Wall clock time and date at job start Mon Mar 30 2020 05:33:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.29316 * 1
3 3 Si 1.86800 * 120.00393 * 2 1
4 4 H 1.48498 * 109.47295 * 240.00744 * 3 2 1
5 5 H 1.48503 * 109.46848 * 0.02562 * 3 2 1
6 6 H 1.48500 * 109.47035 * 120.00143 * 3 2 1
7 7 C 1.46790 * 119.99716 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99451 * 180.26806 * 7 2 1
9 9 N 1.33324 * 120.00017 * 359.97438 * 7 2 1
10 10 C 1.34777 * 119.99917 * 179.97438 * 9 7 2
11 11 O 1.21489 * 119.99783 * 0.02562 * 10 9 7
12 12 C 1.47606 * 120.00067 * 179.97438 * 10 9 7
13 13 C 1.40102 * 120.57648 * 359.97438 * 12 10 9
14 14 C 1.38319 * 118.29601 * 179.97438 * 13 12 10
15 15 N 1.48021 * 120.32206 * 179.97438 * 14 13 12
16 16 O 1.31701 * 119.99905 * 0.02562 * 15 14 13
17 17 O 1.31698 * 119.99833 * 179.97438 * 15 14 13
18 18 C 1.38374 * 119.35487 * 0.02562 * 14 13 12
19 19 N 1.31933 * 121.12078 * 0.02562 * 18 14 13
20 20 C 1.31810 * 121.86924 * 359.72108 * 19 18 14
21 21 Cl 1.73597 * 119.74410 * 180.27107 * 20 19 18
22 22 H 0.96996 * 119.99575 * 359.97438 * 1 2 3
23 23 H 0.96999 * 120.00036 * 359.97438 * 9 7 2
24 24 H 1.08007 * 120.85187 * 359.95675 * 13 12 10
25 25 H 1.07993 * 119.43778 * 180.02562 * 18 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.2932 0.0000 0.0000
3 14 2.2273 1.6177 0.0000
4 1 3.0809 1.6964 -1.2126
5 1 1.2623 2.7464 0.0006
6 1 3.0810 1.6962 1.2125
7 6 2.0270 -1.2713 -0.0006
8 1 3.1070 -1.2712 0.0038
9 7 1.3604 -2.4259 -0.0006
10 6 2.0342 -3.5931 -0.0016
11 8 3.2491 -3.5931 -0.0021
12 6 1.2962 -4.8714 -0.0010
13 6 -0.1048 -4.8854 0.0011
14 6 -0.7482 -6.1099 0.0010
15 7 -2.2269 -6.1771 0.0038
16 8 -2.9365 -5.0676 0.0059
17 8 -2.8329 -7.3463 0.0032
18 6 0.0039 -7.2714 -0.0006
19 7 1.3226 -7.2299 -0.0016
20 6 1.9829 -6.0891 -0.0065
21 17 3.7189 -6.0989 -0.0147
22 1 -0.4849 0.8400 0.0004
23 1 0.3904 -2.4258 0.0002
24 1 -0.6680 -3.9638 0.0031
25 1 -0.4970 -8.2281 -0.0011
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000226553387.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:33:51
Heat of formation + Delta-G solvation = 33.719351 kcal
Electronic energy + Delta-G solvation = -17712.094034 eV
Core-core repulsion = 14336.066022 eV
Total energy + Delta-G solvation = -3376.028013 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 271.019 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-40.78300 -38.75067 -38.10213 -36.35845 -34.57907 -34.39472 -33.10619 -32.18101
-31.52236 -26.80948 -25.76699 -24.27237 -22.80020 -20.36899 -19.09772 -18.45253
-18.01387 -17.30015 -16.51346 -16.06559 -16.03686 -15.30022 -14.67184 -14.31250
-13.88643 -13.42565 -13.36953 -12.81139 -12.36748 -11.63388 -11.53920 -11.32961
-11.23856 -11.00706 -10.90693 -10.70752 -10.62546 -10.34420 -10.14934 -10.02855
-9.16274 -8.86670 -8.46914 -7.35649 -4.07396 -0.73566 0.47062 1.00245
1.07541 1.99473 2.75140 2.87230 2.88423 3.04401 3.58975 3.85988
4.07776 4.22468 4.33364 4.57876 4.69825 4.77558 5.22771 5.46372
5.63397 5.82667 6.08406 6.50383 6.78667 7.27767 7.39863 7.80637
8.52020 8.81568 9.61773 9.77299
Molecular weight = 271.02amu
Principal moments of inertia in cm(-1)
A = 0.016873 B = 0.006577 C = 0.004740
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1659.094557 B = 4256.057114 C = 5905.303674
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.812 5.812
2 C 0.032 3.968
3 Si 0.947 3.053
4 H -0.261 1.261
5 H -0.275 1.275
6 H -0.261 1.261
7 C -0.286 4.286
8 H 0.128 0.872
9 N -0.493 5.493
10 C 0.411 3.589
11 O -0.584 6.584
12 C -0.120 4.120
13 C -0.015 4.015
14 C -0.049 4.049
15 N -0.010 5.010
16 O -0.166 6.166
17 O -0.174 6.174
18 C 0.148 3.852
19 N -0.459 5.459
20 C 0.224 3.776
21 Cl 0.031 6.969
22 H 0.298 0.702
23 H 0.391 0.609
24 H 0.168 0.832
25 H 0.186 0.814
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.546 -5.186 -0.014 5.215
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.442 5.442
2 C -0.185 4.185
3 Si 0.771 3.229
4 H -0.185 1.185
5 H -0.200 1.200
6 H -0.185 1.185
7 C -0.418 4.418
8 H 0.146 0.854
9 N -0.119 5.119
10 C 0.204 3.796
11 O -0.472 6.472
12 C -0.130 4.130
13 C -0.043 4.043
14 C -0.139 4.139
15 N 0.469 4.531
16 O -0.360 6.360
17 O -0.367 6.367
18 C -0.013 4.013
19 N -0.171 5.171
20 C 0.056 3.944
21 Cl 0.060 6.940
22 H 0.110 0.890
23 H 0.225 0.775
24 H 0.186 0.814
25 H 0.203 0.797
Dipole moment (debyes) X Y Z Total
from point charges 1.354 -5.666 -0.012 5.826
hybrid contribution -1.261 1.438 0.006 1.912
sum 0.093 -4.229 -0.006 4.230
Atomic orbital electron populations
1.68627 1.08201 1.31927 1.35469 1.27291 0.95260 1.01315 0.94649
0.85619 0.79301 0.77519 0.80499 1.18516 1.20008 1.18529 1.21221
0.94586 0.81526 1.44452 0.85418 1.41226 1.09803 1.05602 1.55307
1.16720 0.87673 0.81818 0.93374 1.90692 1.11473 1.85015 1.60057
1.20900 0.91343 0.96852 1.03903 1.21669 0.93721 0.97509 0.91376
1.21380 0.77638 0.97898 1.16949 1.50300 1.04128 1.02747 0.95895
1.96311 1.65492 1.19165 1.55035 1.96249 1.73971 1.10961 1.55518
1.22490 0.87856 0.97305 0.93698 1.67467 1.07367 1.28037 1.14217
1.22089 0.89838 0.88315 0.94154 1.98455 1.02303 1.98330 1.94873
0.88958 0.77466 0.81446 0.79731
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 45.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.81 -17.79 13.09 56.00 0.73 -17.06 15
2 C 0.03 0.70 5.69 -15.16 -0.09 0.61 15
3 Si 0.95 16.86 29.65 -169.99 -5.04 11.82 15
4 H -0.26 -4.66 7.11 56.52 0.40 -4.26 15
5 H -0.28 -4.74 7.11 56.52 0.40 -4.34 15
6 H -0.26 -4.66 7.11 56.52 0.40 -4.26 15
7 C -0.29 -6.68 9.92 -13.45 -0.13 -6.82 15
8 H 0.13 3.11 7.19 -52.49 -0.38 2.74 15
9 N -0.49 -10.94 5.12 -10.64 -0.05 -10.99 15
10 C 0.41 9.07 7.70 -12.44 -0.10 8.97 15
11 O -0.58 -14.32 13.52 5.38 0.07 -14.24 15
12 C -0.12 -2.26 5.89 -104.79 -0.62 -2.88 15
13 C -0.01 -0.25 9.16 -38.85 -0.36 -0.60 15
14 C -0.05 -0.78 6.90 -79.87 -0.55 -1.33 15
15 N -0.01 -0.16 4.98 34.00 0.17 0.01 15
16 O -0.17 -2.97 19.22 -31.57 -0.61 -3.57 15
17 O -0.17 -2.85 19.17 -31.57 -0.61 -3.45 15
18 C 0.15 2.14 10.73 -17.46 -0.19 1.95 15
19 N -0.46 -7.43 10.33 -9.99 -0.10 -7.53 15
20 C 0.22 4.03 7.32 -16.97 -0.12 3.90 15
21 Cl 0.03 0.56 26.20 -51.86 -1.36 -0.80 15
22 H 0.30 5.98 8.26 -40.82 -0.34 5.65 15
23 H 0.39 8.15 6.08 -40.82 -0.25 7.91 15
24 H 0.17 2.71 6.12 -52.48 -0.32 2.38 15
25 H 0.19 2.13 7.57 -52.49 -0.40 1.73 15
LS Contribution 261.15 15.07 3.94 3.94
Total: -1.00 -25.06 261.15 -5.49 -30.54
By element:
Atomic # 1 Polarization: 8.02 SS G_CDS: -0.48 Total: 7.54 kcal
Atomic # 6 Polarization: 5.96 SS G_CDS: -2.15 Total: 3.81 kcal
Atomic # 7 Polarization: -36.32 SS G_CDS: 0.74 Total: -35.58 kcal
Atomic # 8 Polarization: -20.13 SS G_CDS: -1.14 Total: -21.27 kcal
Atomic # 14 Polarization: 16.86 SS G_CDS: -5.04 Total: 11.82 kcal
Atomic # 17 Polarization: 0.56 SS G_CDS: -1.36 Total: -0.80 kcal
Total LS contribution 3.94 Total: 3.94 kcal
Total: -25.06 -5.49 -30.54 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000226553387.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.264 kcal
(2) G-P(sol) polarization free energy of solvation -25.059 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.205 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.486 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.544 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.719 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds