Wall clock time and date at job start Mon Mar 30 2020 04:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42906 * 109.46748 * 2 1 4 4 C 1.42898 * 113.99821 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47177 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.47234 * 64.99900 * 5 4 3 7 7 C 1.46960 * 110.99865 * 66.04856 * 6 5 4 8 8 C 1.53046 * 109.36476 * 183.18721 * 7 6 5 9 9 N 1.46955 * 109.36667 * 301.60071 * 8 7 6 10 10 C 1.46897 * 111.00301 * 183.19023 * 9 8 7 11 11 C 1.53000 * 109.46925 * 293.95332 * 10 9 8 12 12 C 1.50694 * 109.47272 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00090 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00051 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00095 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99907 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47178 * 59.99648 * 16 14 12 18 18 H 1.48501 * 109.47034 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.46980 * 299.99736 * 16 14 12 20 20 C 1.46955 * 110.88191 * 59.31518 * 9 8 7 21 21 C 1.46956 * 111.00067 * 189.84516 * 6 5 4 22 22 H 1.09000 * 109.48697 * 296.78569 * 21 6 5 23 23 C 1.52998 * 109.48582 * 56.84411 * 21 6 5 24 24 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46955 * 299.99993 * 1 2 3 26 26 H 1.09000 * 109.47050 * 59.99822 * 1 2 3 27 27 H 1.09000 * 109.47050 * 120.00178 * 2 1 3 28 28 H 1.09001 * 109.46801 * 240.00290 * 2 1 3 29 29 H 1.09002 * 109.47367 * 300.00715 * 4 3 2 30 30 H 1.09000 * 109.46841 * 59.99911 * 4 3 2 31 31 H 1.09004 * 109.47021 * 185.00516 * 5 4 3 32 32 H 1.09000 * 109.46558 * 304.99780 * 5 4 3 33 33 H 1.09001 * 109.48553 * 303.15859 * 7 6 5 34 34 H 1.09004 * 109.48978 * 63.19454 * 7 6 5 35 35 H 1.09001 * 109.48626 * 61.56667 * 8 7 6 36 36 H 1.09000 * 109.48712 * 181.62687 * 8 7 6 37 37 H 1.09000 * 109.47141 * 53.94677 * 10 9 8 38 38 H 1.08992 * 109.47234 * 173.95186 * 10 9 8 39 39 H 1.09005 * 109.47139 * 299.99602 * 11 10 9 40 40 H 1.09002 * 109.47169 * 59.99878 * 11 10 9 41 41 H 0.97005 * 120.00145 * 180.02562 * 15 14 12 42 42 H 1.09001 * 109.48472 * 60.65119 * 20 9 8 43 43 H 1.08996 * 109.49136 * 180.69449 * 20 9 8 44 44 H 1.09008 * 109.47100 * 60.00369 * 23 21 6 45 45 H 1.08997 * 109.47079 * 179.97438 * 23 21 6 46 46 H 1.08996 * 109.48023 * 300.00074 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8253 2.9385 0.0012 6 7 3.3855 3.5622 1.2564 7 6 4.1144 3.0054 2.4047 8 6 3.5729 3.6219 3.6967 9 7 3.7225 5.0827 3.6396 10 6 3.2829 5.7064 4.8949 11 6 1.7764 5.5012 5.0659 12 6 1.3251 6.1415 6.3532 13 1 2.0413 6.6442 6.9864 14 6 -0.0020 6.0856 6.7228 15 7 -0.8742 5.4740 5.9517 16 14 -0.5612 6.8788 8.3190 17 1 -0.2601 8.3324 8.2815 18 1 -2.0236 6.6808 8.4843 19 1 0.1555 6.2541 9.4598 20 6 2.9938 5.6394 2.4913 21 6 3.5352 5.0230 1.1994 22 1 4.5896 5.2764 1.0894 23 6 2.7511 5.5701 0.0050 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.8333 0.9767 0.8907 30 1 3.8340 0.9766 -0.8892 31 1 4.9082 3.0256 -0.0880 32 1 3.3498 3.4417 -0.8407 33 1 3.9779 1.9244 2.4324 34 1 5.1754 3.2356 2.3083 35 1 2.5185 3.3683 3.8065 36 1 4.1316 3.2320 4.5475 37 1 3.8093 5.2481 5.7321 38 1 3.5034 6.7734 4.8671 39 1 1.2499 5.9594 4.2286 40 1 1.5558 4.4340 5.0936 41 1 -1.8080 5.4350 6.2115 42 1 1.9328 5.4088 2.5875 43 1 3.1299 6.7205 2.4637 44 1 1.6966 5.3172 0.1159 45 1 2.8619 6.6536 -0.0368 46 1 3.1356 5.1295 -0.9149 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000105834999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:52 Heat of formation + Delta-G solvation = -65.045361 kcal Electronic energy + Delta-G solvation = -21986.354243 eV Core-core repulsion = 18909.925690 eV Total energy + Delta-G solvation = -3076.428553 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.72079 -38.89330 -37.22575 -34.99261 -33.63167 -32.61013 -31.56712 -29.78286 -28.06712 -27.23929 -25.40799 -23.68760 -23.56012 -22.85872 -21.72845 -20.28484 -18.58155 -17.63655 -17.51308 -16.62091 -16.57344 -16.41819 -16.13166 -15.67140 -15.37781 -14.97879 -14.77070 -14.38951 -14.29409 -14.01842 -13.75385 -13.36478 -13.22493 -12.98840 -12.84587 -12.74225 -12.73448 -12.51884 -12.50356 -12.19192 -12.06497 -12.02151 -11.89061 -11.59335 -11.43362 -11.33918 -11.19106 -10.55644 -10.40798 -9.23993 -9.07257 -8.21051 -6.34521 1.37864 1.41579 1.49534 2.38942 2.82144 2.94672 3.08410 3.10894 3.85578 3.97577 4.03182 4.18347 4.22800 4.30983 4.33121 4.37604 4.45853 4.48034 4.50855 4.53756 4.57939 4.62148 4.69331 4.75632 4.79371 4.87077 4.90563 4.95549 4.97723 5.03117 5.05962 5.11379 5.18969 5.27944 5.38220 5.45619 5.55361 5.72300 5.97871 6.10759 6.19032 6.26025 6.33757 6.48317 6.83334 7.35141 8.89865 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.017757 B = 0.004514 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.450652 B = 6201.201338 C = 7059.089053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.402 6.402 4 C 0.064 3.936 5 C 0.053 3.947 6 N -0.548 5.548 7 C 0.070 3.930 8 C 0.055 3.945 9 N -0.533 5.533 10 C 0.071 3.929 11 C 0.006 3.994 12 C -0.544 4.544 13 H 0.063 0.937 14 C 0.000 4.000 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.265 1.265 20 C 0.062 3.938 21 C 0.094 3.906 22 H 0.055 0.945 23 C -0.139 4.139 24 H 0.090 0.910 25 H 0.040 0.960 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.010 0.990 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.066 0.934 39 H -0.010 1.010 40 H -0.015 1.015 41 H 0.263 0.737 42 H 0.012 0.988 43 H 0.075 0.925 44 H 0.042 0.958 45 H 0.071 0.929 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.718 -8.730 -14.770 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.322 6.322 4 C -0.012 4.012 5 C -0.074 4.074 6 N -0.274 5.274 7 C -0.058 4.058 8 C -0.074 4.074 9 N -0.256 5.256 10 C -0.057 4.057 11 C -0.033 4.033 12 C -0.583 4.583 13 H 0.082 0.918 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.791 3.209 17 H -0.190 1.190 18 H -0.209 1.209 19 H -0.190 1.190 20 C -0.067 4.067 21 C -0.014 4.014 22 H 0.073 0.927 23 C -0.197 4.197 24 H 0.109 0.891 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.028 0.972 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.008 0.992 40 H 0.003 0.997 41 H 0.071 0.929 42 H 0.031 0.969 43 H 0.093 0.907 44 H 0.062 0.938 45 H 0.090 0.910 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.440 -8.616 -14.790 20.049 hybrid contribution -0.833 0.099 1.085 1.371 sum 9.607 -8.517 -13.705 18.779 Atomic orbital electron populations 1.21747 0.94018 1.02976 1.02045 1.22559 0.95682 0.83611 1.00504 1.88015 1.21804 1.26940 1.95420 1.22652 0.81355 0.96425 1.00784 1.22287 0.98795 0.93983 0.92379 1.62036 1.57637 1.04378 1.03330 1.22088 0.95654 0.99029 0.89014 1.22125 0.98520 0.88278 0.98450 1.62634 1.54956 1.04714 1.03269 1.22073 0.94248 0.98783 0.90591 1.19463 0.93591 0.94655 0.95554 1.21601 0.94100 1.35669 1.06899 0.91834 1.26020 0.96968 0.95824 1.00946 1.70129 1.03125 1.44467 1.39701 0.85472 0.77005 0.79254 0.79147 1.18962 1.20924 1.18986 1.22156 0.95279 0.98852 0.90395 1.21579 0.98450 0.87124 0.94286 0.92716 1.21837 0.99856 1.01217 0.96771 0.89128 0.94027 0.92185 0.93607 0.91772 0.93322 0.90810 0.91548 0.89211 0.89670 0.93167 0.97150 0.90145 0.91558 0.91539 0.99217 0.99698 0.92853 0.96927 0.90685 0.93830 0.91020 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 10.28 71.98 0.74 -2.40 16 2 C 0.05 1.10 6.66 71.98 0.48 1.58 16 3 O -0.40 -10.82 10.29 -148.98 -1.53 -12.35 16 4 C 0.06 1.32 6.00 71.98 0.43 1.76 16 5 C 0.05 1.14 5.11 86.30 0.44 1.58 16 6 N -0.55 -16.02 4.48 -870.49 -3.90 -19.91 16 7 C 0.07 2.01 5.41 86.31 0.47 2.48 16 8 C 0.05 2.01 5.27 86.31 0.45 2.47 16 9 N -0.53 -20.53 4.92 -895.77 -4.40 -24.93 16 10 C 0.07 3.13 5.32 86.30 0.46 3.59 16 11 C 0.01 0.31 4.26 29.85 0.13 0.44 16 12 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16 13 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 14 C 0.00 0.01 5.46 84.65 0.46 0.48 16 15 N -0.93 -59.21 13.29 21.45 0.28 -58.92 16 16 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 17 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 20 C 0.06 2.32 4.35 86.31 0.38 2.70 16 21 C 0.09 2.76 2.56 44.92 0.12 2.87 16 22 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 23 C -0.14 -3.51 8.89 71.98 0.64 -2.87 16 24 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 0.98 6.28 -2.39 -0.01 0.97 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.16 8.12 -2.39 -0.02 1.14 16 32 H 0.09 1.90 5.74 -2.39 -0.01 1.88 16 33 H 0.09 2.22 6.24 -2.39 -0.01 2.20 16 34 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.01 0.46 6.63 -2.39 -0.02 0.44 16 36 H 0.08 2.74 8.11 -2.39 -0.02 2.72 16 37 H 0.07 2.84 8.10 -2.39 -0.02 2.82 16 38 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 39 H -0.01 -0.64 6.44 -2.38 -0.02 -0.65 16 40 H -0.02 -0.94 6.62 -2.39 -0.02 -0.95 16 41 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 42 H 0.01 0.58 6.45 -2.39 -0.02 0.56 16 43 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.08 1.60 6.15 -2.39 -0.01 1.58 16 Total: -1.00 -70.40 351.13 -1.18 -71.58 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.92 Total: 14.28 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 5.43 Total: -17.11 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -8.01 Total: -103.76 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -1.53 Total: -12.35 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -70.40 -1.18 -71.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000105834999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.538 kcal (2) G-P(sol) polarization free energy of solvation -70.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds