Wall clock time and date at job start Mon Mar 30 2020 05:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42094 * 110.54442 * 2 1 4 4 O 1.42108 * 110.53980 * 223.24746 * 2 1 3 5 5 C 1.76203 * 104.44937 * 111.62691 * 2 1 3 6 6 C 1.38814 * 119.84836 * 114.97864 * 5 2 1 7 7 C 1.38773 * 120.59365 * 180.02562 * 6 5 2 8 8 C 1.36522 * 120.30256 * 359.77929 * 7 6 5 9 9 C 1.41258 * 119.68894 * 0.47211 * 8 7 6 10 10 C 1.40352 * 120.28711 * 179.79035 * 9 8 7 11 11 H 1.07998 * 119.99730 * 154.60506 * 10 9 8 12 12 C 1.46539 * 120.00183 * 334.31755 * 10 9 8 13 13 N 1.29504 * 120.00068 * 161.50450 * 12 10 9 14 14 Si 1.86806 * 120.00097 * 341.51266 * 12 10 9 15 15 H 1.48497 * 109.46826 * 94.19389 * 14 12 10 16 16 H 1.48494 * 109.47035 * 214.19422 * 14 12 10 17 17 H 1.48497 * 109.46840 * 334.19406 * 14 12 10 18 18 C 1.36478 * 119.84634 * 294.99680 * 5 2 1 19 19 N 1.48012 * 120.15920 * 359.96193 * 18 5 2 20 20 O 1.31699 * 119.99697 * 270.02069 * 19 18 5 21 21 O 1.31695 * 120.00494 * 90.01822 * 19 18 5 22 22 H 1.08998 * 109.46726 * 308.37287 * 1 2 3 23 23 H 1.08998 * 109.46764 * 68.37337 * 1 2 3 24 24 H 1.09001 * 109.46758 * 188.37189 * 1 2 3 25 25 H 1.07995 * 119.70597 * 0.02562 * 6 5 2 26 26 H 1.08003 * 119.84671 * 180.02562 * 7 6 5 27 27 H 1.08006 * 120.15573 * 180.26190 * 8 7 6 28 28 H 0.96998 * 119.99716 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9118 5 6 2.2537 -0.6289 1.5862 6 6 2.9185 -1.8433 1.6879 7 6 3.2716 -2.3533 2.9293 8 6 2.9725 -1.6625 4.0683 9 6 2.2916 -0.4281 3.9794 10 6 1.9740 0.2904 5.1425 11 1 1.8431 1.3615 5.0967 12 6 1.8137 -0.4134 6.4177 13 7 1.8786 0.2429 7.5322 14 14 1.5159 -2.2575 6.4358 15 1 2.8112 -2.9665 6.5936 16 1 0.6211 -2.6033 7.5693 17 1 0.8789 -2.6685 5.1590 18 6 1.9388 0.0801 2.7091 19 7 1.2304 1.3748 2.5968 20 8 1.9166 2.4933 2.4847 21 8 -0.0861 1.4084 2.6089 22 1 -0.3633 0.6380 0.8057 23 1 -0.3633 0.3788 -0.9553 24 1 -0.3633 -1.0167 0.1496 25 1 3.1630 -2.3961 0.7931 26 1 3.7890 -3.2991 2.9944 27 1 3.2523 -2.0596 5.0329 28 1 1.7729 -0.2231 8.3763 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000138093775.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:35:45 Heat of formation + Delta-G solvation = -38.581298 kcal Electronic energy + Delta-G solvation = -19194.198750 eV Core-core repulsion = 15920.619595 eV Total energy + Delta-G solvation = -3273.579154 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.039 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.85993 -39.17414 -38.23329 -37.19211 -36.02901 -35.43926 -33.16808 -32.84311 -30.47445 -28.38955 -26.65206 -24.43998 -22.76298 -20.85545 -19.72288 -19.45146 -19.26127 -17.93015 -17.80479 -17.34288 -17.19709 -16.54475 -15.96692 -15.62915 -14.95761 -14.60300 -14.29684 -14.14827 -14.08991 -13.66115 -13.46683 -13.32590 -13.20437 -12.79308 -12.68818 -12.51727 -12.22310 -12.08375 -12.03907 -11.74703 -11.65573 -11.31154 -10.47089 -10.26392 -9.41481 -7.08324 -1.29087 -1.11021 -0.30929 0.26443 0.34795 1.10715 1.27713 1.37760 1.60871 1.85994 2.05922 2.58514 2.80008 3.05399 3.84283 3.91550 3.99889 4.09136 4.12042 4.32245 4.47095 4.54792 4.79421 4.92309 5.02439 5.19413 5.34561 5.48041 5.62139 5.69386 6.00887 6.12237 7.60328 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.008474 C = 0.007156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.187786 B = 3303.263464 C = 3911.691047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.639 4.639 2 S 2.474 3.526 3 O -0.969 6.969 4 O -0.945 6.945 5 C -0.567 4.567 6 C -0.138 4.138 7 C -0.057 4.057 8 C -0.186 4.186 9 C 0.091 3.909 10 C -0.459 4.459 11 H 0.050 0.950 12 C 0.047 3.953 13 N -0.769 5.769 14 Si 0.973 3.027 15 H -0.224 1.224 16 H -0.258 1.258 17 H -0.239 1.239 18 C -0.105 4.105 19 N -0.016 5.016 20 O -0.183 6.183 21 O -0.155 6.155 22 H 0.132 0.868 23 H 0.171 0.829 24 H 0.168 0.832 25 H 0.169 0.831 26 H 0.175 0.825 27 H 0.139 0.861 28 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.535 -10.450 -5.520 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.656 3.344 3 O -0.966 6.966 4 O -0.942 6.942 5 C -0.653 4.653 6 C -0.158 4.158 7 C -0.076 4.076 8 C -0.205 4.205 9 C 0.086 3.914 10 C -0.483 4.483 11 H 0.069 0.931 12 C -0.182 4.182 13 N -0.387 5.387 14 Si 0.790 3.210 15 H -0.148 1.148 16 H -0.183 1.183 17 H -0.161 1.161 18 C -0.188 4.188 19 N 0.476 4.524 20 O -0.382 6.382 21 O -0.362 6.362 22 H 0.150 0.850 23 H 0.189 0.811 24 H 0.186 0.814 25 H 0.186 0.814 26 H 0.192 0.808 27 H 0.156 0.844 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.537 -10.695 -5.769 12.248 hybrid contribution -0.665 0.736 1.280 1.619 sum -2.202 -9.959 -4.489 11.144 Atomic orbital electron populations 1.30313 1.19394 1.15119 1.14450 1.05835 0.80630 0.73997 0.73922 1.93644 1.79463 1.37487 1.86038 1.93517 1.79230 1.61197 1.60258 1.29635 1.12126 1.05982 1.17601 1.20870 1.01595 0.93209 1.00093 1.21308 0.95542 0.99753 0.90973 1.21361 1.03319 0.95568 1.00259 1.17333 0.91450 0.93592 0.89041 1.20906 1.40055 0.95326 0.91984 0.93131 1.28729 0.89530 1.07306 0.92613 1.68946 1.24727 1.43875 1.01176 0.85444 0.81557 0.73031 0.80996 1.14756 1.18328 1.16147 1.19219 1.17017 0.85570 0.97001 1.50732 1.02209 1.05318 0.94114 1.96250 1.66369 1.21358 1.54252 1.96023 0.91138 1.96150 1.52850 0.85012 0.81111 0.81418 0.81412 0.80800 0.84411 0.86596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -16.08 10.70 113.37 1.21 -14.87 15 2 S 2.47 85.96 5.33 -56.49 -0.30 85.66 15 3 O -0.97 -42.49 16.18 -121.73 -1.97 -44.46 15 4 O -0.94 -32.54 16.72 -127.65 -2.13 -34.67 15 5 C -0.57 -22.71 5.55 22.00 0.12 -22.59 15 6 C -0.14 -4.69 9.52 22.54 0.21 -4.47 15 7 C -0.06 -1.83 9.98 22.00 0.22 -1.61 15 8 C -0.19 -7.26 7.26 22.61 0.16 -7.09 15 9 C 0.09 4.36 5.27 -21.27 -0.11 4.25 15 10 C -0.46 -24.17 9.51 24.95 0.24 -23.94 15 11 H 0.05 3.07 7.72 -2.91 -0.02 3.04 15 12 C 0.05 2.13 5.59 87.20 0.49 2.62 15 13 N -0.77 -35.79 13.89 23.21 0.32 -35.47 15 14 Si 0.97 32.81 24.57 68.60 1.69 34.49 15 15 H -0.22 -6.40 6.69 99.48 0.67 -5.73 15 16 H -0.26 -7.99 7.11 99.48 0.71 -7.28 15 17 H -0.24 -8.18 6.84 99.48 0.68 -7.50 15 18 C -0.11 -5.02 6.18 36.72 0.23 -4.79 15 19 N -0.02 -0.78 2.65 -45.66 -0.12 -0.90 15 20 O -0.18 -10.00 18.92 8.58 0.16 -9.83 15 21 O -0.15 -7.25 17.12 3.52 0.06 -7.19 15 22 H 0.13 4.01 4.80 -2.39 -0.01 4.00 15 23 H 0.17 2.97 8.14 -2.39 -0.02 2.95 15 24 H 0.17 3.15 8.14 -2.39 -0.02 3.13 15 25 H 0.17 4.68 7.19 -2.91 -0.02 4.66 15 26 H 0.17 3.72 8.06 -2.91 -0.02 3.69 15 27 H 0.14 4.82 4.28 -2.91 -0.01 4.81 15 28 H 0.32 12.56 8.27 -92.71 -0.77 11.79 15 Total: -1.00 -68.94 262.17 1.63 -67.31 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 1.16 Total: 17.56 kcal Atomic # 6 Polarization: -75.26 SS G_CDS: 2.77 Total: -72.49 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.20 Total: -36.37 kcal Atomic # 8 Polarization: -92.28 SS G_CDS: -3.88 Total: -96.16 kcal Atomic # 14 Polarization: 32.81 SS G_CDS: 1.69 Total: 34.49 kcal Atomic # 16 Polarization: 85.96 SS G_CDS: -0.30 Total: 85.66 kcal Total: -68.94 1.63 -67.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000138093775.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.727 kcal (2) G-P(sol) polarization free energy of solvation -68.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds