205 -14.74556 -14.53353 -14.44718 -13.89156 -13.68514 -13.54234 -13.02734 -12.76396 -12.63766 -12.39275 -12.14292 -11.75125 -11.66038 -11.53432 -11.47374 -11.34167 -11.14109 -10.97964 -10.84972 -10.73016 -10.64817 -10.24280 -10.05582 -9.82053 -9.63558 -9.51124 -9.08979 -8.30338 -8.05660 -7.41957 -5.96458 -3.99731 3.34994 3.39339 3.41794 3.69907 4.00644 4.46767 4.63200 4.93592 4.98443 5.05136 5.20237 5.25476 5.30162 5.32395 5.35476 5.38348 5.42961 5.51836 5.64851 5.72010 5.73934 5.78368 5.84859 5.90257 5.96387 6.01899 6.13090 6.15599 6.33801 6.35096 6.41384 6.52801 6.61879 6.75170 6.98057 7.18432 7.31025 7.36644 7.61933 7.63388 7.75548 7.91814 8.05255 8.46816 9.07385 9.64059 11.14348 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.004514 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.450652 B = 6201.201338 C = 7059.089053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.368 6.368 4 C 0.067 3.933 5 C 0.052 3.948 6 N -0.523 5.523 7 C 0.060 3.940 8 C 0.055 3.945 9 N -0.545 5.545 10 C 0.058 3.942 11 C -0.008 4.008 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.060 3.940 21 C 0.087 3.913 22 H 0.041 0.959 23 C -0.146 4.146 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.020 0.980 40 H 0.017 0.983 41 H 0.261 0.739 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.920 -8.581 -14.231 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.287 6.287 4 C -0.010 4.010 5 C -0.076 4.076 6 N -0.248 5.248 7 C -0.068 4.068 8 C -0.074 4.074 9 N -0.268 5.268 10 C -0.069 4.069 11 C -0.046 4.046 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.068 4.068 21 C -0.022 4.022 22 H 0.059 0.941 23 C -0.204 4.204 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.618 -8.460 -14.237 18.669 hybrid contribution -0.247 0.096 0.956 0.992 sum 8.371 -8.364 -13.281 17.788 Atomic orbital electron populations 1.21721 0.93782 1.01839 1.03484 1.22414 0.95765 0.84447 0.99336 1.88053 1.20237 1.25241 1.95161 1.22518 0.82354 0.96674 0.99439 1.22194 0.97468 0.93787 0.94193 1.62080 1.56543 1.04359 1.01848 1.22199 0.95203 0.98653 0.90771 1.22074 1.00752 0.88814 0.95726 1.62560 1.55920 1.04117 1.04250 1.22293 0.97747 0.98093 0.88808 1.19646 0.90422 0.97318 0.97202 1.21131 0.93397 1.35425 1.06013 0.92747 1.25016 0.96895 0.95426 0.96958 1.69966 1.02713 1.43094 1.37463 0.86676 0.77477 0.79908 0.84041 1.20246 1.21318 1.20264 1.22133 0.97715 0.98232 0.88745 1.21662 0.97822 0.86871 0.95808 0.94125 1.21880 1.01606 1.00295 0.96579 0.91517 0.91368 0.92044 0.93742 0.94160 0.93380 0.93616 0.93860 0.89440 0.90971 0.94848 0.92888 0.91080 0.92175 0.92076 0.96222 0.96458 0.92983 0.92544 0.91031 0.91418 0.92236 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 37.16 0.38 -1.20 16 2 C 0.06 0.63 6.66 37.16 0.25 0.87 16 3 O -0.37 -5.09 10.29 -35.23 -0.36 -5.46 16 4 C 0.07 0.77 6.00 37.16 0.22 0.99 16 5 C 0.05 0.62 5.11 -3.82 -0.02 0.60 16 6 N -0.52 -7.87 4.48 -226.49 -1.01 -8.88 16 7 C 0.06 0.89 5.41 -3.77 -0.02 0.87 16 8 C 0.05 0.99 5.27 -3.77 -0.02 0.97 16 9 N -0.54 -10.36 4.92 -234.48 -1.15 -11.52 16 10 C 0.06 1.25 5.32 -3.83 -0.02 1.23 16 11 C -0.01 -0.21 4.26 -27.89 -0.12 -0.32 16 12 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 13 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 14 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -27.37 13.29 55.43 0.74 -26.63 16 16 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.06 1.10 4.35 -3.77 -0.02 1.08 16 21 C 0.09 1.31 2.56 -67.66 -0.17 1.14 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 23 C -0.15 -1.91 8.89 37.16 0.33 -1.58 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.54 6.28 -51.93 -0.33 0.21 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.09 1.03 5.74 -51.93 -0.30 0.74 16 33 H 0.07 0.99 6.24 -51.93 -0.32 0.66 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.05 1.12 6.63 -51.93 -0.34 0.77 16 36 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 37 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.02 0.55 6.44 -51.93 -0.33 0.22 16 40 H 0.02 0.49 6.62 -51.93 -0.34 0.15 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.06 1.21 6.45 -51.93 -0.33 0.88 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.61 6.15 -51.93 -0.32 0.29 16 LS Contribution 351.13 15.07 5.29 5.29 Total: -1.00 -31.37 351.13 -9.64 -41.01 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -8.50 Total: -1.71 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 0.38 Total: -9.04 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -1.43 Total: -47.03 kcal Atomic # 8 Polarization: -5.09 SS G_CDS: -0.36 Total: -5.46 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.37 -9.64 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105834999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.627 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds