Wall clock time and date at job start Mon Mar 30 2020 05:35:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81405 * 1
3 3 O 1.42094 * 110.54442 * 2 1
4 4 O 1.42108 * 110.53980 * 223.24746 * 2 1 3
5 5 C 1.76203 * 104.44937 * 111.62691 * 2 1 3
6 6 C 1.38814 * 119.84836 * 114.97864 * 5 2 1
7 7 C 1.38773 * 120.59365 * 180.02562 * 6 5 2
8 8 C 1.36522 * 120.30256 * 359.77929 * 7 6 5
9 9 C 1.41258 * 119.68894 * 0.47211 * 8 7 6
10 10 C 1.40352 * 120.28711 * 179.79035 * 9 8 7
11 11 H 1.07998 * 119.99730 * 154.60506 * 10 9 8
12 12 C 1.46539 * 120.00183 * 334.31755 * 10 9 8
13 13 N 1.29504 * 120.00068 * 161.50450 * 12 10 9
14 14 Si 1.86806 * 120.00097 * 341.51266 * 12 10 9
15 15 H 1.48497 * 109.46826 * 94.19389 * 14 12 10
16 16 H 1.48494 * 109.47035 * 214.19422 * 14 12 10
17 17 H 1.48497 * 109.46840 * 334.19406 * 14 12 10
18 18 C 1.36478 * 119.84634 * 294.99680 * 5 2 1
19 19 N 1.48012 * 120.15920 * 359.96193 * 18 5 2
20 20 O 1.31699 * 119.99697 * 270.02069 * 19 18 5
21 21 O 1.31695 * 120.00494 * 90.01822 * 19 18 5
22 22 H 1.08998 * 109.46726 * 308.37287 * 1 2 3
23 23 H 1.08998 * 109.46764 * 68.37337 * 1 2 3
24 24 H 1.09001 * 109.46758 * 188.37189 * 1 2 3
25 25 H 1.07995 * 119.70597 * 0.02562 * 6 5 2
26 26 H 1.08003 * 119.84671 * 180.02562 * 7 6 5
27 27 H 1.08006 * 120.15573 * 180.26190 * 8 7 6
28 28 H 0.96998 * 119.99716 * 180.02562 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8141 0.0000 0.0000
3 8 2.3127 1.3306 0.0000
4 8 2.3127 -0.9693 -0.9118
5 6 2.2537 -0.6289 1.5862
6 6 2.9185 -1.8433 1.6879
7 6 3.2716 -2.3533 2.9293
8 6 2.9725 -1.6625 4.0683
9 6 2.2916 -0.4281 3.9794
10 6 1.9740 0.2904 5.1425
11 1 1.8431 1.3615 5.0967
12 6 1.8137 -0.4134 6.4177
13 7 1.8786 0.2429 7.5322
14 14 1.5159 -2.2575 6.4358
15 1 2.8112 -2.9665 6.5936
16 1 0.6211 -2.6033 7.5693
17 1 0.8789 -2.6685 5.1590
18 6 1.9388 0.0801 2.7091
19 7 1.2304 1.3748 2.5968
20 8 1.9166 2.4933 2.4847
21 8 -0.0861 1.4084 2.6089
22 1 -0.3633 0.6380 0.8057
23 1 -0.3633 0.3788 -0.9553
24 1 -0.3633 -1.0167 0.1496
25 1 3.1630 -2.3961 0.7931
26 1 3.7890 -3.2991 2.9944
27 1 3.2523 -2.0596 5.0329
28 1 1.7729 -0.2231 8.3763
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000138093775.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:35:45
Heat of formation + Delta-G solvation = -17.444129 kcal
Electronic energy + Delta-G solvation = -19193.282173 eV
Core-core repulsion = 15920.619595 eV
Total energy + Delta-G solvation = -3272.662578 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 271.039 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.14692 -37.44245 -36.70489 -35.69454 -34.37698 -33.55269 -31.51947 -31.21372
-29.26824 -26.65540 -24.91669 -22.83077 -21.07979 -19.28062 -18.17779 -17.74053
-17.39861 -16.29711 -16.24843 -15.87868 -15.67608 -14.96939 -14.43195 -13.97546
-13.46121 -13.14467 -12.94542 -12.80419 -12.60465 -12.17872 -11.84325 -11.81780
-11.70609 -11.29143 -10.98443 -10.80970 -10.62699 -10.59798 -10.34525 -10.12489
-9.81457 -9.76038 -8.90678 -8.60180 -7.78403 -5.30214 0.26374 0.59138
1.31094 1.87227 2.11599 2.57239 2.72671 2.76846 3.04865 3.33993
3.59620 4.00450 4.38190 4.51776 4.95844 5.17232 5.41887 5.61778
5.67778 5.87044 5.91856 6.12197 6.18175 6.45139 6.68620 6.82404
6.98118 7.14594 7.39196 7.50768 7.74609 7.84351 9.15169
Molecular weight = 271.04amu
Principal moments of inertia in cm(-1)
A = 0.025306 B = 0.008474 C = 0.007156
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1106.187786 B = 3303.263464 C = 3911.691047
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.661 4.661
2 S 2.471 3.529
3 O -0.925 6.925
4 O -0.940 6.940
5 C -0.546 4.546
6 C -0.157 4.157
7 C -0.067 4.067
8 C -0.180 4.180
9 C 0.100 3.900
10 C -0.406 4.406
11 H 0.102 0.898
12 C 0.078 3.922
13 N -0.729 5.729
14 Si 0.921 3.079
15 H -0.256 1.256
16 H -0.274 1.274
17 H -0.234 1.234
18 C -0.066 4.066
19 N -0.022 5.022
20 O -0.109 6.109
21 O -0.198 6.198
22 H 0.150 0.850
23 H 0.130 0.870
24 H 0.134 0.866
25 H 0.137 0.863
26 H 0.120 0.880
27 H 0.121 0.879
28 H 0.306 0.694
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.025 -6.354 -4.393 7.986
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.812 4.812
2 S 2.652 3.348
3 O -0.922 6.922
4 O -0.938 6.938
5 C -0.635 4.635
6 C -0.178 4.178
7 C -0.086 4.086
8 C -0.199 4.199
9 C 0.095 3.905
10 C -0.430 4.430
11 H 0.120 0.880
12 C -0.155 4.155
13 N -0.346 5.346
14 Si 0.744 3.256
15 H -0.181 1.181
16 H -0.200 1.200
17 H -0.156 1.156
18 C -0.149 4.149
19 N 0.472 4.528
20 O -0.327 6.327
21 O -0.387 6.387
22 H 0.168 0.832
23 H 0.149 0.851
24 H 0.152 0.848
25 H 0.155 0.845
26 H 0.138 0.862
27 H 0.139 0.861
28 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -1.251 -6.711 -4.657 8.264
hybrid contribution -0.694 -0.430 1.094 1.366
sum -1.945 -7.141 -3.563 8.214
Atomic orbital electron populations
1.30480 1.24818 1.13022 1.12874 1.05895 0.78572 0.75236 0.75118
1.93686 1.77102 1.35506 1.85897 1.93534 1.77693 1.61576 1.60962
1.29153 1.11668 1.05506 1.17159 1.20208 1.04819 0.94350 0.98385
1.20691 0.97124 0.98359 0.92433 1.21044 1.03895 0.96752 0.98202
1.17000 0.91724 0.92255 0.89517 1.21037 1.35376 0.97206 0.89376
0.87980 1.27881 0.90501 1.03059 0.94015 1.68959 1.23723 1.41692
1.00232 0.86158 0.79991 0.78647 0.80799 1.18140 1.20025 1.15633
1.18825 1.14479 0.85794 0.95836 1.50523 1.02364 1.04818 0.95117
1.96243 1.66335 1.20475 1.49661 1.96087 0.90522 1.96092 1.56035
0.83238 0.85121 0.84767 0.84530 0.86231 0.86142 0.88121
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.66 -9.47 10.70 101.05 1.08 -8.39 15
2 S 2.47 44.93 5.33 -107.50 -0.57 44.35 15
3 O -0.92 -19.91 16.18 -63.74 -1.03 -20.94 15
4 O -0.94 -17.56 16.72 -57.54 -0.96 -18.52 15
5 C -0.55 -11.35 5.55 -40.00 -0.22 -11.57 15
6 C -0.16 -2.98 9.52 -39.17 -0.37 -3.36 15
7 C -0.07 -1.23 9.98 -40.00 -0.40 -1.63 15
8 C -0.18 -3.73 7.26 -39.05 -0.28 -4.02 15
9 C 0.10 2.39 5.27 -106.79 -0.56 1.82 15
10 C -0.41 -10.14 9.51 -35.44 -0.34 -10.47 15
11 H 0.10 2.80 7.72 -52.49 -0.41 2.39 15
12 C 0.08 1.75 5.59 -15.19 -0.08 1.67 15
13 N -0.73 -16.41 13.89 55.98 0.78 -15.63 15
14 Si 0.92 16.95 24.57 -169.99 -4.18 12.77 15
15 H -0.26 -4.35 6.69 56.52 0.38 -3.97 15
16 H -0.27 -4.78 7.11 56.52 0.40 -4.37 15
17 H -0.23 -4.42 6.84 56.52 0.39 -4.03 15
18 C -0.07 -1.55 6.18 -79.42 -0.49 -2.04 15
19 N -0.02 -0.53 2.65 34.22 0.09 -0.44 15
20 O -0.11 -2.75 18.92 -36.86 -0.70 -3.44 15
21 O -0.20 -4.55 17.12 -31.57 -0.54 -5.09 15
22 H 0.15 2.44 4.80 -51.93 -0.25 2.19 15
23 H 0.13 1.43 8.14 -51.93 -0.42 1.01 15
24 H 0.13 1.60 8.14 -51.92 -0.42 1.18 15
25 H 0.14 2.28 7.19 -52.49 -0.38 1.90 15
26 H 0.12 1.72 8.06 -52.48 -0.42 1.29 15
27 H 0.12 2.31 4.28 -52.48 -0.22 2.09 15
28 H 0.31 5.92 8.27 -40.82 -0.34 5.58 15
LS Contribution 262.17 15.07 3.95 3.95
Total: -1.00 -29.19 262.17 -6.53 -35.72
By element:
Atomic # 1 Polarization: 6.95 SS G_CDS: -1.70 Total: 5.26 kcal
Atomic # 6 Polarization: -36.31 SS G_CDS: -1.67 Total: -37.98 kcal
Atomic # 7 Polarization: -16.94 SS G_CDS: 0.87 Total: -16.07 kcal
Atomic # 8 Polarization: -44.76 SS G_CDS: -3.23 Total: -48.00 kcal
Atomic # 14 Polarization: 16.95 SS G_CDS: -4.18 Total: 12.77 kcal
Atomic # 16 Polarization: 44.93 SS G_CDS: -0.57 Total: 44.35 kcal
Total LS contribution 3.95 Total: 3.95 kcal
Total: -29.19 -6.53 -35.72 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000138093775.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.272 kcal
(2) G-P(sol) polarization free energy of solvation -29.186 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.913 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.717 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.444 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds