Wall clock time and date at job start Mon Mar 30 2020 05:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00173 * 2 1 4 4 C 1.52994 * 109.47351 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47030 * 64.99754 * 4 3 2 6 6 C 1.46903 * 110.99872 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.46975 * 185.20003 * 6 5 4 8 8 H 1.09001 * 109.46105 * 303.34223 * 7 6 5 9 9 C 1.53035 * 109.46675 * 63.31582 * 7 6 5 10 10 C 1.53120 * 109.28149 * 179.19532 * 9 7 6 11 11 C 1.53122 * 109.16048 * 302.34879 * 10 9 7 12 12 C 1.53032 * 109.27990 * 57.65138 * 11 10 9 13 13 N 1.46849 * 109.46226 * 183.37009 * 7 6 5 14 14 C 1.46900 * 111.00010 * 54.14219 * 13 7 6 15 15 C 1.52999 * 109.47120 * 175.82364 * 14 13 7 16 16 C 1.50697 * 109.47067 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00546 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99828 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99936 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46777 * 179.97438 * 20 18 16 22 22 H 1.48502 * 109.47064 * 299.99222 * 20 18 16 23 23 H 1.48495 * 109.47290 * 59.99730 * 20 18 16 24 24 H 1.09005 * 109.47089 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47299 * 299.99520 * 1 2 3 26 26 H 1.08993 * 109.47524 * 59.99630 * 1 2 3 27 27 H 1.09005 * 109.46442 * 60.00001 * 3 2 1 28 28 H 1.08993 * 109.47018 * 300.00670 * 3 2 1 29 29 H 1.09003 * 109.47265 * 305.00144 * 4 3 2 30 30 H 1.09003 * 109.47429 * 185.00110 * 4 3 2 31 31 H 1.00888 * 111.00467 * 303.95728 * 5 4 3 32 32 H 1.08996 * 109.46883 * 65.20066 * 6 5 4 33 33 H 1.08996 * 109.47477 * 305.19931 * 6 5 4 34 34 H 1.08999 * 109.50255 * 299.13782 * 9 7 6 35 35 H 1.08998 * 109.50310 * 59.21351 * 9 7 6 36 36 H 1.09002 * 109.52188 * 62.24720 * 10 9 7 37 37 H 1.08998 * 109.52198 * 182.43761 * 10 9 7 38 38 H 1.08997 * 109.50463 * 177.59695 * 11 10 9 39 39 H 1.09005 * 109.49992 * 297.67138 * 11 10 9 40 40 H 1.09003 * 109.45946 * 180.80630 * 12 11 10 41 41 H 1.09002 * 109.46498 * 60.83754 * 12 11 10 42 42 H 1.09003 * 109.47099 * 55.82748 * 14 13 7 43 43 H 1.08996 * 109.47374 * 295.82446 * 14 13 7 44 44 H 1.09006 * 109.47301 * 60.00027 * 15 14 13 45 45 H 1.09002 * 109.47471 * 300.00321 * 15 14 13 46 46 H 0.96993 * 120.00549 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9768 0.5627 -1.2562 6 6 5.4394 0.4308 -1.2925 7 6 5.8698 -0.0989 -2.6619 8 1 5.3662 -1.0451 -2.8599 9 6 5.4915 0.9159 -3.7431 10 6 5.9420 0.3909 -5.1091 11 6 7.4516 0.1365 -5.0769 12 6 7.7730 -0.8557 -3.9570 13 7 7.3234 -0.3070 -2.6712 14 6 7.7389 -1.1692 -1.5568 15 6 9.2398 -1.4476 -1.6595 16 6 9.6662 -2.3316 -0.5159 17 1 8.9393 -2.6622 0.2112 18 6 10.9844 -2.7183 -0.3978 19 7 11.8695 -2.3161 -1.2835 20 14 11.5127 -3.8147 1.0194 21 1 12.9696 -4.0847 0.9197 22 1 11.2220 -3.1341 2.3068 23 1 10.7667 -5.0972 0.9578 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.6885 1.8463 0.8901 28 1 1.6885 1.8464 -0.8899 29 1 3.8514 0.5682 0.8409 30 1 3.9785 2.1765 0.0889 31 1 3.5293 -0.3310 -1.3939 32 1 5.7609 -0.2640 -0.5168 33 1 5.8965 1.4051 -1.1198 34 1 4.4109 1.0585 -3.7463 35 1 5.9833 1.8667 -3.5378 36 1 5.4205 -0.5401 -5.3316 37 1 5.7134 1.1300 -5.8769 38 1 7.7714 -0.2777 -6.0330 39 1 7.9749 1.0750 -4.8936 40 1 8.8488 -1.0279 -3.9221 41 1 7.2604 -1.7984 -4.1488 42 1 7.1909 -2.1105 -1.6017 43 1 7.5259 -0.6696 -0.6118 44 1 9.7879 -0.5064 -1.6145 45 1 9.4529 -1.9473 -2.6045 46 1 11.5951 -1.7472 -2.0196 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111705445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:21 Heat of formation + Delta-G solvation = -61.950927 kcal Electronic energy + Delta-G solvation = -21480.088645 eV Core-core repulsion = 18403.794277 eV Total energy + Delta-G solvation = -3076.294368 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.18527 -38.24329 -35.72339 -34.34348 -32.63794 -31.63560 -28.98823 -28.76103 -26.52586 -24.97279 -24.48216 -23.10868 -22.00675 -20.95172 -20.33382 -19.29037 -16.84578 -16.79341 -16.30364 -15.91196 -15.29793 -14.98931 -14.94404 -14.20965 -13.92258 -13.86654 -13.66760 -13.26832 -13.05647 -12.89902 -12.66185 -12.28374 -11.94093 -11.81814 -11.67728 -11.62090 -11.27197 -11.22055 -10.86284 -10.70468 -10.53903 -10.36632 -10.12046 -10.03252 -9.93035 -9.84473 -9.41999 -8.55075 -8.37206 -8.28086 -7.70953 -6.33692 -4.02121 3.45195 3.47339 3.55028 3.66032 3.96976 4.52409 4.64873 4.82719 4.99614 5.01720 5.08101 5.09382 5.13995 5.19510 5.24754 5.37142 5.39166 5.43985 5.48040 5.63634 5.65297 5.68812 5.80810 5.89839 6.02807 6.08424 6.12340 6.15192 6.24043 6.30598 6.40686 6.43449 6.56590 6.67388 6.84383 6.86792 6.98501 7.34136 7.38621 7.49817 7.72648 7.79703 8.27280 8.48895 8.91567 9.69826 11.07416 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.004262 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.804348 B = 6568.452393 C = 8142.289680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.062 3.938 4 C 0.062 3.938 5 N -0.686 5.686 6 C 0.062 3.938 7 C 0.091 3.909 8 H 0.031 0.969 9 C -0.098 4.098 10 C -0.121 4.121 11 C -0.117 4.117 12 C 0.055 3.945 13 N -0.535 5.535 14 C 0.068 3.932 15 C 0.011 3.989 16 C -0.603 4.603 17 H 0.046 0.954 18 C 0.016 3.984 19 N -0.912 5.912 20 Si 1.068 2.932 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.289 1.289 24 H 0.084 0.916 25 H 0.039 0.961 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.038 0.962 30 H 0.086 0.914 31 H 0.346 0.654 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.024 0.976 42 H 0.017 0.983 43 H 0.065 0.935 44 H 0.015 0.985 45 H 0.010 0.990 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.161 7.733 -2.209 21.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C -0.015 4.015 4 C -0.068 4.068 5 N -0.318 5.318 6 C -0.068 4.068 7 C -0.018 4.018 8 H 0.049 0.951 9 C -0.136 4.136 10 C -0.159 4.159 11 C -0.154 4.154 12 C -0.073 4.073 13 N -0.260 5.260 14 C -0.059 4.059 15 C -0.026 4.026 16 C -0.641 4.641 17 H 0.065 0.935 18 C -0.188 4.188 19 N -0.549 5.549 20 Si 0.897 3.103 21 H -0.207 1.207 22 H -0.215 1.215 23 H -0.215 1.215 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.163 0.837 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.042 0.958 42 H 0.036 0.964 43 H 0.083 0.917 44 H 0.034 0.966 45 H 0.028 0.972 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.518 7.852 -1.817 20.196 hybrid contribution -1.850 -0.562 -0.072 1.935 sum -20.368 7.289 -1.889 21.715 Atomic orbital electron populations 1.22705 0.81084 1.02676 0.99810 1.87869 1.19701 1.28223 1.95398 1.22636 0.93672 0.84772 1.00388 1.21946 0.92809 1.00455 0.91583 1.60411 1.06980 1.30066 1.34330 1.22053 0.86827 1.01436 0.96443 1.21478 0.88625 0.97082 0.94605 0.95137 1.21485 1.00749 0.98417 0.92971 1.21608 0.96323 1.00452 0.97514 1.21609 0.95948 1.00243 0.97641 1.22122 1.01720 0.94853 0.88636 1.62014 1.10927 1.49553 1.03546 1.22203 0.98928 0.92596 0.92164 1.19318 0.89838 0.96475 0.96999 1.22009 0.96570 1.33618 1.11950 0.93533 1.25821 0.93036 0.98364 1.01591 1.70768 1.36616 1.33718 1.13765 0.83554 0.76187 0.75715 0.74865 1.20744 1.21452 1.21532 0.89752 0.94286 0.94059 0.93049 0.92326 0.94383 0.89589 0.83653 0.94398 0.90328 0.91032 0.91721 0.92797 0.92409 0.92197 0.91332 0.89492 0.95774 0.96441 0.91676 0.96629 0.97172 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.25 10.22 -35.23 -0.36 -4.61 16 3 C 0.06 0.58 6.28 37.15 0.23 0.81 16 4 C 0.06 0.66 6.10 -3.83 -0.02 0.64 16 5 N -0.69 -8.51 5.87 -113.78 -0.67 -9.18 16 6 C 0.06 0.90 4.78 -3.82 -0.02 0.88 16 7 C 0.09 1.43 2.11 -67.72 -0.14 1.28 16 8 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 9 C -0.10 -1.34 5.23 -26.65 -0.14 -1.48 16 10 C -0.12 -1.57 6.00 -26.61 -0.16 -1.73 16 11 C -0.12 -1.69 6.09 -26.65 -0.16 -1.85 16 12 C 0.05 0.98 5.03 -3.83 -0.02 0.96 16 13 N -0.53 -9.98 4.60 -226.69 -1.04 -11.02 16 14 C 0.07 1.48 4.38 -3.82 -0.02 1.47 16 15 C 0.01 0.29 3.78 -27.89 -0.11 0.18 16 16 C -0.60 -17.56 9.11 -34.44 -0.31 -17.87 16 17 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16 18 C 0.02 0.46 5.46 -17.82 -0.10 0.37 16 19 N -0.91 -28.40 13.65 55.43 0.76 -27.65 16 20 Si 1.07 25.74 29.90 -169.99 -5.08 20.66 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.35 4.44 8.35 -39.30 -0.33 4.11 16 32 H 0.04 0.62 6.22 -51.93 -0.32 0.29 16 33 H 0.08 1.18 8.13 -51.93 -0.42 0.76 16 34 H 0.07 0.92 7.73 -51.93 -0.40 0.52 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.09 1.74 5.84 -51.93 -0.30 1.44 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 1.42 6.40 -51.93 -0.33 1.09 16 44 H 0.02 0.43 8.01 -51.93 -0.42 0.02 16 45 H 0.01 0.28 6.06 -51.93 -0.31 -0.04 16 46 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -31.16 354.73 -9.58 -40.74 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.68 Total: 0.70 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 0.15 Total: -14.98 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -0.95 Total: -47.85 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.36 Total: -4.61 kcal Atomic # 14 Polarization: 25.74 SS G_CDS: -5.08 Total: 20.66 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.16 -9.58 -40.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111705445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.210 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds