Wall clock time and date at job start Mon Mar 30 2020 05:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32560 * 120.40763 * 2 1 4 4 C 1.31790 * 121.03088 * 180.33150 * 3 2 1 5 5 N 1.31742 * 121.86962 * 359.67197 * 4 3 2 6 6 C 1.33018 * 120.69671 * 0.02562 * 5 4 3 7 7 N 1.38534 * 120.54509 * 179.97438 * 6 5 4 8 8 C 1.46505 * 119.99530 * 265.13992 * 7 6 5 9 9 C 1.36924 * 120.00310 * 85.14059 * 7 6 5 10 10 H 1.07997 * 119.99539 * 6.97352 * 9 7 6 11 11 C 1.38845 * 120.00255 * 186.97591 * 9 7 6 12 12 N 1.31533 * 119.99499 * 24.99120 * 11 9 7 13 13 Si 1.86793 * 120.00222 * 204.99295 * 11 9 7 14 14 H 1.48501 * 109.47392 * 94.99610 * 13 11 9 15 15 H 1.48500 * 109.47148 * 215.00163 * 13 11 9 16 16 H 1.48502 * 109.47077 * 334.99852 * 13 11 9 17 17 C 1.38214 * 120.40481 * 179.72477 * 2 1 3 18 18 Br 1.89101 * 120.85036 * 359.97031 * 17 2 1 19 19 H 1.09005 * 109.47357 * 270.27564 * 1 2 3 20 20 H 1.09001 * 109.47507 * 30.27807 * 1 2 3 21 21 H 1.09001 * 109.47485 * 150.27680 * 1 2 3 22 22 H 1.08002 * 119.06466 * 179.67912 * 4 3 2 23 23 H 1.08995 * 109.47095 * 95.83398 * 8 7 6 24 24 H 1.09008 * 109.46776 * 215.83069 * 8 7 6 25 25 H 1.08997 * 109.47431 * 335.82955 * 8 7 6 26 26 H 0.97006 * 119.99769 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1779 1.1433 0.0000 4 6 3.4957 1.1576 -0.0065 5 7 4.2035 0.0464 -0.0069 6 6 3.6035 -1.1408 -0.0011 7 7 4.3508 -2.3073 -0.0021 8 6 4.6491 -2.9849 -1.2663 9 6 4.8106 -2.8268 1.1784 10 1 4.4984 -2.3934 2.1170 11 6 5.6782 -3.9108 1.1687 12 7 6.4368 -4.1365 0.1181 13 14 5.7681 -5.0485 2.6474 14 1 4.8743 -6.2143 2.4301 15 1 7.1646 -5.5215 2.8239 16 1 5.3367 -4.3141 3.8639 17 6 2.2065 -1.1920 0.0057 18 35 1.2971 -2.8500 0.0145 19 1 -0.3634 0.0049 1.0277 20 1 -0.3634 0.8875 -0.5181 21 1 -0.3634 -0.8924 -0.5095 22 1 4.0101 2.1073 -0.0116 23 1 5.6332 -2.6774 -1.6200 24 1 4.6397 -4.0639 -1.1111 25 1 3.8966 -2.7179 -2.0081 26 1 7.0433 -4.8935 0.1115 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260088896.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:30 Heat of formation + Delta-G solvation = 65.209700 kcal Electronic energy + Delta-G solvation = -13547.345618 eV Core-core repulsion = 11094.088538 eV Total energy + Delta-G solvation = -2453.257080 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.002 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.93428 -37.98537 -35.31385 -34.24862 -32.42524 -30.92074 -29.11646 -28.18096 -25.89287 -24.51150 -22.49747 -19.34652 -18.74667 -17.88345 -16.51120 -16.18550 -16.01871 -15.55143 -15.10248 -14.47600 -14.02572 -13.78152 -13.38152 -13.18798 -13.04246 -12.57031 -12.26505 -12.19124 -12.05384 -11.94717 -11.27732 -11.16175 -10.75094 -10.17552 -9.96818 -9.35007 -8.05353 -5.44051 -0.22218 0.04456 0.66840 1.45234 1.48133 1.56660 2.33777 2.70327 2.86914 3.08830 3.10988 3.52214 3.86930 4.12452 4.41469 4.58095 4.69982 4.78609 5.01287 5.18166 5.30671 5.44749 5.55417 5.95932 6.14084 6.88138 7.15161 7.62280 7.93726 9.00819 Molecular weight = 271.00amu Principal moments of inertia in cm(-1) A = 0.024760 B = 0.009742 C = 0.008042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.590175 B = 2873.538603 C = 3480.836471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.201 3.799 3 N -0.537 5.537 4 C 0.309 3.691 5 N -0.572 5.572 6 C 0.447 3.553 7 N -0.550 5.550 8 C 0.186 3.814 9 C -0.272 4.272 10 H 0.066 0.934 11 C -0.025 4.025 12 N -0.918 5.918 13 Si 0.970 3.030 14 H -0.276 1.276 15 H -0.289 1.289 16 H -0.272 1.272 17 C -0.224 4.224 18 Br -0.008 7.008 19 H 0.104 0.896 20 H 0.102 0.898 21 H 0.092 0.908 22 H 0.228 0.772 23 H 0.007 0.993 24 H 0.055 0.945 25 H 0.024 0.976 26 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.207 4.821 -1.221 14.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.053 3.947 3 N -0.254 5.254 4 C 0.021 3.979 5 N -0.292 5.292 6 C 0.210 3.790 7 N -0.269 5.269 8 C 0.042 3.958 9 C -0.399 4.399 10 H 0.084 0.916 11 C -0.223 4.223 12 N -0.562 5.562 13 Si 0.797 3.203 14 H -0.202 1.202 15 H -0.216 1.216 16 H -0.197 1.197 17 C -0.313 4.313 18 Br 0.076 6.924 19 H 0.122 0.878 20 H 0.121 0.879 21 H 0.110 0.890 22 H 0.244 0.756 23 H 0.026 0.974 24 H 0.073 0.927 25 H 0.043 0.957 26 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.886 4.875 -1.270 13.836 hybrid contribution 0.683 -0.927 0.591 1.294 sum -12.203 3.948 -0.680 12.844 Atomic orbital electron populations 1.21017 0.84578 1.05488 1.05291 1.22198 0.99380 0.85755 0.87348 1.68455 1.10355 1.28641 1.17921 1.25574 0.86874 0.97245 0.88245 1.68873 1.43765 0.99798 1.16754 1.18824 0.88195 0.87096 0.84910 1.41687 1.59970 1.19488 1.05708 1.20705 0.95264 0.96938 0.82866 1.19179 1.25162 1.11421 0.84178 0.91577 1.25522 0.95360 1.00812 1.00600 1.70307 1.23632 1.29980 1.32254 0.85232 0.76891 0.79239 0.78969 1.20204 1.21570 1.19677 1.24496 0.96112 0.95322 1.15343 1.96544 1.73469 1.24899 1.97512 0.87799 0.87938 0.88966 0.75615 0.97435 0.92669 0.95722 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.32 9.79 71.24 0.70 -1.62 15 2 C 0.20 6.42 6.82 42.44 0.29 6.71 15 3 N -0.54 -17.39 10.37 -188.26 -1.95 -19.34 15 4 C 0.31 10.57 12.28 180.90 2.22 12.79 15 5 N -0.57 -25.09 10.47 -197.47 -2.07 -27.16 15 6 C 0.45 20.50 6.06 133.20 0.81 21.31 15 7 N -0.55 -28.22 2.41 -540.49 -1.30 -29.52 15 8 C 0.19 9.28 9.03 127.77 1.15 10.44 15 9 C -0.27 -14.98 9.68 84.04 0.81 -14.17 15 10 H 0.07 3.72 7.94 -2.91 -0.02 3.69 15 11 C -0.03 -1.37 4.93 84.88 0.42 -0.95 15 12 N -0.92 -52.27 10.59 21.65 0.23 -52.04 15 13 Si 0.97 43.90 29.62 68.60 2.03 45.93 15 14 H -0.28 -12.14 7.11 99.48 0.71 -11.43 15 15 H -0.29 -13.01 7.11 99.48 0.71 -12.30 15 16 H -0.27 -11.99 7.11 99.48 0.71 -11.29 15 17 C -0.22 -8.58 6.29 22.64 0.14 -8.43 15 18 Br -0.01 -0.27 31.46 -20.37 -0.64 -0.92 15 19 H 0.10 1.96 8.14 -2.38 -0.02 1.94 15 20 H 0.10 1.85 8.14 -2.39 -0.02 1.83 15 21 H 0.09 1.89 6.76 -2.39 -0.02 1.87 15 22 H 0.23 5.65 8.06 -2.91 -0.02 5.62 15 23 H 0.01 0.40 7.73 -2.39 -0.02 0.38 15 24 H 0.05 2.89 6.62 -2.38 -0.02 2.87 15 25 H 0.02 1.09 8.00 -2.39 -0.02 1.07 15 26 H 0.26 14.08 8.31 -92.70 -0.77 13.31 15 Total: -1.00 -63.45 250.83 4.04 -59.42 By element: Atomic # 1 Polarization: -3.63 SS G_CDS: 1.20 Total: -2.44 kcal Atomic # 6 Polarization: 19.53 SS G_CDS: 6.54 Total: 26.07 kcal Atomic # 7 Polarization: -122.97 SS G_CDS: -5.09 Total: -128.06 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 35 Polarization: -0.27 SS G_CDS: -0.64 Total: -0.92 kcal Total: -63.45 4.04 -59.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260088896.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.625 kcal (2) G-P(sol) polarization free energy of solvation -63.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds