Wall clock time and date at job start Mon Mar 30 2020 05:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42891 * 114.00111 * 2 1 4 4 C 1.53002 * 109.47072 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47444 * 63.44957 * 4 3 2 6 6 C 1.46900 * 110.99962 * 199.35386 * 5 4 3 7 7 C 1.50697 * 109.47273 * 66.46365 * 6 5 4 8 8 H 1.07994 * 120.00131 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99765 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99892 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00005 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47356 * 180.02562 * 11 9 7 13 13 H 1.48497 * 109.47112 * 300.00210 * 11 9 7 14 14 H 1.48502 * 109.46799 * 59.99888 * 11 9 7 15 15 C 1.46892 * 110.99904 * 75.39571 * 5 4 3 16 16 H 1.09003 * 109.62942 * 162.11119 * 15 5 4 17 17 C 1.54237 * 109.63093 * 41.72035 * 15 5 4 18 18 C 1.45545 * 112.40660 * 160.30349 * 17 15 5 19 19 C 1.54237 * 112.40958 * 61.93601 * 18 17 15 20 20 C 1.50474 * 108.52349 * 280.01564 * 19 18 17 21 21 C 1.54064 * 112.49801 * 94.14729 * 20 19 18 22 22 C 1.50481 * 109.63027 * 282.69010 * 15 5 4 23 23 H 1.09001 * 108.87301 * 93.08302 * 22 15 5 24 24 N 1.46898 * 108.87365 * 334.64255 * 22 15 5 25 25 H 1.08992 * 109.47356 * 300.00353 * 1 2 3 26 26 H 1.09003 * 109.46986 * 60.00078 * 1 2 3 27 27 H 1.09002 * 109.47267 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47689 * 59.99999 * 3 2 1 29 29 H 1.09001 * 109.47313 * 299.99675 * 3 2 1 30 30 H 1.08998 * 109.47254 * 303.44442 * 4 3 2 31 31 H 1.09007 * 109.47306 * 183.44789 * 4 3 2 32 32 H 1.08998 * 109.46724 * 306.46047 * 6 5 4 33 33 H 1.09004 * 109.46798 * 186.46622 * 6 5 4 34 34 H 0.96998 * 119.99727 * 180.02562 * 10 9 7 35 35 H 1.08999 * 108.89684 * 281.05239 * 17 15 5 36 36 H 1.08993 * 108.89490 * 39.64224 * 17 15 5 37 37 H 1.08998 * 108.89710 * 182.69553 * 18 17 15 38 38 H 1.09005 * 108.89250 * 301.27902 * 18 17 15 39 39 H 1.08994 * 109.62808 * 39.72258 * 19 18 17 40 40 H 1.08996 * 109.63278 * 160.11395 * 19 18 17 41 41 H 1.08999 * 108.88130 * 214.92725 * 20 19 18 42 42 H 1.09001 * 108.87681 * 333.47398 * 20 19 18 43 43 H 1.09001 * 108.81530 * 79.14477 * 21 20 19 44 44 H 1.09000 * 108.81544 * 197.53644 * 21 20 19 45 45 H 1.00903 * 110.99374 * 184.70398 * 24 22 15 46 46 H 1.00900 * 111.00465 * 308.65620 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 7 3.9753 0.5285 -1.2380 6 6 5.3318 -0.0160 -1.0923 7 6 5.3171 -1.1393 -0.0878 8 1 4.3926 -1.4204 0.3944 9 6 6.4840 -1.8081 0.2155 10 7 7.6098 -1.4661 -0.3722 11 14 6.4660 -3.2001 1.4611 12 1 7.8373 -3.7505 1.6082 13 1 5.9966 -2.6849 2.7723 14 1 5.5498 -4.2711 0.9932 15 6 3.8979 1.4510 -2.3784 16 1 4.5077 1.0716 -3.1984 17 6 4.4083 2.8433 -1.9542 18 6 4.7921 3.6642 -3.0931 19 6 3.6075 3.9481 -4.0391 20 6 3.3979 2.7442 -4.9172 21 6 2.3417 1.7770 -4.3493 22 6 2.4672 1.5825 -2.8261 23 1 2.0175 2.4385 -2.3230 24 7 1.7350 0.3690 -2.4399 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6886 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8526 0.5914 0.8584 31 1 3.9787 2.1785 0.0625 32 1 6.0038 0.7703 -0.7483 33 1 5.6771 -0.3936 -2.0548 34 1 8.4306 -1.9369 -0.1591 35 1 3.6208 3.3543 -1.4003 36 1 5.2735 2.7187 -1.3031 37 1 5.1872 4.6122 -2.7278 38 1 5.5731 3.1489 -3.6524 39 1 2.7077 4.1349 -3.4532 40 1 3.8311 4.8193 -4.6548 41 1 3.0757 3.0787 -5.9033 42 1 4.3437 2.2118 -5.0175 43 1 1.3495 2.1691 -4.5730 44 1 2.4542 0.8083 -4.8362 45 1 0.7897 0.3896 -2.7922 46 1 2.2189 -0.4599 -2.7513 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250172493.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:40 Heat of formation + Delta-G solvation = -39.940797 kcal Electronic energy + Delta-G solvation = -23373.343234 eV Core-core repulsion = 20298.003297 eV Total energy + Delta-G solvation = -3075.339938 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.09980 -38.13412 -36.92405 -35.15256 -34.60014 -32.21588 -30.76887 -29.59618 -27.85209 -26.70707 -25.47230 -24.18612 -23.76932 -22.31430 -20.87442 -20.01325 -18.44230 -17.27437 -16.89491 -16.79534 -16.33684 -16.19109 -15.68995 -15.28529 -15.11490 -15.02187 -14.71759 -14.30673 -14.24338 -14.08957 -13.70124 -13.36349 -12.97829 -12.86014 -12.79801 -12.59440 -12.42744 -12.24190 -12.12386 -11.92250 -11.74691 -11.55369 -11.45465 -11.31662 -11.20567 -11.03348 -10.91771 -10.55127 -9.81101 -8.91407 -8.60417 -8.13543 -6.21847 1.40800 1.44284 1.52315 2.44075 3.17318 3.30203 3.51152 3.64978 3.79351 4.06546 4.23258 4.24730 4.29356 4.32995 4.42481 4.51952 4.57305 4.61044 4.77524 4.81028 4.87011 4.90120 4.95578 4.98760 5.02079 5.05128 5.13647 5.15216 5.23029 5.26340 5.28464 5.34483 5.38312 5.42072 5.47741 5.55787 5.58496 5.75536 6.17980 6.54933 6.61473 6.88156 6.96070 7.03931 7.07150 7.47375 8.96124 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.016873 B = 0.006954 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.103147 B = 4025.248752 C = 5048.301997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.371 6.371 3 C 0.092 3.908 4 C 0.061 3.939 5 N -0.494 5.494 6 C 0.214 3.786 7 C -0.509 4.509 8 H 0.059 0.941 9 C 0.000 4.000 10 N -0.938 5.938 11 Si 0.964 3.036 12 H -0.283 1.283 13 H -0.271 1.271 14 H -0.271 1.271 15 C 0.090 3.910 16 H 0.048 0.952 17 C -0.138 4.138 18 C -0.113 4.113 19 C -0.107 4.107 20 C -0.116 4.116 21 C -0.141 4.141 22 C 0.111 3.889 23 H 0.077 0.923 24 N -0.806 5.806 25 H 0.025 0.975 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.024 0.976 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.041 0.959 32 H -0.046 1.046 33 H -0.007 1.007 34 H 0.261 0.739 35 H 0.071 0.929 36 H 0.029 0.971 37 H 0.065 0.935 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.075 0.925 44 H 0.049 0.951 45 H 0.329 0.671 46 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.106 10.848 -6.683 19.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.289 6.289 3 C 0.015 3.985 4 C -0.067 4.067 5 N -0.216 5.216 6 C 0.087 3.913 7 C -0.547 4.547 8 H 0.077 0.923 9 C -0.197 4.197 10 N -0.579 5.579 11 Si 0.790 3.210 12 H -0.209 1.209 13 H -0.196 1.196 14 H -0.196 1.196 15 C -0.020 4.020 16 H 0.066 0.934 17 C -0.177 4.177 18 C -0.151 4.151 19 C -0.144 4.144 20 C -0.154 4.154 21 C -0.181 4.181 22 C -0.001 4.001 23 H 0.095 0.905 24 N -0.334 5.334 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.059 0.941 32 H -0.029 1.029 33 H 0.011 0.989 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.141 0.859 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -14.017 10.440 -6.005 18.481 hybrid contribution 1.189 -0.225 -0.208 1.227 sum -12.829 10.215 -6.213 17.537 Atomic orbital electron populations 1.22571 0.82206 1.01662 0.99133 1.88040 1.18686 1.27281 1.94856 1.22437 0.91592 0.85665 0.98767 1.22032 0.95277 0.96302 0.93085 1.62034 1.23688 1.33165 1.02742 1.19299 0.84930 0.92526 0.94521 1.21453 0.94057 1.16367 1.22824 0.92282 1.25852 0.95099 1.00146 0.98642 1.70088 0.99680 1.43240 1.44896 0.85511 0.76894 0.79303 0.79321 1.20891 1.19636 1.19577 1.21559 0.96621 0.90245 0.93558 0.93395 1.21028 1.00408 0.97350 0.98963 1.20434 0.98651 0.99333 0.96657 1.21281 0.97828 0.97812 0.97495 1.21292 0.98664 0.96131 0.99355 1.22778 0.99767 0.99194 0.96409 1.21272 0.92292 0.94158 0.92381 0.90500 1.59097 1.04549 1.03238 1.66522 0.95629 0.93326 0.90837 0.95785 0.90557 0.93693 0.94109 1.02871 0.98878 0.92994 0.91050 0.95210 0.91669 0.93822 0.90982 0.90477 0.91013 0.93968 0.90601 0.93257 0.85859 0.84941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.05 10.60 113.37 1.20 2.25 16 2 O -0.37 -13.04 8.94 -148.98 -1.33 -14.38 16 3 C 0.09 3.01 5.21 71.98 0.37 3.39 16 4 C 0.06 2.48 4.79 86.30 0.41 2.89 16 5 N -0.49 -21.25 3.30 -877.85 -2.89 -24.15 16 6 C 0.21 11.75 4.49 85.56 0.38 12.14 16 7 C -0.51 -30.14 8.24 25.60 0.21 -29.93 16 8 H 0.06 3.55 7.33 -2.91 -0.02 3.53 16 9 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 10 N -0.94 -58.44 13.29 21.45 0.28 -58.15 16 11 Si 0.96 46.68 29.54 68.60 2.03 48.71 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 13 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 14 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 15 C 0.09 3.09 1.63 44.52 0.07 3.16 16 16 H 0.05 1.87 6.55 -2.39 -0.02 1.85 16 17 C -0.14 -4.31 3.21 28.74 0.09 -4.21 16 18 C -0.11 -2.88 5.26 28.74 0.15 -2.73 16 19 C -0.11 -2.10 5.61 30.20 0.17 -1.93 16 20 C -0.12 -2.41 5.32 30.14 0.16 -2.25 16 21 C -0.14 -3.00 5.34 31.31 0.17 -2.83 16 22 C 0.11 2.88 1.55 44.46 0.07 2.95 16 23 H 0.08 1.88 4.89 -2.39 -0.01 1.87 16 24 N -0.81 -21.90 4.00 -170.58 -0.68 -22.59 16 25 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.05 1.04 7.34 -2.39 -0.02 1.02 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 2.19 3.91 -2.39 -0.01 2.18 16 30 H 0.04 2.15 6.61 -2.39 -0.02 2.13 16 31 H 0.04 1.57 5.37 -2.38 -0.01 1.55 16 32 H -0.05 -2.78 7.33 -2.39 -0.02 -2.79 16 33 H -0.01 -0.41 7.81 -2.38 -0.02 -0.43 16 34 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 35 H 0.07 1.99 6.68 -2.39 -0.02 1.98 16 36 H 0.03 1.13 6.57 -2.39 -0.02 1.11 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.04 1.25 7.47 -2.38 -0.02 1.23 16 39 H 0.07 1.32 6.98 -2.39 -0.02 1.30 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.04 1.05 6.63 -2.39 -0.02 1.03 16 43 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 44 H 0.05 1.13 8.12 -2.39 -0.02 1.12 16 45 H 0.33 7.09 8.39 -89.69 -0.75 6.34 16 46 H 0.34 10.93 8.66 -89.69 -0.78 10.15 16 Total: -1.00 -66.64 329.03 0.77 -65.87 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -0.56 Total: 21.36 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 3.93 Total: -16.67 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -3.29 Total: -104.88 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -1.33 Total: -14.38 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -66.64 0.77 -65.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250172493.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.928 kcal (2) G-P(sol) polarization free energy of solvation -66.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds