Wall clock time and date at job start Mon Mar 30 2020 05:13:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42894 * 1
3 3 C 1.42902 * 114.00173 * 2 1
4 4 C 1.52994 * 109.47351 * 180.02562 * 3 2 1
5 5 N 1.46901 * 109.47030 * 64.99754 * 4 3 2
6 6 C 1.46903 * 110.99872 * 179.97438 * 5 4 3
7 7 C 1.52997 * 109.46975 * 185.20003 * 6 5 4
8 8 H 1.09001 * 109.46105 * 303.34223 * 7 6 5
9 9 C 1.53035 * 109.46675 * 63.31582 * 7 6 5
10 10 C 1.53120 * 109.28149 * 179.19532 * 9 7 6
11 11 C 1.53122 * 109.16048 * 302.34879 * 10 9 7
12 12 C 1.53032 * 109.27990 * 57.65138 * 11 10 9
13 13 N 1.46849 * 109.46226 * 183.37009 * 7 6 5
14 14 C 1.46900 * 111.00010 * 54.14219 * 13 7 6
15 15 C 1.52999 * 109.47120 * 175.82364 * 14 13 7
16 16 C 1.50697 * 109.47067 * 179.97438 * 15 14 13
17 17 H 1.07995 * 120.00546 * 0.02562 * 16 15 14
18 18 C 1.37884 * 119.99828 * 180.02562 * 16 15 14
19 19 N 1.31512 * 119.99936 * 359.97438 * 18 16 15
20 20 Si 1.86807 * 119.99734 * 180.02562 * 18 16 15
21 21 H 1.48501 * 109.46777 * 179.97438 * 20 18 16
22 22 H 1.48502 * 109.47064 * 299.99222 * 20 18 16
23 23 H 1.48495 * 109.47290 * 59.99730 * 20 18 16
24 24 H 1.09005 * 109.47089 * 179.97438 * 1 2 3
25 25 H 1.09006 * 109.47299 * 299.99520 * 1 2 3
26 26 H 1.08993 * 109.47524 * 59.99630 * 1 2 3
27 27 H 1.09005 * 109.46442 * 60.00001 * 3 2 1
28 28 H 1.08993 * 109.47018 * 300.00670 * 3 2 1
29 29 H 1.09003 * 109.47265 * 305.00144 * 4 3 2
30 30 H 1.09003 * 109.47429 * 185.00110 * 4 3 2
31 31 H 1.00888 * 111.00467 * 303.95728 * 5 4 3
32 32 H 1.08996 * 109.46883 * 65.20066 * 6 5 4
33 33 H 1.08996 * 109.47477 * 305.19931 * 6 5 4
34 34 H 1.08999 * 109.50255 * 299.13782 * 9 7 6
35 35 H 1.08998 * 109.50310 * 59.21351 * 9 7 6
36 36 H 1.09002 * 109.52188 * 62.24720 * 10 9 7
37 37 H 1.08998 * 109.52198 * 182.43761 * 10 9 7
38 38 H 1.08997 * 109.50463 * 177.59695 * 11 10 9
39 39 H 1.09005 * 109.49992 * 297.67138 * 11 10 9
40 40 H 1.09003 * 109.45946 * 180.80630 * 12 11 10
41 41 H 1.09002 * 109.46498 * 60.83754 * 12 11 10
42 42 H 1.09003 * 109.47099 * 55.82748 * 14 13 7
43 43 H 1.08996 * 109.47374 * 295.82446 * 14 13 7
44 44 H 1.09006 * 109.47301 * 60.00027 * 15 14 13
45 45 H 1.09002 * 109.47471 * 300.00321 * 15 14 13
46 46 H 0.96993 * 120.00549 * 0.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1847 -0.0006
5 7 3.9768 0.5627 -1.2562
6 6 5.4394 0.4308 -1.2925
7 6 5.8698 -0.0989 -2.6619
8 1 5.3662 -1.0451 -2.8599
9 6 5.4915 0.9159 -3.7431
10 6 5.9420 0.3909 -5.1091
11 6 7.4516 0.1365 -5.0769
12 6 7.7730 -0.8557 -3.9570
13 7 7.3234 -0.3070 -2.6712
14 6 7.7389 -1.1692 -1.5568
15 6 9.2398 -1.4476 -1.6595
16 6 9.6662 -2.3316 -0.5159
17 1 8.9393 -2.6622 0.2112
18 6 10.9844 -2.7183 -0.3978
19 7 11.8695 -2.3161 -1.2835
20 14 11.5127 -3.8147 1.0194
21 1 12.9696 -4.0847 0.9197
22 1 11.2220 -3.1341 2.3068
23 1 10.7667 -5.0972 0.9578
24 1 -0.3633 -1.0277 -0.0005
25 1 -0.3634 0.5138 0.8901
26 1 -0.3634 0.5138 -0.8899
27 1 1.6885 1.8463 0.8901
28 1 1.6885 1.8464 -0.8899
29 1 3.8514 0.5682 0.8409
30 1 3.9785 2.1765 0.0889
31 1 3.5293 -0.3310 -1.3939
32 1 5.7609 -0.2640 -0.5168
33 1 5.8965 1.4051 -1.1198
34 1 4.4109 1.0585 -3.7463
35 1 5.9833 1.8667 -3.5378
36 1 5.4205 -0.5401 -5.3316
37 1 5.7134 1.1300 -5.8769
38 1 7.7714 -0.2777 -6.0330
39 1 7.9749 1.0750 -4.8936
40 1 8.8488 -1.0279 -3.9221
41 1 7.2604 -1.7984 -4.1488
42 1 7.1909 -2.1105 -1.6017
43 1 7.5259 -0.6696 -0.6118
44 1 9.7879 -0.5064 -1.6145
45 1 9.4529 -1.9473 -2.6045
46 1 11.5951 -1.7472 -2.0196
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000111705445.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:13:21
Heat of formation + Delta-G solvation = -83.800565 kcal
Electronic energy + Delta-G solvation = -21481.036117 eV
Core-core repulsion = 18403.794277 eV
Total energy + Delta-G solvation = -3077.241840 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-40.54286 -39.02584 -36.81331 -36.15331 -34.42049 -32.82120 -30.64545 -29.94327
-27.24171 -26.56653 -25.78827 -24.92955 -22.86939 -22.36073 -21.91867 -20.61358
-18.96307 -17.59966 -17.25835 -16.98943 -16.56053 -16.16918 -15.93044 -15.71623
-15.62597 -15.14871 -15.04008 -14.72194 -14.52474 -14.23663 -13.86925 -13.62245
-13.29930 -13.15939 -12.84069 -12.77945 -12.66067 -12.41707 -12.14407 -12.10201
-12.03897 -11.93015 -11.85867 -11.55373 -11.13510 -11.05006 -10.73849 -10.61353
-10.54430 -9.45924 -9.25961 -8.72282 -6.42430 1.50269 1.59116 1.78779
2.53328 2.75634 2.89272 3.13260 3.34114 3.79605 3.88281 3.94575
4.08774 4.13623 4.26686 4.31170 4.34237 4.38329 4.43120 4.49782
4.53572 4.54235 4.59063 4.61378 4.75663 4.82221 4.86338 4.87687
4.88784 4.91458 4.94708 5.06988 5.11041 5.22626 5.26242 5.33700
5.39614 5.51919 5.83600 5.93053 6.13368 6.18413 6.23838 6.25656
6.37046 6.55524 7.39626 8.68868
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.014758 B = 0.004262 C = 0.003438
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1896.804348 B = 6568.452393 C = 8142.289680
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.421 6.421
3 C 0.066 3.934
4 C 0.059 3.941
5 N -0.677 5.677
6 C 0.071 3.929
7 C 0.091 3.909
8 H 0.025 0.975
9 C -0.090 4.090
10 C -0.117 4.117
11 C -0.110 4.110
12 C 0.053 3.947
13 N -0.539 5.539
14 C 0.086 3.914
15 C 0.019 3.981
16 C -0.623 4.623
17 H 0.048 0.952
18 C -0.037 4.037
19 N -0.935 5.935
20 Si 1.119 2.881
21 H -0.281 1.281
22 H -0.268 1.268
23 H -0.269 1.269
24 H 0.090 0.910
25 H 0.051 0.949
26 H 0.050 0.950
27 H 0.070 0.930
28 H 0.065 0.935
29 H 0.025 0.975
30 H 0.097 0.903
31 H 0.344 0.656
32 H 0.015 0.985
33 H 0.076 0.924
34 H 0.087 0.913
35 H 0.061 0.939
36 H 0.057 0.943
37 H 0.084 0.916
38 H 0.077 0.923
39 H 0.064 0.936
40 H 0.055 0.945
41 H 0.020 0.980
42 H 0.009 0.991
43 H 0.064 0.936
44 H -0.010 1.010
45 H -0.004 1.004
46 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.108 8.226 -2.101 23.682
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.340 6.340
3 C -0.010 4.010
4 C -0.070 4.070
5 N -0.308 5.308
6 C -0.058 4.058
7 C -0.017 4.017
8 H 0.043 0.957
9 C -0.127 4.127
10 C -0.154 4.154
11 C -0.148 4.148
12 C -0.075 4.075
13 N -0.265 5.265
14 C -0.042 4.042
15 C -0.019 4.019
16 C -0.661 4.661
17 H 0.066 0.934
18 C -0.234 4.234
19 N -0.572 5.572
20 Si 0.939 3.061
21 H -0.206 1.206
22 H -0.193 1.193
23 H -0.195 1.195
24 H 0.108 0.892
25 H 0.069 0.931
26 H 0.069 0.931
27 H 0.088 0.912
28 H 0.083 0.917
29 H 0.043 0.957
30 H 0.115 0.885
31 H 0.162 0.838
32 H 0.034 0.966
33 H 0.094 0.906
34 H 0.105 0.895
35 H 0.080 0.920
36 H 0.076 0.924
37 H 0.102 0.898
38 H 0.096 0.904
39 H 0.083 0.917
40 H 0.074 0.926
41 H 0.038 0.962
42 H 0.027 0.973
43 H 0.082 0.918
44 H 0.008 0.992
45 H 0.014 0.986
46 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -20.505 8.368 -1.725 22.214
hybrid contribution -1.290 -0.691 -0.131 1.470
sum -21.795 7.677 -1.856 23.182
Atomic orbital electron populations
1.22865 0.79521 1.03489 1.00848 1.87828 1.21517 1.29071 1.95622
1.22623 0.92254 0.84578 1.01573 1.22057 0.94298 1.00478 0.90196
1.60431 1.05210 1.29852 1.35326 1.21876 0.88389 1.00467 0.95115
1.21591 0.86242 0.97656 0.96244 0.95718 1.21439 1.01598 0.97277
0.92435 1.21602 0.94616 1.01437 0.97751 1.21579 0.97522 0.98922
0.96754 1.22125 0.99723 0.96031 0.89598 1.62002 1.13328 1.48287
1.02859 1.21842 0.95777 0.92844 0.93708 1.19169 0.92576 0.94555
0.95562 1.22437 0.97037 1.33963 1.12661 0.93395 1.27467 0.93412
0.99142 1.03400 1.70904 1.37184 1.34724 1.14350 0.82929 0.76023
0.74787 0.72349 1.20619 1.19324 1.19469 0.89174 0.93085 0.93138
0.91230 0.91668 0.95666 0.88521 0.83845 0.96649 0.90598 0.89456
0.92042 0.92391 0.89751 0.90424 0.91705 0.92621 0.96213 0.97308
0.91760 0.99161 0.98631 0.93532
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.38 11.01 113.37 1.25 1.63 16
2 O -0.42 -8.47 10.22 -148.98 -1.52 -9.99 16
3 C 0.07 1.11 6.28 71.98 0.45 1.56 16
4 C 0.06 1.20 6.10 86.30 0.53 1.72 16
5 N -0.68 -16.00 5.87 -513.90 -3.02 -19.02 16
6 C 0.07 2.06 4.78 86.30 0.41 2.47 16
7 C 0.09 2.80 2.11 44.94 0.09 2.89 16
8 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16
9 C -0.09 -2.25 5.23 30.65 0.16 -2.09 16
10 C -0.12 -2.71 6.00 30.68 0.18 -2.53 16
11 C -0.11 -3.06 6.09 30.65 0.19 -2.87 16
12 C 0.05 1.94 5.03 86.32 0.43 2.37 16
13 N -0.54 -20.46 4.60 -871.11 -4.01 -24.47 16
14 C 0.09 3.88 4.38 86.30 0.38 4.26 16
15 C 0.02 1.02 3.78 29.85 0.11 1.13 16
16 C -0.62 -37.10 9.11 25.60 0.23 -36.86 16
17 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16
18 C -0.04 -2.19 5.46 84.66 0.46 -1.73 16
19 N -0.93 -59.57 13.65 21.45 0.29 -59.28 16
20 Si 1.12 51.49 29.90 68.60 2.05 53.55 16
21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16
22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16
23 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16
24 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16
25 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16
26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16
27 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16
28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
29 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16
30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16
31 H 0.34 8.48 8.35 -89.70 -0.75 7.73 16
32 H 0.02 0.51 6.22 -2.39 -0.01 0.50 16
33 H 0.08 2.24 8.13 -2.39 -0.02 2.22 16
34 H 0.09 1.97 7.73 -2.39 -0.02 1.95 16
35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16
36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16
37 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16
38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16
39 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16
40 H 0.06 2.35 5.84 -2.39 -0.01 2.34 16
41 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16
42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16
43 H 0.06 2.90 6.40 -2.39 -0.02 2.88 16
44 H -0.01 -0.59 8.01 -2.38 -0.02 -0.61 16
45 H 0.00 -0.26 6.06 -2.39 -0.01 -0.27 16
46 H 0.26 16.53 7.22 -92.71 -0.67 15.86 16
Total: -1.00 -68.16 354.73 -1.05 -69.21
By element:
Atomic # 1 Polarization: 17.77 SS G_CDS: 0.27 Total: 18.04 kcal
Atomic # 6 Polarization: -32.92 SS G_CDS: 4.88 Total: -28.04 kcal
Atomic # 7 Polarization: -96.03 SS G_CDS: -6.73 Total: -102.76 kcal
Atomic # 8 Polarization: -8.47 SS G_CDS: -1.52 Total: -9.99 kcal
Atomic # 14 Polarization: 51.49 SS G_CDS: 2.05 Total: 53.55 kcal
Total: -68.16 -1.05 -69.21 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000111705445.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.595 kcal
(2) G-P(sol) polarization free energy of solvation -68.160 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.755 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.045 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.206 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.801 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds