Wall clock time and date at job start Mon Mar 30 2020 05:33:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.29316 * 1
3 3 Si 1.86800 * 120.00393 * 2 1
4 4 H 1.48498 * 109.47295 * 240.00744 * 3 2 1
5 5 H 1.48503 * 109.46848 * 0.02562 * 3 2 1
6 6 H 1.48500 * 109.47035 * 120.00143 * 3 2 1
7 7 C 1.46790 * 119.99716 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99451 * 180.26806 * 7 2 1
9 9 N 1.33324 * 120.00017 * 359.97438 * 7 2 1
10 10 C 1.34777 * 119.99917 * 179.97438 * 9 7 2
11 11 O 1.21489 * 119.99783 * 0.02562 * 10 9 7
12 12 C 1.47606 * 120.00067 * 179.97438 * 10 9 7
13 13 C 1.40102 * 120.57648 * 359.97438 * 12 10 9
14 14 C 1.38319 * 118.29601 * 179.97438 * 13 12 10
15 15 N 1.48021 * 120.32206 * 179.97438 * 14 13 12
16 16 O 1.31701 * 119.99905 * 0.02562 * 15 14 13
17 17 O 1.31698 * 119.99833 * 179.97438 * 15 14 13
18 18 C 1.38374 * 119.35487 * 0.02562 * 14 13 12
19 19 N 1.31933 * 121.12078 * 0.02562 * 18 14 13
20 20 C 1.31810 * 121.86924 * 359.72108 * 19 18 14
21 21 Cl 1.73597 * 119.74410 * 180.27107 * 20 19 18
22 22 H 0.96996 * 119.99575 * 359.97438 * 1 2 3
23 23 H 0.96999 * 120.00036 * 359.97438 * 9 7 2
24 24 H 1.08007 * 120.85187 * 359.95675 * 13 12 10
25 25 H 1.07993 * 119.43778 * 180.02562 * 18 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.2932 0.0000 0.0000
3 14 2.2273 1.6177 0.0000
4 1 3.0809 1.6964 -1.2126
5 1 1.2623 2.7464 0.0006
6 1 3.0810 1.6962 1.2125
7 6 2.0270 -1.2713 -0.0006
8 1 3.1070 -1.2712 0.0038
9 7 1.3604 -2.4259 -0.0006
10 6 2.0342 -3.5931 -0.0016
11 8 3.2491 -3.5931 -0.0021
12 6 1.2962 -4.8714 -0.0010
13 6 -0.1048 -4.8854 0.0011
14 6 -0.7482 -6.1099 0.0010
15 7 -2.2269 -6.1771 0.0038
16 8 -2.9365 -5.0676 0.0059
17 8 -2.8329 -7.3463 0.0032
18 6 0.0039 -7.2714 -0.0006
19 7 1.3226 -7.2299 -0.0016
20 6 1.9829 -6.0891 -0.0065
21 17 3.7189 -6.0989 -0.0147
22 1 -0.4849 0.8400 0.0004
23 1 0.3904 -2.4258 0.0002
24 1 -0.6680 -3.9638 0.0031
25 1 -0.4970 -8.2281 -0.0011
RHF calculation, no. of doubly occupied orbitals= 45
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000226553387.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:33:50
Heat of formation + Delta-G solvation = 17.908806 kcal
Electronic energy + Delta-G solvation = -17712.779631 eV
Core-core repulsion = 14336.066022 eV
Total energy + Delta-G solvation = -3376.713609 eV
No. of doubly occupied orbitals = 45
Molecular weight
(most abundant/longest-lived isotopes) = 271.019 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-42.28559 -40.26956 -39.63607 -37.86743 -36.22556 -35.77211 -34.60850 -33.75272
-33.02720 -28.22983 -27.34260 -25.75937 -24.26478 -21.93550 -20.71160 -19.91765
-19.38782 -18.73474 -18.01774 -17.60263 -17.41358 -16.85516 -16.20413 -15.86631
-15.40501 -15.06561 -14.77118 -14.39167 -13.87434 -13.09612 -13.01418 -12.74074
-12.62784 -12.55076 -12.42463 -12.10715 -11.99088 -11.82132 -11.61998 -11.58230
-10.68081 -10.48063 -10.23214 -8.87827 -5.86447 -2.11819 -0.91428 -0.43528
-0.31828 0.49625 1.30090 1.41433 1.50195 1.61583 2.15168 2.26727
2.53584 2.84140 2.84659 3.04247 3.08975 3.28845 3.74569 4.09054
4.19823 4.28268 4.67420 4.97717 5.39159 5.64542 5.89089 6.23850
6.88897 7.21774 7.94886 8.24953
Molecular weight = 271.02amu
Principal moments of inertia in cm(-1)
A = 0.016873 B = 0.006577 C = 0.004740
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1659.094557 B = 4256.057114 C = 5905.303674
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.848 5.848
2 C 0.010 3.990
3 Si 1.003 2.997
4 H -0.264 1.264
5 H -0.263 1.263
6 H -0.265 1.265
7 C -0.358 4.358
8 H 0.101 0.899
9 N -0.502 5.502
10 C 0.414 3.586
11 O -0.610 6.610
12 C -0.134 4.134
13 C 0.007 3.993
14 C -0.056 4.056
15 N -0.009 5.009
16 O -0.213 6.213
17 O -0.126 6.126
18 C 0.201 3.799
19 N -0.460 5.460
20 C 0.237 3.763
21 Cl 0.033 6.967
22 H 0.302 0.698
23 H 0.393 0.607
24 H 0.171 0.829
25 H 0.233 0.767
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.661 -8.325 -0.015 8.489
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.480 5.480
2 C -0.203 4.203
3 Si 0.824 3.176
4 H -0.189 1.189
5 H -0.187 1.187
6 H -0.189 1.189
7 C -0.488 4.488
8 H 0.119 0.881
9 N -0.131 5.131
10 C 0.206 3.794
11 O -0.500 6.500
12 C -0.142 4.142
13 C -0.021 4.021
14 C -0.145 4.145
15 N 0.471 4.529
16 O -0.394 6.394
17 O -0.333 6.333
18 C 0.040 3.960
19 N -0.172 5.172
20 C 0.072 3.928
21 Cl 0.063 6.937
22 H 0.114 0.886
23 H 0.228 0.772
24 H 0.189 0.811
25 H 0.249 0.751
Dipole moment (debyes) X Y Z Total
from point charges 0.228 -8.684 -0.014 8.687
hybrid contribution -1.028 1.552 0.006 1.862
sum -0.800 -7.132 -0.008 7.177
Atomic orbital electron populations
1.68644 1.08891 1.32546 1.37907 1.27863 0.95875 1.03005 0.93568
0.84837 0.78227 0.74679 0.79838 1.18910 1.18669 1.18925 1.20869
0.93638 0.82857 1.51447 0.88086 1.40987 1.09583 1.05283 1.57222
1.17191 0.87596 0.82763 0.91868 1.90651 1.12963 1.85974 1.60374
1.20705 0.92146 0.95840 1.05511 1.21693 0.92883 0.98648 0.88833
1.21415 0.77752 0.97821 1.17553 1.50303 1.04085 1.02754 0.95798
1.96366 1.65533 1.19226 1.58283 1.96232 1.74015 1.10788 1.52289
1.23395 0.87048 0.98479 0.87114 1.67720 1.07981 1.26462 1.15019
1.22306 0.90241 0.88594 0.91653 1.98473 1.02297 1.98337 1.94598
0.88606 0.77229 0.81145 0.75093
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 19.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.85 -39.07 13.09 23.26 0.30 -38.77 15
2 C 0.01 0.48 5.69 87.30 0.50 0.98 15
3 Si 1.00 36.32 29.65 68.60 2.03 38.36 15
4 H -0.26 -9.57 7.11 99.48 0.71 -8.86 15
5 H -0.26 -8.80 7.11 99.48 0.71 -8.09 15
6 H -0.26 -9.57 7.11 99.48 0.71 -8.87 15
7 C -0.36 -17.98 9.92 86.70 0.86 -17.12 15
8 H 0.10 5.40 7.19 -2.91 -0.02 5.38 15
9 N -0.50 -23.51 5.12 -305.88 -1.57 -25.08 15
10 C 0.41 18.74 7.70 86.72 0.67 19.40 15
11 O -0.61 -30.79 13.52 -3.68 -0.05 -30.84 15
12 C -0.13 -4.85 5.89 -19.97 -0.12 -4.97 15
13 C 0.01 0.23 9.16 22.74 0.21 0.44 15
14 C -0.06 -1.54 6.90 36.43 0.25 -1.29 15
15 N -0.01 -0.26 4.98 -46.34 -0.23 -0.49 15
16 O -0.21 -7.25 19.22 3.51 0.07 -7.19 15
17 O -0.13 -3.40 19.17 3.52 0.07 -3.33 15
18 C 0.20 4.60 10.73 84.71 0.91 5.51 15
19 N -0.46 -12.70 10.33 -185.51 -1.92 -14.61 15
20 C 0.24 7.92 7.32 85.08 0.62 8.54 15
21 Cl 0.03 1.16 26.20 -2.72 -0.07 1.09 15
22 H 0.30 12.65 8.26 -92.71 -0.77 11.88 15
23 H 0.39 17.28 6.08 -92.71 -0.56 16.72 15
24 H 0.17 5.42 6.12 -2.91 -0.02 5.40 15
25 H 0.23 3.37 7.57 -2.91 -0.02 3.35 15
Total: -1.00 -55.72 261.15 3.27 -52.46
By element:
Atomic # 1 Polarization: 16.19 SS G_CDS: 0.73 Total: 16.92 kcal
Atomic # 6 Polarization: 7.60 SS G_CDS: 3.90 Total: 11.50 kcal
Atomic # 7 Polarization: -75.55 SS G_CDS: -3.41 Total: -78.96 kcal
Atomic # 8 Polarization: -41.45 SS G_CDS: 0.09 Total: -41.36 kcal
Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.36 kcal
Atomic # 17 Polarization: 1.16 SS G_CDS: -0.07 Total: 1.09 kcal
Total: -55.72 3.27 -52.46 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000226553387.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.366 kcal
(2) G-P(sol) polarization free energy of solvation -55.723 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.643 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.457 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.909 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds