Wall clock time and date at job start Mon Mar 30 2020 05:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42094 * 110.54442 * 2 1 4 4 O 1.42108 * 110.53980 * 223.24746 * 2 1 3 5 5 C 1.76203 * 104.44937 * 111.62691 * 2 1 3 6 6 C 1.38814 * 119.84836 * 114.97864 * 5 2 1 7 7 C 1.38773 * 120.59365 * 180.02562 * 6 5 2 8 8 C 1.36522 * 120.30256 * 359.77929 * 7 6 5 9 9 C 1.41258 * 119.68894 * 0.47211 * 8 7 6 10 10 C 1.40352 * 120.28711 * 179.79035 * 9 8 7 11 11 H 1.07998 * 119.99730 * 154.60506 * 10 9 8 12 12 C 1.46539 * 120.00183 * 334.31755 * 10 9 8 13 13 N 1.29504 * 120.00068 * 161.50450 * 12 10 9 14 14 Si 1.86806 * 120.00097 * 341.51266 * 12 10 9 15 15 H 1.48497 * 109.46826 * 94.19389 * 14 12 10 16 16 H 1.48494 * 109.47035 * 214.19422 * 14 12 10 17 17 H 1.48497 * 109.46840 * 334.19406 * 14 12 10 18 18 C 1.36478 * 119.84634 * 294.99680 * 5 2 1 19 19 N 1.48012 * 120.15920 * 359.96193 * 18 5 2 20 20 O 1.31699 * 119.99697 * 270.02069 * 19 18 5 21 21 O 1.31695 * 120.00494 * 90.01822 * 19 18 5 22 22 H 1.08998 * 109.46726 * 308.37287 * 1 2 3 23 23 H 1.08998 * 109.46764 * 68.37337 * 1 2 3 24 24 H 1.09001 * 109.46758 * 188.37189 * 1 2 3 25 25 H 1.07995 * 119.70597 * 0.02562 * 6 5 2 26 26 H 1.08003 * 119.84671 * 180.02562 * 7 6 5 27 27 H 1.08006 * 120.15573 * 180.26190 * 8 7 6 28 28 H 0.96998 * 119.99716 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9118 5 6 2.2537 -0.6289 1.5862 6 6 2.9185 -1.8433 1.6879 7 6 3.2716 -2.3533 2.9293 8 6 2.9725 -1.6625 4.0683 9 6 2.2916 -0.4281 3.9794 10 6 1.9740 0.2904 5.1425 11 1 1.8431 1.3615 5.0967 12 6 1.8137 -0.4134 6.4177 13 7 1.8786 0.2429 7.5322 14 14 1.5159 -2.2575 6.4358 15 1 2.8112 -2.9665 6.5936 16 1 0.6211 -2.6033 7.5693 17 1 0.8789 -2.6685 5.1590 18 6 1.9388 0.0801 2.7091 19 7 1.2304 1.3748 2.5968 20 8 1.9166 2.4933 2.4847 21 8 -0.0861 1.4084 2.6089 22 1 -0.3633 0.6380 0.8057 23 1 -0.3633 0.3788 -0.9553 24 1 -0.3633 -1.0167 0.1496 25 1 3.1630 -2.3961 0.7931 26 1 3.7890 -3.2991 2.9944 27 1 3.2523 -2.0596 5.0329 28 1 1.7729 -0.2231 8.3763 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000138093775.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:45 Heat of formation + Delta-G solvation = -17.444129 kcal Electronic energy + Delta-G solvation = -19193.282173 eV Core-core repulsion = 15920.619595 eV Total energy + Delta-G solvation = -3272.662578 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.039 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.14692 -37.44245 -36.70489 -35.69454 -34.37698 -33.55269 -31.51947 -31.21372 -29.26824 -26.65540 -24.91669 -22.83077 -21.07979 -19.28062 -18.17779 -17.74053 -17.39861 -16.29711 -16.24843 -15.87868 -15.67608 -14.96939 -14.43195 -13.97546 -13.46121 -13.14467 -12.94542 -12.80419 -12.60465 -12.17872 -11.84325 -11.81780 -11.70609 -11.29143 -10.98443 -10.80970 -10.62699 -10.59798 -10.34525 -10.12489 -9.81457 -9.76038 -8.90678 -8.60180 -7.78403 -5.30214 0.26374 0.59138 1.31094 1.87227 2.11599 2.57239 2.72671 2.76846 3.04865 3.33993 3.59620 4.00450 4.38190 4.51776 4.95844 5.17232 5.41887 5.61778 5.67778 5.87044 5.91856 6.12197 6.18175 6.45139 6.68620 6.82404 6.98118 7.14594 7.39196 7.50768 7.74609 7.84351 9.15169 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.008474 C = 0.007156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.187786 B = 3303.263464 C = 3911.691047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.661 4.661 2 S 2.471 3.529 3 O -0.925 6.925 4 O -0.940 6.940 5 C -0.546 4.546 6 C -0.157 4.157 7 C -0.067 4.067 8 C -0.180 4.180 9 C 0.100 3.900 10 C -0.406 4.406 11 H 0.102 0.898 12 C 0.078 3.922 13 N -0.729 5.729 14 Si 0.921 3.079 15 H -0.256 1.256 16 H -0.274 1.274 17 H -0.234 1.234 18 C -0.066 4.066 19 N -0.022 5.022 20 O -0.109 6.109 21 O -0.198 6.198 22 H 0.150 0.850 23 H 0.130 0.870 24 H 0.134 0.866 25 H 0.137 0.863 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 -6.354 -4.393 7.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.812 4.812 2 S 2.652 3.348 3 O -0.922 6.922 4 O -0.938 6.938 5 C -0.635 4.635 6 C -0.178 4.178 7 C -0.086 4.086 8 C -0.199 4.199 9 C 0.095 3.905 10 C -0.430 4.430 11 H 0.120 0.880 12 C -0.155 4.155 13 N -0.346 5.346 14 Si 0.744 3.256 15 H -0.181 1.181 16 H -0.200 1.200 17 H -0.156 1.156 18 C -0.149 4.149 19 N 0.472 4.528 20 O -0.327 6.327 21 O -0.387 6.387 22 H 0.168 0.832 23 H 0.149 0.851 24 H 0.152 0.848 25 H 0.155 0.845 26 H 0.138 0.862 27 H 0.139 0.861 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.251 -6.711 -4.657 8.264 hybrid contribution -0.694 -0.430 1.094 1.366 sum -1.945 -7.141 -3.563 8.214 Atomic orbital electron populations 1.30480 1.24818 1.13022 1.12874 1.05895 0.78572 0.75236 0.75118 1.93686 1.77102 1.35506 1.85897 1.93534 1.77693 1.61576 1.60962 1.29153 1.11668 1.05506 1.17159 1.20208 1.04819 0.94350 0.98385 1.20691 0.97124 0.98359 0.92433 1.21044 1.03895 0.96752 0.98202 1.17000 0.91724 0.92255 0.89517 1.21037 1.35376 0.97206 0.89376 0.87980 1.27881 0.90501 1.03059 0.94015 1.68959 1.23723 1.41692 1.00232 0.86158 0.79991 0.78647 0.80799 1.18140 1.20025 1.15633 1.18825 1.14479 0.85794 0.95836 1.50523 1.02364 1.04818 0.95117 1.96243 1.66335 1.20475 1.49661 1.96087 0.90522 1.96092 1.56035 0.83238 0.85121 0.84767 0.84530 0.86231 0.86142 0.88121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -9.47 10.70 101.05 1.08 -8.39 15 2 S 2.47 44.93 5.33 -107.50 -0.57 44.35 15 3 O -0.92 -19.91 16.18 -63.74 -1.03 -20.94 15 4 O -0.94 -17.56 16.72 -57.54 -0.96 -18.52 15 5 C -0.55 -11.35 5.55 -40.00 -0.22 -11.57 15 6 C -0.16 -2.98 9.52 -39.17 -0.37 -3.36 15 7 C -0.07 -1.23 9.98 -40.00 -0.40 -1.63 15 8 C -0.18 -3.73 7.26 -39.05 -0.28 -4.02 15 9 C 0.10 2.39 5.27 -106.79 -0.56 1.82 15 10 C -0.41 -10.14 9.51 -35.44 -0.34 -10.47 15 11 H 0.10 2.80 7.72 -52.49 -0.41 2.39 15 12 C 0.08 1.75 5.59 -15.19 -0.08 1.67 15 13 N -0.73 -16.41 13.89 55.98 0.78 -15.63 15 14 Si 0.92 16.95 24.57 -169.99 -4.18 12.77 15 15 H -0.26 -4.35 6.69 56.52 0.38 -3.97 15 16 H -0.27 -4.78 7.11 56.52 0.40 -4.37 15 17 H -0.23 -4.42 6.84 56.52 0.39 -4.03 15 18 C -0.07 -1.55 6.18 -79.42 -0.49 -2.04 15 19 N -0.02 -0.53 2.65 34.22 0.09 -0.44 15 20 O -0.11 -2.75 18.92 -36.86 -0.70 -3.44 15 21 O -0.20 -4.55 17.12 -31.57 -0.54 -5.09 15 22 H 0.15 2.44 4.80 -51.93 -0.25 2.19 15 23 H 0.13 1.43 8.14 -51.93 -0.42 1.01 15 24 H 0.13 1.60 8.14 -51.92 -0.42 1.18 15 25 H 0.14 2.28 7.19 -52.49 -0.38 1.90 15 26 H 0.12 1.72 8.06 -52.48 -0.42 1.29 15 27 H 0.12 2.31 4.28 -52.48 -0.22 2.09 15 28 H 0.31 5.92 8.27 -40.82 -0.34 5.58 15 LS Contribution 262.17 15.07 3.95 3.95 Total: -1.00 -29.19 262.17 -6.53 -35.72 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -1.70 Total: 5.26 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: -1.67 Total: -37.98 kcal Atomic # 7 Polarization: -16.94 SS G_CDS: 0.87 Total: -16.07 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -3.23 Total: -48.00 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -4.18 Total: 12.77 kcal Atomic # 16 Polarization: 44.93 SS G_CDS: -0.57 Total: 44.35 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.19 -6.53 -35.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138093775.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.272 kcal (2) G-P(sol) polarization free energy of solvation -29.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds