Wall clock time and date at job start Mon Mar 30 2020 05:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 114.00173 * 2 1 4 4 C 1.52994 * 109.47351 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47030 * 64.99754 * 4 3 2 6 6 C 1.46903 * 110.99872 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.46975 * 185.20003 * 6 5 4 8 8 H 1.09001 * 109.46105 * 303.34223 * 7 6 5 9 9 C 1.53035 * 109.46675 * 63.31582 * 7 6 5 10 10 C 1.53120 * 109.28149 * 179.19532 * 9 7 6 11 11 C 1.53122 * 109.16048 * 302.34879 * 10 9 7 12 12 C 1.53032 * 109.27990 * 57.65138 * 11 10 9 13 13 N 1.46849 * 109.46226 * 183.37009 * 7 6 5 14 14 C 1.46900 * 111.00010 * 54.14219 * 13 7 6 15 15 C 1.52999 * 109.47120 * 175.82364 * 14 13 7 16 16 C 1.50697 * 109.47067 * 179.97438 * 15 14 13 17 17 H 1.07995 * 120.00546 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99828 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99936 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46777 * 179.97438 * 20 18 16 22 22 H 1.48502 * 109.47064 * 299.99222 * 20 18 16 23 23 H 1.48495 * 109.47290 * 59.99730 * 20 18 16 24 24 H 1.09005 * 109.47089 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47299 * 299.99520 * 1 2 3 26 26 H 1.08993 * 109.47524 * 59.99630 * 1 2 3 27 27 H 1.09005 * 109.46442 * 60.00001 * 3 2 1 28 28 H 1.08993 * 109.47018 * 300.00670 * 3 2 1 29 29 H 1.09003 * 109.47265 * 305.00144 * 4 3 2 30 30 H 1.09003 * 109.47429 * 185.00110 * 4 3 2 31 31 H 1.00888 * 111.00467 * 303.95728 * 5 4 3 32 32 H 1.08996 * 109.46883 * 65.20066 * 6 5 4 33 33 H 1.08996 * 109.47477 * 305.19931 * 6 5 4 34 34 H 1.08999 * 109.50255 * 299.13782 * 9 7 6 35 35 H 1.08998 * 109.50310 * 59.21351 * 9 7 6 36 36 H 1.09002 * 109.52188 * 62.24720 * 10 9 7 37 37 H 1.08998 * 109.52198 * 182.43761 * 10 9 7 38 38 H 1.08997 * 109.50463 * 177.59695 * 11 10 9 39 39 H 1.09005 * 109.49992 * 297.67138 * 11 10 9 40 40 H 1.09003 * 109.45946 * 180.80630 * 12 11 10 41 41 H 1.09002 * 109.46498 * 60.83754 * 12 11 10 42 42 H 1.09003 * 109.47099 * 55.82748 * 14 13 7 43 43 H 1.08996 * 109.47374 * 295.82446 * 14 13 7 44 44 H 1.09006 * 109.47301 * 60.00027 * 15 14 13 45 45 H 1.09002 * 109.47471 * 300.00321 * 15 14 13 46 46 H 0.96993 * 120.00549 * 0.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9768 0.5627 -1.2562 6 6 5.4394 0.4308 -1.2925 7 6 5.8698 -0.0989 -2.6619 8 1 5.3662 -1.0451 -2.8599 9 6 5.4915 0.9159 -3.7431 10 6 5.9420 0.3909 -5.1091 11 6 7.4516 0.1365 -5.0769 12 6 7.7730 -0.8557 -3.9570 13 7 7.3234 -0.3070 -2.6712 14 6 7.7389 -1.1692 -1.5568 15 6 9.2398 -1.4476 -1.6595 16 6 9.6662 -2.3316 -0.5159 17 1 8.9393 -2.6622 0.2112 18 6 10.9844 -2.7183 -0.3978 19 7 11.8695 -2.3161 -1.2835 20 14 11.5127 -3.8147 1.0194 21 1 12.9696 -4.0847 0.9197 22 1 11.2220 -3.1341 2.3068 23 1 10.7667 -5.0972 0.9578 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 1.6885 1.8463 0.8901 28 1 1.6885 1.8464 -0.8899 29 1 3.8514 0.5682 0.8409 30 1 3.9785 2.1765 0.0889 31 1 3.5293 -0.3310 -1.3939 32 1 5.7609 -0.2640 -0.5168 33 1 5.8965 1.4051 -1.1198 34 1 4.4109 1.0585 -3.7463 35 1 5.9833 1.8667 -3.5378 36 1 5.4205 -0.5401 -5.3316 37 1 5.7134 1.1300 -5.8769 38 1 7.7714 -0.2777 -6.0330 39 1 7.9749 1.0750 -4.8936 40 1 8.8488 -1.0279 -3.9221 41 1 7.2604 -1.7984 -4.1488 42 1 7.1909 -2.1105 -1.6017 43 1 7.5259 -0.6696 -0.6118 44 1 9.7879 -0.5064 -1.6145 45 1 9.4529 -1.9473 -2.6045 46 1 11.5951 -1.7472 -2.0196 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111705445.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:21 Heat of formation + Delta-G solvation = -83.800565 kcal Electronic energy + Delta-G solvation = -21481.036117 eV Core-core repulsion = 18403.794277 eV Total energy + Delta-G solvation = -3077.241840 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.54286 -39.02584 -36.81331 -36.15331 -34.42049 -32.82120 -30.64545 -29.94327 -27.24171 -26.56653 -25.78827 -24.92955 -22.86939 -22.36073 -21.91867 -20.61358 -18.96307 -17.59966 -17.25835 -16.98943 -16.56053 -16.16918 -15.93044 -15.71623 -15.62597 -15.14871 -15.04008 -14.72194 -14.52474 -14.23663 -13.86925 -13.62245 -13.29930 -13.15939 -12.84069 -12.77945 -12.66067 -12.41707 -12.14407 -12.10201 -12.03897 -11.93015 -11.85867 -11.55373 -11.13510 -11.05006 -10.73849 -10.61353 -10.54430 -9.45924 -9.25961 -8.72282 -6.42430 1.50269 1.59116 1.78779 2.53328 2.75634 2.89272 3.13260 3.34114 3.79605 3.88281 3.94575 4.08774 4.13623 4.26686 4.31170 4.34237 4.38329 4.43120 4.49782 4.53572 4.54235 4.59063 4.61378 4.75663 4.82221 4.86338 4.87687 4.88784 4.91458 4.94708 5.06988 5.11041 5.22626 5.26242 5.33700 5.39614 5.51919 5.83600 5.93053 6.13368 6.18413 6.23838 6.25656 6.37046 6.55524 7.39626 8.68868 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.004262 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.804348 B = 6568.452393 C = 8142.289680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.421 6.421 3 C 0.066 3.934 4 C 0.059 3.941 5 N -0.677 5.677 6 C 0.071 3.929 7 C 0.091 3.909 8 H 0.025 0.975 9 C -0.090 4.090 10 C -0.117 4.117 11 C -0.110 4.110 12 C 0.053 3.947 13 N -0.539 5.539 14 C 0.086 3.914 15 C 0.019 3.981 16 C -0.623 4.623 17 H 0.048 0.952 18 C -0.037 4.037 19 N -0.935 5.935 20 Si 1.119 2.881 21 H -0.281 1.281 22 H -0.268 1.268 23 H -0.269 1.269 24 H 0.090 0.910 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.025 0.975 30 H 0.097 0.903 31 H 0.344 0.656 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.020 0.980 42 H 0.009 0.991 43 H 0.064 0.936 44 H -0.010 1.010 45 H -0.004 1.004 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.108 8.226 -2.101 23.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.340 6.340 3 C -0.010 4.010 4 C -0.070 4.070 5 N -0.308 5.308 6 C -0.058 4.058 7 C -0.017 4.017 8 H 0.043 0.957 9 C -0.127 4.127 10 C -0.154 4.154 11 C -0.148 4.148 12 C -0.075 4.075 13 N -0.265 5.265 14 C -0.042 4.042 15 C -0.019 4.019 16 C -0.661 4.661 17 H 0.066 0.934 18 C -0.234 4.234 19 N -0.572 5.572 20 Si 0.939 3.061 21 H -0.206 1.206 22 H -0.193 1.193 23 H -0.195 1.195 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.115 0.885 31 H 0.162 0.838 32 H 0.034 0.966 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.027 0.973 43 H 0.082 0.918 44 H 0.008 0.992 45 H 0.014 0.986 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.505 8.368 -1.725 22.214 hybrid contribution -1.290 -0.691 -0.131 1.470 sum -21.795 7.677 -1.856 23.182 Atomic orbital electron populations 1.22865 0.79521 1.03489 1.00848 1.87828 1.21517 1.29071 1.95622 1.22623 0.92254 0.84578 1.01573 1.22057 0.94298 1.00478 0.90196 1.60431 1.05210 1.29852 1.35326 1.21876 0.88389 1.00467 0.95115 1.21591 0.86242 0.97656 0.96244 0.95718 1.21439 1.01598 0.97277 0.92435 1.21602 0.94616 1.01437 0.97751 1.21579 0.97522 0.98922 0.96754 1.22125 0.99723 0.96031 0.89598 1.62002 1.13328 1.48287 1.02859 1.21842 0.95777 0.92844 0.93708 1.19169 0.92576 0.94555 0.95562 1.22437 0.97037 1.33963 1.12661 0.93395 1.27467 0.93412 0.99142 1.03400 1.70904 1.37184 1.34724 1.14350 0.82929 0.76023 0.74787 0.72349 1.20619 1.19324 1.19469 0.89174 0.93085 0.93138 0.91230 0.91668 0.95666 0.88521 0.83845 0.96649 0.90598 0.89456 0.92042 0.92391 0.89751 0.90424 0.91705 0.92621 0.96213 0.97308 0.91760 0.99161 0.98631 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -8.47 10.22 -148.98 -1.52 -9.99 16 3 C 0.07 1.11 6.28 71.98 0.45 1.56 16 4 C 0.06 1.20 6.10 86.30 0.53 1.72 16 5 N -0.68 -16.00 5.87 -513.90 -3.02 -19.02 16 6 C 0.07 2.06 4.78 86.30 0.41 2.47 16 7 C 0.09 2.80 2.11 44.94 0.09 2.89 16 8 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 9 C -0.09 -2.25 5.23 30.65 0.16 -2.09 16 10 C -0.12 -2.71 6.00 30.68 0.18 -2.53 16 11 C -0.11 -3.06 6.09 30.65 0.19 -2.87 16 12 C 0.05 1.94 5.03 86.32 0.43 2.37 16 13 N -0.54 -20.46 4.60 -871.11 -4.01 -24.47 16 14 C 0.09 3.88 4.38 86.30 0.38 4.26 16 15 C 0.02 1.02 3.78 29.85 0.11 1.13 16 16 C -0.62 -37.10 9.11 25.60 0.23 -36.86 16 17 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 18 C -0.04 -2.19 5.46 84.66 0.46 -1.73 16 19 N -0.93 -59.57 13.65 21.45 0.29 -59.28 16 20 Si 1.12 51.49 29.90 68.60 2.05 53.55 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 24 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.34 8.48 8.35 -89.70 -0.75 7.73 16 32 H 0.02 0.51 6.22 -2.39 -0.01 0.50 16 33 H 0.08 2.24 8.13 -2.39 -0.02 2.22 16 34 H 0.09 1.97 7.73 -2.39 -0.02 1.95 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.06 2.35 5.84 -2.39 -0.01 2.34 16 41 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.06 2.90 6.40 -2.39 -0.02 2.88 16 44 H -0.01 -0.59 8.01 -2.38 -0.02 -0.61 16 45 H 0.00 -0.26 6.06 -2.39 -0.01 -0.27 16 46 H 0.26 16.53 7.22 -92.71 -0.67 15.86 16 Total: -1.00 -68.16 354.73 -1.05 -69.21 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.27 Total: 18.04 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 4.88 Total: -28.04 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -6.73 Total: -102.76 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -1.52 Total: -9.99 kcal Atomic # 14 Polarization: 51.49 SS G_CDS: 2.05 Total: 53.55 kcal Total: -68.16 -1.05 -69.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111705445.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.595 kcal (2) G-P(sol) polarization free energy of solvation -68.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds