Wall clock time and date at job start Mon Mar 30 2020 05:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32560 * 120.40763 * 2 1 4 4 C 1.31790 * 121.03088 * 180.33150 * 3 2 1 5 5 N 1.31742 * 121.86962 * 359.67197 * 4 3 2 6 6 C 1.33018 * 120.69671 * 0.02562 * 5 4 3 7 7 N 1.38534 * 120.54509 * 179.97438 * 6 5 4 8 8 C 1.46505 * 119.99530 * 265.13992 * 7 6 5 9 9 C 1.36924 * 120.00310 * 85.14059 * 7 6 5 10 10 H 1.07997 * 119.99539 * 6.97352 * 9 7 6 11 11 C 1.38845 * 120.00255 * 186.97591 * 9 7 6 12 12 N 1.31533 * 119.99499 * 24.99120 * 11 9 7 13 13 Si 1.86793 * 120.00222 * 204.99295 * 11 9 7 14 14 H 1.48501 * 109.47392 * 94.99610 * 13 11 9 15 15 H 1.48500 * 109.47148 * 215.00163 * 13 11 9 16 16 H 1.48502 * 109.47077 * 334.99852 * 13 11 9 17 17 C 1.38214 * 120.40481 * 179.72477 * 2 1 3 18 18 Br 1.89101 * 120.85036 * 359.97031 * 17 2 1 19 19 H 1.09005 * 109.47357 * 270.27564 * 1 2 3 20 20 H 1.09001 * 109.47507 * 30.27807 * 1 2 3 21 21 H 1.09001 * 109.47485 * 150.27680 * 1 2 3 22 22 H 1.08002 * 119.06466 * 179.67912 * 4 3 2 23 23 H 1.08995 * 109.47095 * 95.83398 * 8 7 6 24 24 H 1.09008 * 109.46776 * 215.83069 * 8 7 6 25 25 H 1.08997 * 109.47431 * 335.82955 * 8 7 6 26 26 H 0.97006 * 119.99769 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1779 1.1433 0.0000 4 6 3.4957 1.1576 -0.0065 5 7 4.2035 0.0464 -0.0069 6 6 3.6035 -1.1408 -0.0011 7 7 4.3508 -2.3073 -0.0021 8 6 4.6491 -2.9849 -1.2663 9 6 4.8106 -2.8268 1.1784 10 1 4.4984 -2.3934 2.1170 11 6 5.6782 -3.9108 1.1687 12 7 6.4368 -4.1365 0.1181 13 14 5.7681 -5.0485 2.6474 14 1 4.8743 -6.2143 2.4301 15 1 7.1646 -5.5215 2.8239 16 1 5.3367 -4.3141 3.8639 17 6 2.2065 -1.1920 0.0057 18 35 1.2971 -2.8500 0.0145 19 1 -0.3634 0.0049 1.0277 20 1 -0.3634 0.8875 -0.5181 21 1 -0.3634 -0.8924 -0.5095 22 1 4.0101 2.1073 -0.0116 23 1 5.6332 -2.6774 -1.6200 24 1 4.6397 -4.0639 -1.1111 25 1 3.8966 -2.7179 -2.0081 26 1 7.0433 -4.8935 0.1115 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260088896.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:30 Heat of formation + Delta-G solvation = 81.688943 kcal Electronic energy + Delta-G solvation = -13546.631025 eV Core-core repulsion = 11094.088538 eV Total energy + Delta-G solvation = -2452.542487 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.002 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.35371 -36.19943 -33.80196 -32.50505 -30.65288 -29.47789 -27.68533 -26.22894 -24.13339 -22.97015 -20.82993 -17.55446 -17.09360 -16.13165 -14.78863 -14.64621 -14.48560 -13.81665 -13.35653 -12.94184 -12.54108 -12.36746 -12.16453 -11.30949 -11.19219 -10.80059 -10.64883 -10.39870 -10.32147 -10.14893 -9.75625 -9.65058 -8.83976 -8.55098 -8.43550 -7.42611 -6.09483 -3.40169 1.31065 1.62030 2.20504 3.28102 3.34863 3.36958 4.13124 4.25308 4.44077 4.61425 4.86506 5.18372 5.40084 5.58340 5.68200 5.78439 6.05358 6.12706 6.46188 6.77830 7.15601 7.40097 7.58304 7.59602 8.02516 8.70802 8.85738 9.52513 9.85244 10.96153 Molecular weight = 271.00amu Principal moments of inertia in cm(-1) A = 0.024760 B = 0.009742 C = 0.008042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.590175 B = 2873.538603 C = 3480.836471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.194 3.806 3 N -0.548 5.548 4 C 0.304 3.696 5 N -0.534 5.534 6 C 0.464 3.536 7 N -0.528 5.528 8 C 0.164 3.836 9 C -0.257 4.257 10 H 0.080 0.920 11 C 0.018 3.982 12 N -0.884 5.884 13 Si 0.913 3.087 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.275 1.275 17 C -0.214 4.214 18 Br -0.027 7.027 19 H 0.084 0.916 20 H 0.080 0.920 21 H 0.082 0.918 22 H 0.188 0.812 23 H 0.037 0.963 24 H 0.071 0.929 25 H 0.006 0.994 26 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.099 3.664 -1.597 11.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.047 3.953 3 N -0.266 5.266 4 C 0.014 3.986 5 N -0.254 5.254 6 C 0.224 3.776 7 N -0.244 5.244 8 C 0.021 3.979 9 C -0.385 4.385 10 H 0.098 0.902 11 C -0.184 4.184 12 N -0.525 5.525 13 Si 0.741 3.259 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.200 1.200 17 C -0.304 4.304 18 Br 0.057 6.943 19 H 0.102 0.898 20 H 0.099 0.901 21 H 0.101 0.899 22 H 0.205 0.795 23 H 0.056 0.944 24 H 0.089 0.911 25 H 0.025 0.975 26 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.727 3.662 -1.650 11.455 hybrid contribution 0.234 -0.815 0.744 1.128 sum -10.493 2.847 -0.907 10.910 Atomic orbital electron populations 1.20850 0.88265 1.03901 1.03647 1.21437 0.97167 0.86889 0.89825 1.68272 1.10636 1.28719 1.19020 1.24797 0.86536 0.96958 0.90294 1.68954 1.42234 0.98911 1.15322 1.18488 0.87229 0.87295 0.84547 1.41725 1.58546 1.17843 1.06246 1.21046 0.96309 0.98112 0.82408 1.19248 1.25112 1.10179 0.83939 0.90202 1.24885 0.95447 0.99876 0.98178 1.70197 1.22509 1.29399 1.30404 0.86104 0.77174 0.80978 0.81637 1.20716 1.21436 1.19993 1.24407 0.96930 0.93341 1.15708 1.96537 1.74474 1.25749 1.97563 0.89760 0.90145 0.89901 0.79525 0.94424 0.91069 0.97529 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.79 36.00 0.35 -1.07 15 2 C 0.19 3.40 6.82 -82.29 -0.56 2.84 15 3 N -0.55 -9.79 10.37 -10.86 -0.11 -9.90 15 4 C 0.30 5.57 12.28 -92.20 -1.13 4.44 15 5 N -0.53 -11.94 10.47 -13.77 -0.14 -12.08 15 6 C 0.46 10.73 6.06 -154.70 -0.94 9.80 15 7 N -0.53 -13.36 2.41 -122.19 -0.29 -13.65 15 8 C 0.16 4.00 9.03 59.85 0.54 4.54 15 9 C -0.26 -6.96 9.68 -15.05 -0.15 -7.11 15 10 H 0.08 2.19 7.94 -52.49 -0.42 1.78 15 11 C 0.02 0.47 4.93 -17.45 -0.09 0.38 15 12 N -0.88 -24.39 10.59 55.49 0.59 -23.80 15 13 Si 0.91 21.06 29.62 -169.99 -5.04 16.02 15 14 H -0.28 -6.42 7.11 56.52 0.40 -6.01 15 15 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 16 H -0.28 -6.28 7.11 56.52 0.40 -5.87 15 17 C -0.21 -4.28 6.29 -39.01 -0.25 -4.53 15 18 Br -0.03 -0.48 31.46 -68.01 -2.14 -2.62 15 19 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 20 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 21 H 0.08 1.01 6.76 -51.93 -0.35 0.66 15 22 H 0.19 2.65 8.06 -52.49 -0.42 2.23 15 23 H 0.04 0.98 7.73 -51.93 -0.40 0.58 15 24 H 0.07 1.81 6.62 -51.92 -0.34 1.46 15 25 H 0.01 0.13 8.00 -51.93 -0.42 -0.28 15 26 H 0.26 6.88 8.31 -40.82 -0.34 6.54 15 LS Contribution 250.83 15.07 3.78 3.78 Total: -1.00 -29.16 250.83 -7.91 -37.07 By element: Atomic # 1 Polarization: -1.77 SS G_CDS: -2.33 Total: -4.11 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: -2.22 Total: 9.29 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: 0.04 Total: -59.43 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.04 Total: 16.02 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -2.14 Total: -2.62 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.16 -7.91 -37.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088896.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.754 kcal (2) G-P(sol) polarization free energy of solvation -29.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds