Wall clock time and date at job start Mon Mar 30 2020 05:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29316 * 1 3 3 Si 1.86800 * 120.00393 * 2 1 4 4 H 1.48498 * 109.47295 * 240.00744 * 3 2 1 5 5 H 1.48503 * 109.46848 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47035 * 120.00143 * 3 2 1 7 7 C 1.46790 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99451 * 180.26806 * 7 2 1 9 9 N 1.33324 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99917 * 179.97438 * 9 7 2 11 11 O 1.21489 * 119.99783 * 0.02562 * 10 9 7 12 12 C 1.47606 * 120.00067 * 179.97438 * 10 9 7 13 13 C 1.40102 * 120.57648 * 359.97438 * 12 10 9 14 14 C 1.38319 * 118.29601 * 179.97438 * 13 12 10 15 15 N 1.48021 * 120.32206 * 179.97438 * 14 13 12 16 16 O 1.31701 * 119.99905 * 0.02562 * 15 14 13 17 17 O 1.31698 * 119.99833 * 179.97438 * 15 14 13 18 18 C 1.38374 * 119.35487 * 0.02562 * 14 13 12 19 19 N 1.31933 * 121.12078 * 0.02562 * 18 14 13 20 20 C 1.31810 * 121.86924 * 359.72108 * 19 18 14 21 21 Cl 1.73597 * 119.74410 * 180.27107 * 20 19 18 22 22 H 0.96996 * 119.99575 * 359.97438 * 1 2 3 23 23 H 0.96999 * 120.00036 * 359.97438 * 9 7 2 24 24 H 1.08007 * 120.85187 * 359.95675 * 13 12 10 25 25 H 1.07993 * 119.43778 * 180.02562 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2932 0.0000 0.0000 3 14 2.2273 1.6177 0.0000 4 1 3.0809 1.6964 -1.2126 5 1 1.2623 2.7464 0.0006 6 1 3.0810 1.6962 1.2125 7 6 2.0270 -1.2713 -0.0006 8 1 3.1070 -1.2712 0.0038 9 7 1.3604 -2.4259 -0.0006 10 6 2.0342 -3.5931 -0.0016 11 8 3.2491 -3.5931 -0.0021 12 6 1.2962 -4.8714 -0.0010 13 6 -0.1048 -4.8854 0.0011 14 6 -0.7482 -6.1099 0.0010 15 7 -2.2269 -6.1771 0.0038 16 8 -2.9365 -5.0676 0.0059 17 8 -2.8329 -7.3463 0.0032 18 6 0.0039 -7.2714 -0.0006 19 7 1.3226 -7.2299 -0.0016 20 6 1.9829 -6.0891 -0.0065 21 17 3.7189 -6.0989 -0.0147 22 1 -0.4849 0.8400 0.0004 23 1 0.3904 -2.4258 0.0002 24 1 -0.6680 -3.9638 0.0031 25 1 -0.4970 -8.2281 -0.0011 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226553387.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:50 Heat of formation + Delta-G solvation = 17.908806 kcal Electronic energy + Delta-G solvation = -17712.779631 eV Core-core repulsion = 14336.066022 eV Total energy + Delta-G solvation = -3376.713609 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 271.019 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.28559 -40.26956 -39.63607 -37.86743 -36.22556 -35.77211 -34.60850 -33.75272 -33.02720 -28.22983 -27.34260 -25.75937 -24.26478 -21.93550 -20.71160 -19.91765 -19.38782 -18.73474 -18.01774 -17.60263 -17.41358 -16.85516 -16.20413 -15.86631 -15.40501 -15.06561 -14.77118 -14.39167 -13.87434 -13.09612 -13.01418 -12.74074 -12.62784 -12.55076 -12.42463 -12.10715 -11.99088 -11.82132 -11.61998 -11.58230 -10.68081 -10.48063 -10.23214 -8.87827 -5.86447 -2.11819 -0.91428 -0.43528 -0.31828 0.49625 1.30090 1.41433 1.50195 1.61583 2.15168 2.26727 2.53584 2.84140 2.84659 3.04247 3.08975 3.28845 3.74569 4.09054 4.19823 4.28268 4.67420 4.97717 5.39159 5.64542 5.89089 6.23850 6.88897 7.21774 7.94886 8.24953 Molecular weight = 271.02amu Principal moments of inertia in cm(-1) A = 0.016873 B = 0.006577 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.094557 B = 4256.057114 C = 5905.303674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.010 3.990 3 Si 1.003 2.997 4 H -0.264 1.264 5 H -0.263 1.263 6 H -0.265 1.265 7 C -0.358 4.358 8 H 0.101 0.899 9 N -0.502 5.502 10 C 0.414 3.586 11 O -0.610 6.610 12 C -0.134 4.134 13 C 0.007 3.993 14 C -0.056 4.056 15 N -0.009 5.009 16 O -0.213 6.213 17 O -0.126 6.126 18 C 0.201 3.799 19 N -0.460 5.460 20 C 0.237 3.763 21 Cl 0.033 6.967 22 H 0.302 0.698 23 H 0.393 0.607 24 H 0.171 0.829 25 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.661 -8.325 -0.015 8.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.203 4.203 3 Si 0.824 3.176 4 H -0.189 1.189 5 H -0.187 1.187 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.119 0.881 9 N -0.131 5.131 10 C 0.206 3.794 11 O -0.500 6.500 12 C -0.142 4.142 13 C -0.021 4.021 14 C -0.145 4.145 15 N 0.471 4.529 16 O -0.394 6.394 17 O -0.333 6.333 18 C 0.040 3.960 19 N -0.172 5.172 20 C 0.072 3.928 21 Cl 0.063 6.937 22 H 0.114 0.886 23 H 0.228 0.772 24 H 0.189 0.811 25 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 0.228 -8.684 -0.014 8.687 hybrid contribution -1.028 1.552 0.006 1.862 sum -0.800 -7.132 -0.008 7.177 Atomic orbital electron populations 1.68644 1.08891 1.32546 1.37907 1.27863 0.95875 1.03005 0.93568 0.84837 0.78227 0.74679 0.79838 1.18910 1.18669 1.18925 1.20869 0.93638 0.82857 1.51447 0.88086 1.40987 1.09583 1.05283 1.57222 1.17191 0.87596 0.82763 0.91868 1.90651 1.12963 1.85974 1.60374 1.20705 0.92146 0.95840 1.05511 1.21693 0.92883 0.98648 0.88833 1.21415 0.77752 0.97821 1.17553 1.50303 1.04085 1.02754 0.95798 1.96366 1.65533 1.19226 1.58283 1.96232 1.74015 1.10788 1.52289 1.23395 0.87048 0.98479 0.87114 1.67720 1.07981 1.26462 1.15019 1.22306 0.90241 0.88594 0.91653 1.98473 1.02297 1.98337 1.94598 0.88606 0.77229 0.81145 0.75093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -39.07 13.09 23.26 0.30 -38.77 15 2 C 0.01 0.48 5.69 87.30 0.50 0.98 15 3 Si 1.00 36.32 29.65 68.60 2.03 38.36 15 4 H -0.26 -9.57 7.11 99.48 0.71 -8.86 15 5 H -0.26 -8.80 7.11 99.48 0.71 -8.09 15 6 H -0.26 -9.57 7.11 99.48 0.71 -8.87 15 7 C -0.36 -17.98 9.92 86.70 0.86 -17.12 15 8 H 0.10 5.40 7.19 -2.91 -0.02 5.38 15 9 N -0.50 -23.51 5.12 -305.88 -1.57 -25.08 15 10 C 0.41 18.74 7.70 86.72 0.67 19.40 15 11 O -0.61 -30.79 13.52 -3.68 -0.05 -30.84 15 12 C -0.13 -4.85 5.89 -19.97 -0.12 -4.97 15 13 C 0.01 0.23 9.16 22.74 0.21 0.44 15 14 C -0.06 -1.54 6.90 36.43 0.25 -1.29 15 15 N -0.01 -0.26 4.98 -46.34 -0.23 -0.49 15 16 O -0.21 -7.25 19.22 3.51 0.07 -7.19 15 17 O -0.13 -3.40 19.17 3.52 0.07 -3.33 15 18 C 0.20 4.60 10.73 84.71 0.91 5.51 15 19 N -0.46 -12.70 10.33 -185.51 -1.92 -14.61 15 20 C 0.24 7.92 7.32 85.08 0.62 8.54 15 21 Cl 0.03 1.16 26.20 -2.72 -0.07 1.09 15 22 H 0.30 12.65 8.26 -92.71 -0.77 11.88 15 23 H 0.39 17.28 6.08 -92.71 -0.56 16.72 15 24 H 0.17 5.42 6.12 -2.91 -0.02 5.40 15 25 H 0.23 3.37 7.57 -2.91 -0.02 3.35 15 Total: -1.00 -55.72 261.15 3.27 -52.46 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.73 Total: 16.92 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 3.90 Total: 11.50 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -3.41 Total: -78.96 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: 0.09 Total: -41.36 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.36 kcal Atomic # 17 Polarization: 1.16 SS G_CDS: -0.07 Total: 1.09 kcal Total: -55.72 3.27 -52.46 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226553387.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.366 kcal (2) G-P(sol) polarization free energy of solvation -55.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds