Wall clock time and date at job start Mon Mar 30 2020 05:13:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.42891 * 114.00111 * 2 1
4 4 C 1.53002 * 109.47072 * 179.97438 * 3 2 1
5 5 N 1.46902 * 109.47444 * 63.44957 * 4 3 2
6 6 C 1.46900 * 110.99962 * 199.35386 * 5 4 3
7 7 C 1.50697 * 109.47273 * 66.46365 * 6 5 4
8 8 H 1.07994 * 120.00131 * 359.97438 * 7 6 5
9 9 C 1.37879 * 119.99765 * 179.97438 * 7 6 5
10 10 N 1.31514 * 119.99892 * 359.97438 * 9 7 6
11 11 Si 1.86799 * 120.00005 * 179.97438 * 9 7 6
12 12 H 1.48496 * 109.47356 * 180.02562 * 11 9 7
13 13 H 1.48497 * 109.47112 * 300.00210 * 11 9 7
14 14 H 1.48502 * 109.46799 * 59.99888 * 11 9 7
15 15 C 1.46892 * 110.99904 * 75.39571 * 5 4 3
16 16 H 1.09003 * 109.62942 * 162.11119 * 15 5 4
17 17 C 1.54237 * 109.63093 * 41.72035 * 15 5 4
18 18 C 1.45545 * 112.40660 * 160.30349 * 17 15 5
19 19 C 1.54237 * 112.40958 * 61.93601 * 18 17 15
20 20 C 1.50474 * 108.52349 * 280.01564 * 19 18 17
21 21 C 1.54064 * 112.49801 * 94.14729 * 20 19 18
22 22 C 1.50481 * 109.63027 * 282.69010 * 15 5 4
23 23 H 1.09001 * 108.87301 * 93.08302 * 22 15 5
24 24 N 1.46898 * 108.87365 * 334.64255 * 22 15 5
25 25 H 1.08992 * 109.47356 * 300.00353 * 1 2 3
26 26 H 1.09003 * 109.46986 * 60.00078 * 1 2 3
27 27 H 1.09002 * 109.47267 * 179.97438 * 1 2 3
28 28 H 1.09000 * 109.47689 * 59.99999 * 3 2 1
29 29 H 1.09001 * 109.47313 * 299.99675 * 3 2 1
30 30 H 1.08998 * 109.47254 * 303.44442 * 4 3 2
31 31 H 1.09007 * 109.47306 * 183.44789 * 4 3 2
32 32 H 1.08998 * 109.46724 * 306.46047 * 6 5 4
33 33 H 1.09004 * 109.46798 * 186.46622 * 6 5 4
34 34 H 0.96998 * 119.99727 * 180.02562 * 10 9 7
35 35 H 1.08999 * 108.89684 * 281.05239 * 17 15 5
36 36 H 1.08993 * 108.89490 * 39.64224 * 17 15 5
37 37 H 1.08998 * 108.89710 * 182.69553 * 18 17 15
38 38 H 1.09005 * 108.89250 * 301.27902 * 18 17 15
39 39 H 1.08994 * 109.62808 * 39.72258 * 19 18 17
40 40 H 1.08996 * 109.63278 * 160.11395 * 19 18 17
41 41 H 1.08999 * 108.88130 * 214.92725 * 20 19 18
42 42 H 1.09001 * 108.87681 * 333.47398 * 20 19 18
43 43 H 1.09001 * 108.81530 * 79.14477 * 21 20 19
44 44 H 1.09000 * 108.81544 * 197.53644 * 21 20 19
45 45 H 1.00903 * 110.99374 * 184.70398 * 24 22 15
46 46 H 1.00900 * 111.00465 * 308.65620 * 24 22 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5354 1.1845 0.0006
5 7 3.9753 0.5285 -1.2380
6 6 5.3318 -0.0160 -1.0923
7 6 5.3171 -1.1393 -0.0878
8 1 4.3926 -1.4204 0.3944
9 6 6.4840 -1.8081 0.2155
10 7 7.6098 -1.4661 -0.3722
11 14 6.4660 -3.2001 1.4611
12 1 7.8373 -3.7505 1.6082
13 1 5.9966 -2.6849 2.7723
14 1 5.5498 -4.2711 0.9932
15 6 3.8979 1.4510 -2.3784
16 1 4.5077 1.0716 -3.1984
17 6 4.4083 2.8433 -1.9542
18 6 4.7921 3.6642 -3.0931
19 6 3.6075 3.9481 -4.0391
20 6 3.3979 2.7442 -4.9172
21 6 2.3417 1.7770 -4.3493
22 6 2.4672 1.5825 -2.8261
23 1 2.0175 2.4385 -2.3230
24 7 1.7350 0.3690 -2.4399
25 1 -0.3633 0.5138 0.8899
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3634 -1.0277 -0.0005
28 1 1.6886 1.8464 0.8900
29 1 1.6886 1.8463 -0.8900
30 1 3.8526 0.5914 0.8584
31 1 3.9787 2.1785 0.0625
32 1 6.0038 0.7703 -0.7483
33 1 5.6771 -0.3936 -2.0548
34 1 8.4306 -1.9369 -0.1591
35 1 3.6208 3.3543 -1.4003
36 1 5.2735 2.7187 -1.3031
37 1 5.1872 4.6122 -2.7278
38 1 5.5731 3.1489 -3.6524
39 1 2.7077 4.1349 -3.4532
40 1 3.8311 4.8193 -4.6548
41 1 3.0757 3.0787 -5.9033
42 1 4.3437 2.2118 -5.0175
43 1 1.3495 2.1691 -4.5730
44 1 2.4542 0.8083 -4.8362
45 1 0.7897 0.3896 -2.7922
46 1 2.2189 -0.4599 -2.7513
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000250172493.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:13:40
Heat of formation + Delta-G solvation = -39.940797 kcal
Electronic energy + Delta-G solvation = -23373.343234 eV
Core-core repulsion = 20298.003297 eV
Total energy + Delta-G solvation = -3075.339938 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.56 seconds
Orbital eigenvalues (eV)
-41.09980 -38.13412 -36.92405 -35.15256 -34.60014 -32.21588 -30.76887 -29.59618
-27.85209 -26.70707 -25.47230 -24.18612 -23.76932 -22.31430 -20.87442 -20.01325
-18.44230 -17.27437 -16.89491 -16.79534 -16.33684 -16.19109 -15.68995 -15.28529
-15.11490 -15.02187 -14.71759 -14.30673 -14.24338 -14.08957 -13.70124 -13.36349
-12.97829 -12.86014 -12.79801 -12.59440 -12.42744 -12.24190 -12.12386 -11.92250
-11.74691 -11.55369 -11.45465 -11.31662 -11.20567 -11.03348 -10.91771 -10.55127
-9.81101 -8.91407 -8.60417 -8.13543 -6.21847 1.40800 1.44284 1.52315
2.44075 3.17318 3.30203 3.51152 3.64978 3.79351 4.06546 4.23258
4.24730 4.29356 4.32995 4.42481 4.51952 4.57305 4.61044 4.77524
4.81028 4.87011 4.90120 4.95578 4.98760 5.02079 5.05128 5.13647
5.15216 5.23029 5.26340 5.28464 5.34483 5.38312 5.42072 5.47741
5.55787 5.58496 5.75536 6.17980 6.54933 6.61473 6.88156 6.96070
7.03931 7.07150 7.47375 8.96124
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.016873 B = 0.006954 C = 0.005545
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1659.103147 B = 4025.248752 C = 5048.301997
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.041 3.959
2 O -0.371 6.371
3 C 0.092 3.908
4 C 0.061 3.939
5 N -0.494 5.494
6 C 0.214 3.786
7 C -0.509 4.509
8 H 0.059 0.941
9 C 0.000 4.000
10 N -0.938 5.938
11 Si 0.964 3.036
12 H -0.283 1.283
13 H -0.271 1.271
14 H -0.271 1.271
15 C 0.090 3.910
16 H 0.048 0.952
17 C -0.138 4.138
18 C -0.113 4.113
19 C -0.107 4.107
20 C -0.116 4.116
21 C -0.141 4.141
22 C 0.111 3.889
23 H 0.077 0.923
24 N -0.806 5.806
25 H 0.025 0.975
26 H 0.048 0.952
27 H 0.073 0.927
28 H 0.024 0.976
29 H 0.077 0.923
30 H 0.044 0.956
31 H 0.041 0.959
32 H -0.046 1.046
33 H -0.007 1.007
34 H 0.261 0.739
35 H 0.071 0.929
36 H 0.029 0.971
37 H 0.065 0.935
38 H 0.043 0.957
39 H 0.072 0.928
40 H 0.077 0.923
41 H 0.071 0.929
42 H 0.041 0.959
43 H 0.075 0.925
44 H 0.049 0.951
45 H 0.329 0.671
46 H 0.337 0.663
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.106 10.848 -6.683 19.008
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 O -0.289 6.289
3 C 0.015 3.985
4 C -0.067 4.067
5 N -0.216 5.216
6 C 0.087 3.913
7 C -0.547 4.547
8 H 0.077 0.923
9 C -0.197 4.197
10 N -0.579 5.579
11 Si 0.790 3.210
12 H -0.209 1.209
13 H -0.196 1.196
14 H -0.196 1.196
15 C -0.020 4.020
16 H 0.066 0.934
17 C -0.177 4.177
18 C -0.151 4.151
19 C -0.144 4.144
20 C -0.154 4.154
21 C -0.181 4.181
22 C -0.001 4.001
23 H 0.095 0.905
24 N -0.334 5.334
25 H 0.044 0.956
26 H 0.067 0.933
27 H 0.092 0.908
28 H 0.042 0.958
29 H 0.094 0.906
30 H 0.063 0.937
31 H 0.059 0.941
32 H -0.029 1.029
33 H 0.011 0.989
34 H 0.070 0.930
35 H 0.089 0.911
36 H 0.048 0.952
37 H 0.083 0.917
38 H 0.062 0.938
39 H 0.090 0.910
40 H 0.095 0.905
41 H 0.090 0.910
42 H 0.060 0.940
43 H 0.094 0.906
44 H 0.067 0.933
45 H 0.141 0.859
46 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -14.017 10.440 -6.005 18.481
hybrid contribution 1.189 -0.225 -0.208 1.227
sum -12.829 10.215 -6.213 17.537
Atomic orbital electron populations
1.22571 0.82206 1.01662 0.99133 1.88040 1.18686 1.27281 1.94856
1.22437 0.91592 0.85665 0.98767 1.22032 0.95277 0.96302 0.93085
1.62034 1.23688 1.33165 1.02742 1.19299 0.84930 0.92526 0.94521
1.21453 0.94057 1.16367 1.22824 0.92282 1.25852 0.95099 1.00146
0.98642 1.70088 0.99680 1.43240 1.44896 0.85511 0.76894 0.79303
0.79321 1.20891 1.19636 1.19577 1.21559 0.96621 0.90245 0.93558
0.93395 1.21028 1.00408 0.97350 0.98963 1.20434 0.98651 0.99333
0.96657 1.21281 0.97828 0.97812 0.97495 1.21292 0.98664 0.96131
0.99355 1.22778 0.99767 0.99194 0.96409 1.21272 0.92292 0.94158
0.92381 0.90500 1.59097 1.04549 1.03238 1.66522 0.95629 0.93326
0.90837 0.95785 0.90557 0.93693 0.94109 1.02871 0.98878 0.92994
0.91050 0.95210 0.91669 0.93822 0.90982 0.90477 0.91013 0.93968
0.90601 0.93257 0.85859 0.84941
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 1.05 10.60 113.37 1.20 2.25 16
2 O -0.37 -13.04 8.94 -148.98 -1.33 -14.38 16
3 C 0.09 3.01 5.21 71.98 0.37 3.39 16
4 C 0.06 2.48 4.79 86.30 0.41 2.89 16
5 N -0.49 -21.25 3.30 -877.85 -2.89 -24.15 16
6 C 0.21 11.75 4.49 85.56 0.38 12.14 16
7 C -0.51 -30.14 8.24 25.60 0.21 -29.93 16
8 H 0.06 3.55 7.33 -2.91 -0.02 3.53 16
9 C 0.00 -0.02 5.46 84.66 0.46 0.44 16
10 N -0.94 -58.44 13.29 21.45 0.28 -58.15 16
11 Si 0.96 46.68 29.54 68.60 2.03 48.71 16
12 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16
13 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16
14 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16
15 C 0.09 3.09 1.63 44.52 0.07 3.16 16
16 H 0.05 1.87 6.55 -2.39 -0.02 1.85 16
17 C -0.14 -4.31 3.21 28.74 0.09 -4.21 16
18 C -0.11 -2.88 5.26 28.74 0.15 -2.73 16
19 C -0.11 -2.10 5.61 30.20 0.17 -1.93 16
20 C -0.12 -2.41 5.32 30.14 0.16 -2.25 16
21 C -0.14 -3.00 5.34 31.31 0.17 -2.83 16
22 C 0.11 2.88 1.55 44.46 0.07 2.95 16
23 H 0.08 1.88 4.89 -2.39 -0.01 1.87 16
24 N -0.81 -21.90 4.00 -170.58 -0.68 -22.59 16
25 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16
26 H 0.05 1.04 7.34 -2.39 -0.02 1.02 16
27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16
28 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16
29 H 0.08 2.19 3.91 -2.39 -0.01 2.18 16
30 H 0.04 2.15 6.61 -2.39 -0.02 2.13 16
31 H 0.04 1.57 5.37 -2.38 -0.01 1.55 16
32 H -0.05 -2.78 7.33 -2.39 -0.02 -2.79 16
33 H -0.01 -0.41 7.81 -2.38 -0.02 -0.43 16
34 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16
35 H 0.07 1.99 6.68 -2.39 -0.02 1.98 16
36 H 0.03 1.13 6.57 -2.39 -0.02 1.11 16
37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16
38 H 0.04 1.25 7.47 -2.38 -0.02 1.23 16
39 H 0.07 1.32 6.98 -2.39 -0.02 1.30 16
40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16
41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16
42 H 0.04 1.05 6.63 -2.39 -0.02 1.03 16
43 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16
44 H 0.05 1.13 8.12 -2.39 -0.02 1.12 16
45 H 0.33 7.09 8.39 -89.69 -0.75 6.34 16
46 H 0.34 10.93 8.66 -89.69 -0.78 10.15 16
Total: -1.00 -66.64 329.03 0.77 -65.87
By element:
Atomic # 1 Polarization: 21.91 SS G_CDS: -0.56 Total: 21.36 kcal
Atomic # 6 Polarization: -20.60 SS G_CDS: 3.93 Total: -16.67 kcal
Atomic # 7 Polarization: -101.59 SS G_CDS: -3.29 Total: -104.88 kcal
Atomic # 8 Polarization: -13.04 SS G_CDS: -1.33 Total: -14.38 kcal
Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal
Total: -66.64 0.77 -65.87 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000250172493.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.928 kcal
(2) G-P(sol) polarization free energy of solvation -66.643 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.715 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.774 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.869 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.941 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.56 seconds