Wall clock time and date at job start Mon Mar 30 2020 05:13:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42894 * 1
3 3 C 1.42902 * 114.00173 * 2 1
4 4 C 1.52994 * 109.47351 * 180.02562 * 3 2 1
5 5 N 1.46901 * 109.47030 * 64.99754 * 4 3 2
6 6 C 1.46903 * 110.99872 * 179.97438 * 5 4 3
7 7 C 1.52997 * 109.46975 * 185.20003 * 6 5 4
8 8 H 1.09001 * 109.46105 * 303.34223 * 7 6 5
9 9 C 1.53035 * 109.46675 * 63.31582 * 7 6 5
10 10 C 1.53120 * 109.28149 * 179.19532 * 9 7 6
11 11 C 1.53122 * 109.16048 * 302.34879 * 10 9 7
12 12 C 1.53032 * 109.27990 * 57.65138 * 11 10 9
13 13 N 1.46849 * 109.46226 * 183.37009 * 7 6 5
14 14 C 1.46900 * 111.00010 * 54.14219 * 13 7 6
15 15 C 1.52999 * 109.47120 * 175.82364 * 14 13 7
16 16 C 1.50697 * 109.47067 * 179.97438 * 15 14 13
17 17 H 1.07995 * 120.00546 * 0.02562 * 16 15 14
18 18 C 1.37884 * 119.99828 * 180.02562 * 16 15 14
19 19 N 1.31512 * 119.99936 * 359.97438 * 18 16 15
20 20 Si 1.86807 * 119.99734 * 180.02562 * 18 16 15
21 21 H 1.48501 * 109.46777 * 179.97438 * 20 18 16
22 22 H 1.48502 * 109.47064 * 299.99222 * 20 18 16
23 23 H 1.48495 * 109.47290 * 59.99730 * 20 18 16
24 24 H 1.09005 * 109.47089 * 179.97438 * 1 2 3
25 25 H 1.09006 * 109.47299 * 299.99520 * 1 2 3
26 26 H 1.08993 * 109.47524 * 59.99630 * 1 2 3
27 27 H 1.09005 * 109.46442 * 60.00001 * 3 2 1
28 28 H 1.08993 * 109.47018 * 300.00670 * 3 2 1
29 29 H 1.09003 * 109.47265 * 305.00144 * 4 3 2
30 30 H 1.09003 * 109.47429 * 185.00110 * 4 3 2
31 31 H 1.00888 * 111.00467 * 303.95728 * 5 4 3
32 32 H 1.08996 * 109.46883 * 65.20066 * 6 5 4
33 33 H 1.08996 * 109.47477 * 305.19931 * 6 5 4
34 34 H 1.08999 * 109.50255 * 299.13782 * 9 7 6
35 35 H 1.08998 * 109.50310 * 59.21351 * 9 7 6
36 36 H 1.09002 * 109.52188 * 62.24720 * 10 9 7
37 37 H 1.08998 * 109.52198 * 182.43761 * 10 9 7
38 38 H 1.08997 * 109.50463 * 177.59695 * 11 10 9
39 39 H 1.09005 * 109.49992 * 297.67138 * 11 10 9
40 40 H 1.09003 * 109.45946 * 180.80630 * 12 11 10
41 41 H 1.09002 * 109.46498 * 60.83754 * 12 11 10
42 42 H 1.09003 * 109.47099 * 55.82748 * 14 13 7
43 43 H 1.08996 * 109.47374 * 295.82446 * 14 13 7
44 44 H 1.09006 * 109.47301 * 60.00027 * 15 14 13
45 45 H 1.09002 * 109.47471 * 300.00321 * 15 14 13
46 46 H 0.96993 * 120.00549 * 0.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 -0.0006
5 7 3.9768 0.5627 -1.2562
6 6 5.4394 0.4308 -1.2925
7 6 5.8698 -0.0989 -2.6619
8 1 5.3662 -1.0451 -2.8599
9 6 5.4915 0.9159 -3.7431
10 6 5.9420 0.3909 -5.1091
11 6 7.4516 0.1365 -5.0769
12 6 7.7730 -0.8557 -3.9570
13 7 7.3234 -0.3070 -2.6712
14 6 7.7389 -1.1692 -1.5568
15 6 9.2398 -1.4476 -1.6595
16 6 9.6662 -2.3316 -0.5159
17 1 8.9393 -2.6622 0.2112
18 6 10.9844 -2.7183 -0.3978
19 7 11.8695 -2.3161 -1.2835
20 14 11.5127 -3.8147 1.0194
21 1 12.9696 -4.0847 0.9197
22 1 11.2220 -3.1341 2.3068
23 1 10.7667 -5.0972 0.9578
24 1 -0.3633 -1.0277 -0.0005
25 1 -0.3634 0.5138 0.8901
26 1 -0.3634 0.5138 -0.8899
27 1 1.6885 1.8463 0.8901
28 1 1.6885 1.8464 -0.8899
29 1 3.8514 0.5682 0.8409
30 1 3.9785 2.1765 0.0889
31 1 3.5293 -0.3310 -1.3939
32 1 5.7609 -0.2640 -0.5168
33 1 5.8965 1.4051 -1.1198
34 1 4.4109 1.0585 -3.7463
35 1 5.9833 1.8667 -3.5378
36 1 5.4205 -0.5401 -5.3316
37 1 5.7134 1.1300 -5.8769
38 1 7.7714 -0.2777 -6.0330
39 1 7.9749 1.0750 -4.8936
40 1 8.8488 -1.0279 -3.9221
41 1 7.2604 -1.7984 -4.1488
42 1 7.1909 -2.1105 -1.6017
43 1 7.5259 -0.6696 -0.6118
44 1 9.7879 -0.5064 -1.6145
45 1 9.4529 -1.9473 -2.6045
46 1 11.5951 -1.7472 -2.0196
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000111705445.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:13:21
Heat of formation + Delta-G solvation = -61.950927 kcal
Electronic energy + Delta-G solvation = -21480.088645 eV
Core-core repulsion = 18403.794277 eV
Total energy + Delta-G solvation = -3076.294368 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-39.18527 -38.24329 -35.72339 -34.34348 -32.63794 -31.63560 -28.98823 -28.76103
-26.52586 -24.97279 -24.48216 -23.10868 -22.00675 -20.95172 -20.33382 -19.29037
-16.84578 -16.79341 -16.30364 -15.91196 -15.29793 -14.98931 -14.94404 -14.20965
-13.92258 -13.86654 -13.66760 -13.26832 -13.05647 -12.89902 -12.66185 -12.28374
-11.94093 -11.81814 -11.67728 -11.62090 -11.27197 -11.22055 -10.86284 -10.70468
-10.53903 -10.36632 -10.12046 -10.03252 -9.93035 -9.84473 -9.41999 -8.55075
-8.37206 -8.28086 -7.70953 -6.33692 -4.02121 3.45195 3.47339 3.55028
3.66032 3.96976 4.52409 4.64873 4.82719 4.99614 5.01720 5.08101
5.09382 5.13995 5.19510 5.24754 5.37142 5.39166 5.43985 5.48040
5.63634 5.65297 5.68812 5.80810 5.89839 6.02807 6.08424 6.12340
6.15192 6.24043 6.30598 6.40686 6.43449 6.56590 6.67388 6.84383
6.86792 6.98501 7.34136 7.38621 7.49817 7.72648 7.79703 8.27280
8.48895 8.91567 9.69826 11.07416
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.014758 B = 0.004262 C = 0.003438
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1896.804348 B = 6568.452393 C = 8142.289680
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.393 6.393
3 C 0.062 3.938
4 C 0.062 3.938
5 N -0.686 5.686
6 C 0.062 3.938
7 C 0.091 3.909
8 H 0.031 0.969
9 C -0.098 4.098
10 C -0.121 4.121
11 C -0.117 4.117
12 C 0.055 3.945
13 N -0.535 5.535
14 C 0.068 3.932
15 C 0.011 3.989
16 C -0.603 4.603
17 H 0.046 0.954
18 C 0.016 3.984
19 N -0.912 5.912
20 Si 1.068 2.932
21 H -0.282 1.282
22 H -0.288 1.288
23 H -0.289 1.289
24 H 0.084 0.916
25 H 0.039 0.961
26 H 0.041 0.959
27 H 0.051 0.949
28 H 0.058 0.942
29 H 0.038 0.962
30 H 0.086 0.914
31 H 0.346 0.654
32 H 0.038 0.962
33 H 0.078 0.922
34 H 0.071 0.929
35 H 0.064 0.936
36 H 0.053 0.947
37 H 0.057 0.943
38 H 0.059 0.941
39 H 0.068 0.932
40 H 0.087 0.913
41 H 0.024 0.976
42 H 0.017 0.983
43 H 0.065 0.935
44 H 0.015 0.985
45 H 0.010 0.990
46 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.161 7.733 -2.209 21.706
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 O -0.312 6.312
3 C -0.015 4.015
4 C -0.068 4.068
5 N -0.318 5.318
6 C -0.068 4.068
7 C -0.018 4.018
8 H 0.049 0.951
9 C -0.136 4.136
10 C -0.159 4.159
11 C -0.154 4.154
12 C -0.073 4.073
13 N -0.260 5.260
14 C -0.059 4.059
15 C -0.026 4.026
16 C -0.641 4.641
17 H 0.065 0.935
18 C -0.188 4.188
19 N -0.549 5.549
20 Si 0.897 3.103
21 H -0.207 1.207
22 H -0.215 1.215
23 H -0.215 1.215
24 H 0.102 0.898
25 H 0.057 0.943
26 H 0.059 0.941
27 H 0.070 0.930
28 H 0.077 0.923
29 H 0.056 0.944
30 H 0.104 0.896
31 H 0.163 0.837
32 H 0.056 0.944
33 H 0.097 0.903
34 H 0.090 0.910
35 H 0.083 0.917
36 H 0.072 0.928
37 H 0.076 0.924
38 H 0.078 0.922
39 H 0.087 0.913
40 H 0.105 0.895
41 H 0.042 0.958
42 H 0.036 0.964
43 H 0.083 0.917
44 H 0.034 0.966
45 H 0.028 0.972
46 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -18.518 7.852 -1.817 20.196
hybrid contribution -1.850 -0.562 -0.072 1.935
sum -20.368 7.289 -1.889 21.715
Atomic orbital electron populations
1.22705 0.81084 1.02676 0.99810 1.87869 1.19701 1.28223 1.95398
1.22636 0.93672 0.84772 1.00388 1.21946 0.92809 1.00455 0.91583
1.60411 1.06980 1.30066 1.34330 1.22053 0.86827 1.01436 0.96443
1.21478 0.88625 0.97082 0.94605 0.95137 1.21485 1.00749 0.98417
0.92971 1.21608 0.96323 1.00452 0.97514 1.21609 0.95948 1.00243
0.97641 1.22122 1.01720 0.94853 0.88636 1.62014 1.10927 1.49553
1.03546 1.22203 0.98928 0.92596 0.92164 1.19318 0.89838 0.96475
0.96999 1.22009 0.96570 1.33618 1.11950 0.93533 1.25821 0.93036
0.98364 1.01591 1.70768 1.36616 1.33718 1.13765 0.83554 0.76187
0.75715 0.74865 1.20744 1.21452 1.21532 0.89752 0.94286 0.94059
0.93049 0.92326 0.94383 0.89589 0.83653 0.94398 0.90328 0.91032
0.91721 0.92797 0.92409 0.92197 0.91332 0.89492 0.95774 0.96441
0.91676 0.96629 0.97172 0.92043
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.26 11.01 101.05 1.11 1.37 16
2 O -0.39 -4.25 10.22 -35.23 -0.36 -4.61 16
3 C 0.06 0.58 6.28 37.15 0.23 0.81 16
4 C 0.06 0.66 6.10 -3.83 -0.02 0.64 16
5 N -0.69 -8.51 5.87 -113.78 -0.67 -9.18 16
6 C 0.06 0.90 4.78 -3.82 -0.02 0.88 16
7 C 0.09 1.43 2.11 -67.72 -0.14 1.28 16
8 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16
9 C -0.10 -1.34 5.23 -26.65 -0.14 -1.48 16
10 C -0.12 -1.57 6.00 -26.61 -0.16 -1.73 16
11 C -0.12 -1.69 6.09 -26.65 -0.16 -1.85 16
12 C 0.05 0.98 5.03 -3.83 -0.02 0.96 16
13 N -0.53 -9.98 4.60 -226.69 -1.04 -11.02 16
14 C 0.07 1.48 4.38 -3.82 -0.02 1.47 16
15 C 0.01 0.29 3.78 -27.89 -0.11 0.18 16
16 C -0.60 -17.56 9.11 -34.44 -0.31 -17.87 16
17 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16
18 C 0.02 0.46 5.46 -17.82 -0.10 0.37 16
19 N -0.91 -28.40 13.65 55.43 0.76 -27.65 16
20 Si 1.07 25.74 29.90 -169.99 -5.08 20.66 16
21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
22 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16
23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16
24 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16
25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16
26 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16
27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16
28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
29 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16
30 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16
31 H 0.35 4.44 8.35 -39.30 -0.33 4.11 16
32 H 0.04 0.62 6.22 -51.93 -0.32 0.29 16
33 H 0.08 1.18 8.13 -51.93 -0.42 0.76 16
34 H 0.07 0.92 7.73 -51.93 -0.40 0.52 16
35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
40 H 0.09 1.74 5.84 -51.93 -0.30 1.44 16
41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16
42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16
43 H 0.06 1.42 6.40 -51.93 -0.33 1.09 16
44 H 0.02 0.43 8.01 -51.93 -0.42 0.02 16
45 H 0.01 0.28 6.06 -51.93 -0.31 -0.04 16
46 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16
LS Contribution 354.73 15.07 5.35 5.35
Total: -1.00 -31.16 354.73 -9.58 -40.74
By element:
Atomic # 1 Polarization: 9.38 SS G_CDS: -8.68 Total: 0.70 kcal
Atomic # 6 Polarization: -15.13 SS G_CDS: 0.15 Total: -14.98 kcal
Atomic # 7 Polarization: -46.90 SS G_CDS: -0.95 Total: -47.85 kcal
Atomic # 8 Polarization: -4.25 SS G_CDS: -0.36 Total: -4.61 kcal
Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.66 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -31.16 -9.58 -40.74 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000111705445.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.210 kcal
(2) G-P(sol) polarization free energy of solvation -31.159 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.369 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.951 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds