Wall clock time and date at job start Mon Mar 30 2020 05:13:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.42891 * 114.00111 * 2 1
4 4 C 1.53002 * 109.47072 * 179.97438 * 3 2 1
5 5 N 1.46902 * 109.47444 * 63.44957 * 4 3 2
6 6 C 1.46900 * 110.99962 * 199.35386 * 5 4 3
7 7 C 1.50697 * 109.47273 * 66.46365 * 6 5 4
8 8 H 1.07994 * 120.00131 * 359.97438 * 7 6 5
9 9 C 1.37879 * 119.99765 * 179.97438 * 7 6 5
10 10 N 1.31514 * 119.99892 * 359.97438 * 9 7 6
11 11 Si 1.86799 * 120.00005 * 179.97438 * 9 7 6
12 12 H 1.48496 * 109.47356 * 180.02562 * 11 9 7
13 13 H 1.48497 * 109.47112 * 300.00210 * 11 9 7
14 14 H 1.48502 * 109.46799 * 59.99888 * 11 9 7
15 15 C 1.46892 * 110.99904 * 75.39571 * 5 4 3
16 16 H 1.09003 * 109.62942 * 162.11119 * 15 5 4
17 17 C 1.54237 * 109.63093 * 41.72035 * 15 5 4
18 18 C 1.45545 * 112.40660 * 160.30349 * 17 15 5
19 19 C 1.54237 * 112.40958 * 61.93601 * 18 17 15
20 20 C 1.50474 * 108.52349 * 280.01564 * 19 18 17
21 21 C 1.54064 * 112.49801 * 94.14729 * 20 19 18
22 22 C 1.50481 * 109.63027 * 282.69010 * 15 5 4
23 23 H 1.09001 * 108.87301 * 93.08302 * 22 15 5
24 24 N 1.46898 * 108.87365 * 334.64255 * 22 15 5
25 25 H 1.08992 * 109.47356 * 300.00353 * 1 2 3
26 26 H 1.09003 * 109.46986 * 60.00078 * 1 2 3
27 27 H 1.09002 * 109.47267 * 179.97438 * 1 2 3
28 28 H 1.09000 * 109.47689 * 59.99999 * 3 2 1
29 29 H 1.09001 * 109.47313 * 299.99675 * 3 2 1
30 30 H 1.08998 * 109.47254 * 303.44442 * 4 3 2
31 31 H 1.09007 * 109.47306 * 183.44789 * 4 3 2
32 32 H 1.08998 * 109.46724 * 306.46047 * 6 5 4
33 33 H 1.09004 * 109.46798 * 186.46622 * 6 5 4
34 34 H 0.96998 * 119.99727 * 180.02562 * 10 9 7
35 35 H 1.08999 * 108.89684 * 281.05239 * 17 15 5
36 36 H 1.08993 * 108.89490 * 39.64224 * 17 15 5
37 37 H 1.08998 * 108.89710 * 182.69553 * 18 17 15
38 38 H 1.09005 * 108.89250 * 301.27902 * 18 17 15
39 39 H 1.08994 * 109.62808 * 39.72258 * 19 18 17
40 40 H 1.08996 * 109.63278 * 160.11395 * 19 18 17
41 41 H 1.08999 * 108.88130 * 214.92725 * 20 19 18
42 42 H 1.09001 * 108.87681 * 333.47398 * 20 19 18
43 43 H 1.09001 * 108.81530 * 79.14477 * 21 20 19
44 44 H 1.09000 * 108.81544 * 197.53644 * 21 20 19
45 45 H 1.00903 * 110.99374 * 184.70398 * 24 22 15
46 46 H 1.00900 * 111.00465 * 308.65620 * 24 22 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5354 1.1845 0.0006
5 7 3.9753 0.5285 -1.2380
6 6 5.3318 -0.0160 -1.0923
7 6 5.3171 -1.1393 -0.0878
8 1 4.3926 -1.4204 0.3944
9 6 6.4840 -1.8081 0.2155
10 7 7.6098 -1.4661 -0.3722
11 14 6.4660 -3.2001 1.4611
12 1 7.8373 -3.7505 1.6082
13 1 5.9966 -2.6849 2.7723
14 1 5.5498 -4.2711 0.9932
15 6 3.8979 1.4510 -2.3784
16 1 4.5077 1.0716 -3.1984
17 6 4.4083 2.8433 -1.9542
18 6 4.7921 3.6642 -3.0931
19 6 3.6075 3.9481 -4.0391
20 6 3.3979 2.7442 -4.9172
21 6 2.3417 1.7770 -4.3493
22 6 2.4672 1.5825 -2.8261
23 1 2.0175 2.4385 -2.3230
24 7 1.7350 0.3690 -2.4399
25 1 -0.3633 0.5138 0.8899
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3634 -1.0277 -0.0005
28 1 1.6886 1.8464 0.8900
29 1 1.6886 1.8463 -0.8900
30 1 3.8526 0.5914 0.8584
31 1 3.9787 2.1785 0.0625
32 1 6.0038 0.7703 -0.7483
33 1 5.6771 -0.3936 -2.0548
34 1 8.4306 -1.9369 -0.1591
35 1 3.6208 3.3543 -1.4003
36 1 5.2735 2.7187 -1.3031
37 1 5.1872 4.6122 -2.7278
38 1 5.5731 3.1489 -3.6524
39 1 2.7077 4.1349 -3.4532
40 1 3.8311 4.8193 -4.6548
41 1 3.0757 3.0787 -5.9033
42 1 4.3437 2.2118 -5.0175
43 1 1.3495 2.1691 -4.5730
44 1 2.4542 0.8083 -4.8362
45 1 0.7897 0.3896 -2.7922
46 1 2.2189 -0.4599 -2.7513
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000250172493.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:13:41
Heat of formation + Delta-G solvation = -20.013300 kcal
Electronic energy + Delta-G solvation = -23372.479113 eV
Core-core repulsion = 20298.003297 eV
Total energy + Delta-G solvation = -3074.475816 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-39.78091 -36.85509 -35.41621 -33.98214 -32.54213 -30.91584 -29.19366 -28.22644
-26.15486 -25.47895 -24.08892 -22.97202 -22.04634 -20.89929 -19.54407 -18.77919
-16.43410 -15.78962 -15.57589 -15.24733 -15.13392 -14.46540 -14.38702 -14.00728
-13.91664 -13.71389 -13.35067 -13.16173 -12.78422 -12.47203 -11.96420 -11.94304
-11.64277 -11.45989 -11.32991 -10.98145 -10.84921 -10.72437 -10.60943 -10.49551
-10.44096 -10.20798 -10.12483 -10.00269 -9.67566 -9.52195 -9.03970 -8.52183
-8.30354 -7.78776 -6.87331 -5.89977 -3.88963 3.43204 3.45833 3.50963
4.52671 4.66830 4.74958 4.88517 4.91900 5.12104 5.32499 5.35165
5.41447 5.44471 5.48547 5.57741 5.71513 5.78626 5.79761 5.87057
5.95209 6.05627 6.10241 6.15742 6.18634 6.19006 6.29841 6.30506
6.31369 6.42758 6.45245 6.49155 6.55575 6.63156 6.73408 7.00419
7.44440 7.50395 7.78760 8.01623 8.15235 8.18414 8.31542 8.45874
8.77289 9.22469 9.74738 11.20825
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.016873 B = 0.006954 C = 0.005545
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1659.103147 B = 4025.248752 C = 5048.301997
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.043 3.957
2 O -0.337 6.337
3 C 0.081 3.919
4 C 0.060 3.940
5 N -0.495 5.495
6 C 0.194 3.806
7 C -0.496 4.496
8 H 0.068 0.932
9 C 0.052 3.948
10 N -0.904 5.904
11 Si 0.896 3.104
12 H -0.291 1.291
13 H -0.278 1.278
14 H -0.277 1.277
15 C 0.090 3.910
16 H 0.071 0.929
17 C -0.148 4.148
18 C -0.112 4.112
19 C -0.115 4.115
20 C -0.115 4.115
21 C -0.149 4.149
22 C 0.102 3.898
23 H 0.066 0.934
24 N -0.800 5.800
25 H 0.014 0.986
26 H 0.030 0.970
27 H 0.068 0.932
28 H 0.009 0.991
29 H 0.058 0.942
30 H 0.083 0.917
31 H 0.034 0.966
32 H -0.015 1.015
33 H 0.024 0.976
34 H 0.259 0.741
35 H 0.056 0.944
36 H 0.065 0.935
37 H 0.052 0.948
38 H 0.059 0.941
39 H 0.062 0.938
40 H 0.056 0.944
41 H 0.051 0.949
42 H 0.062 0.938
43 H 0.051 0.949
44 H 0.056 0.944
45 H 0.312 0.688
46 H 0.350 0.650
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.638 9.870 -6.334 16.522
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 O -0.254 6.254
3 C 0.004 3.996
4 C -0.068 4.068
5 N -0.218 5.218
6 C 0.069 3.931
7 C -0.535 4.535
8 H 0.086 0.914
9 C -0.148 4.148
10 N -0.545 5.545
11 Si 0.725 3.275
12 H -0.217 1.217
13 H -0.204 1.204
14 H -0.203 1.203
15 C -0.020 4.020
16 H 0.089 0.911
17 C -0.188 4.188
18 C -0.150 4.150
19 C -0.152 4.152
20 C -0.154 4.154
21 C -0.189 4.189
22 C -0.011 4.011
23 H 0.084 0.916
24 N -0.328 5.328
25 H 0.033 0.967
26 H 0.048 0.952
27 H 0.086 0.914
28 H 0.027 0.973
29 H 0.076 0.924
30 H 0.102 0.898
31 H 0.052 0.948
32 H 0.003 0.997
33 H 0.042 0.958
34 H 0.068 0.932
35 H 0.074 0.926
36 H 0.084 0.916
37 H 0.070 0.930
38 H 0.078 0.922
39 H 0.080 0.920
40 H 0.075 0.925
41 H 0.069 0.931
42 H 0.081 0.919
43 H 0.070 0.930
44 H 0.075 0.925
45 H 0.123 0.877
46 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges -11.511 9.440 -5.648 15.922
hybrid contribution 0.427 0.053 -0.299 0.523
sum -11.084 9.493 -5.947 15.759
Atomic orbital electron populations
1.22433 0.84532 1.00763 0.97761 1.88088 1.16080 1.26739 1.94535
1.22573 0.94259 0.85508 0.97265 1.22042 0.92658 0.96992 0.95122
1.62078 1.27408 1.31172 1.01095 1.19723 0.82588 0.93787 0.97044
1.21222 0.94294 1.15617 1.22355 0.91399 1.24981 0.95554 0.97556
0.96708 1.69960 0.99056 1.41954 1.43487 0.86590 0.76561 0.82586
0.81808 1.21693 1.20421 1.20257 1.21484 0.94279 0.90374 0.95842
0.91091 1.21132 1.01523 0.97743 0.98372 1.20450 0.97811 0.99528
0.97246 1.21321 0.98768 0.97292 0.97865 1.21279 0.99684 0.96251
0.98143 1.22877 0.98359 0.99159 0.98530 1.21416 0.95015 0.94039
0.90624 0.91569 1.59161 1.03696 1.03818 1.66081 0.96717 0.95186
0.91373 0.97271 0.92378 0.89838 0.94809 0.99694 0.95787 0.93179
0.92564 0.91618 0.92960 0.92223 0.91972 0.92515 0.93067 0.91938
0.93029 0.92544 0.87695 0.83512
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.60 10.60 101.05 1.07 1.67 16
2 O -0.34 -6.15 8.94 -35.23 -0.32 -6.47 16
3 C 0.08 1.38 5.21 37.16 0.19 1.58 16
4 C 0.06 1.19 4.79 -3.82 -0.02 1.17 16
5 N -0.50 -10.24 3.30 -228.82 -0.75 -11.00 16
6 C 0.19 5.00 4.49 -4.98 -0.02 4.98 16
7 C -0.50 -14.10 8.24 -34.44 -0.28 -14.38 16
8 H 0.07 1.97 7.33 -52.49 -0.38 1.59 16
9 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16
10 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16
11 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16
12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
15 C 0.09 1.53 1.63 -68.33 -0.11 1.42 16
16 H 0.07 1.31 6.55 -51.93 -0.34 0.97 16
17 C -0.15 -2.29 3.21 -29.60 -0.09 -2.39 16
18 C -0.11 -1.48 5.26 -29.60 -0.16 -1.63 16
19 C -0.11 -1.29 5.61 -27.35 -0.15 -1.45 16
20 C -0.12 -1.33 5.32 -27.44 -0.15 -1.47 16
21 C -0.15 -1.77 5.34 -25.62 -0.14 -1.91 16
22 C 0.10 1.40 1.55 -68.42 -0.11 1.30 16
23 H 0.07 0.93 4.89 -51.93 -0.25 0.67 16
24 N -0.80 -11.49 4.00 -5.27 -0.02 -11.51 16
25 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16
26 H 0.03 0.37 7.34 -51.93 -0.38 -0.01 16
27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
28 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16
29 H 0.06 0.92 3.91 -51.93 -0.20 0.71 16
30 H 0.08 1.92 6.61 -51.93 -0.34 1.57 16
31 H 0.03 0.63 5.37 -51.92 -0.28 0.36 16
32 H -0.01 -0.41 7.33 -51.93 -0.38 -0.79 16
33 H 0.02 0.67 7.81 -51.93 -0.41 0.27 16
34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
35 H 0.06 0.83 6.68 -51.93 -0.35 0.48 16
36 H 0.07 1.19 6.57 -51.93 -0.34 0.84 16
37 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16
38 H 0.06 0.83 7.47 -51.93 -0.39 0.44 16
39 H 0.06 0.70 6.98 -51.93 -0.36 0.34 16
40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
42 H 0.06 0.79 6.63 -51.93 -0.34 0.45 16
43 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16
44 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16
45 H 0.31 3.81 8.39 -39.29 -0.33 3.48 16
46 H 0.35 5.73 8.66 -39.29 -0.34 5.39 16
LS Contribution 329.03 15.07 4.96 4.96
Total: -1.00 -29.49 329.03 -8.42 -37.91
By element:
Atomic # 1 Polarization: 12.94 SS G_CDS: -7.94 Total: 5.00 kcal
Atomic # 6 Polarization: -9.65 SS G_CDS: -0.06 Total: -9.71 kcal
Atomic # 7 Polarization: -48.97 SS G_CDS: -0.04 Total: -49.01 kcal
Atomic # 8 Polarization: -6.15 SS G_CDS: -0.32 Total: -6.47 kcal
Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal
Total LS contribution 4.96 Total: 4.96 kcal
Total: -29.49 -8.42 -37.91 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000250172493.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.895 kcal
(2) G-P(sol) polarization free energy of solvation -29.491 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.595 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.013 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds