Wall clock time and date at job start Mon Mar 30 2020 05:32:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.50703 * 109.47081 * 2 1
4 4 N 1.31821 * 119.05976 * 270.01704 * 3 2 1
5 5 C 1.32532 * 121.02704 * 179.97438 * 4 3 2
6 6 C 1.38261 * 119.18519 * 359.75167 * 5 4 3
7 7 Br 1.89096 * 120.85057 * 180.27042 * 6 5 4
8 8 C 1.39754 * 118.30290 * 0.46953 * 6 5 4
9 9 N 1.38533 * 120.54447 * 179.79846 * 8 6 5
10 10 C 1.36925 * 120.00168 * 179.71997 * 9 8 6
11 11 H 1.08000 * 119.99410 * 359.72993 * 10 9 8
12 12 C 1.38847 * 120.00159 * 179.72941 * 10 9 8
13 13 N 1.31544 * 119.99750 * 359.97438 * 12 10 9
14 14 Si 1.86800 * 119.99930 * 180.02562 * 12 10 9
15 15 H 1.48498 * 109.47118 * 90.00165 * 14 12 10
16 16 H 1.48498 * 109.47011 * 210.00023 * 14 12 10
17 17 H 1.48499 * 109.47134 * 329.99644 * 14 12 10
18 18 N 1.31713 * 119.06645 * 90.00031 * 3 2 1
19 19 H 1.09004 * 109.46949 * 300.00145 * 1 2 3
20 20 H 1.08994 * 109.47253 * 59.99947 * 1 2 3
21 21 H 1.09001 * 109.47454 * 180.02562 * 1 2 3
22 22 H 1.08992 * 109.47233 * 239.99619 * 2 1 3
23 23 H 1.09004 * 109.47119 * 119.99520 * 2 1 3
24 24 H 1.07995 * 120.40770 * 179.97438 * 5 4 3
25 25 H 0.97005 * 119.99966 * 359.45662 * 9 8 6
26 26 H 0.97004 * 119.99310 * 179.97438 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2454 2.0246 -1.1523
5 6 2.6864 3.2736 -1.1978
6 6 2.9197 3.9497 -0.0145
7 35 3.5419 5.7354 -0.0245
8 6 2.6880 3.2784 1.1891
9 7 2.9104 3.9101 2.4017
10 6 2.6743 3.2437 3.5744
11 1 2.3105 2.2271 3.5538
12 6 2.9026 3.8750 4.7898
13 7 3.3462 5.1131 4.8147
14 14 2.5811 2.9656 6.3895
15 1 3.8143 2.2535 6.8105
16 1 2.1874 3.9376 7.4409
17 1 1.4860 1.9829 6.1888
18 7 2.2456 2.0241 1.1512
19 1 -0.3633 0.5139 0.8900
20 1 -0.3633 0.5138 -0.8899
21 1 -0.3634 -1.0277 0.0005
22 1 1.8933 -0.5138 -0.8899
23 1 1.8933 -0.5138 0.8901
24 1 2.8580 3.7584 -2.1474
25 1 3.2371 4.8233 2.4202
26 1 3.5053 5.5542 5.6638
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260239800.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:32:29
Heat of formation + Delta-G solvation = 21.032349 kcal
Electronic energy + Delta-G solvation = -13180.889578 eV
Core-core repulsion = 10725.716824 eV
Total energy + Delta-G solvation = -2455.172754 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 271.002 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-41.55857 -37.82232 -35.16154 -34.42828 -32.85322 -32.17158 -29.68168 -27.17133
-25.39131 -24.05745 -22.46744 -20.19880 -18.55880 -17.94372 -16.46826 -16.08285
-16.00494 -15.60161 -15.18983 -14.72082 -14.36727 -13.71191 -13.56071 -13.12123
-12.65879 -12.55252 -12.48532 -12.12115 -12.01040 -11.88144 -11.47865 -11.25900
-11.17404 -10.34668 -9.79865 -9.26521 -8.65866 -5.96956 0.17156 0.60132
0.83235 1.39987 1.47118 1.54152 2.18206 2.77314 2.79140 3.23246
3.38412 3.68820 4.12010 4.37006 4.41450 4.51513 4.68847 4.90676
5.06357 5.20758 5.28454 5.36980 5.50641 5.83552 6.27342 6.64742
7.11290 7.22990 7.73040 8.49851
Molecular weight = 271.00amu
Principal moments of inertia in cm(-1)
A = 0.014698 B = 0.010144 C = 0.006124
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1904.525804 B = 2759.627635 C = 4570.947382
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.049 4.049
3 C 0.354 3.646
4 N -0.604 5.604
5 C 0.215 3.785
6 C -0.322 4.322
7 Br -0.046 7.046
8 C 0.370 3.630
9 N -0.515 5.515
10 C -0.318 4.318
11 H 0.109 0.891
12 C -0.016 4.016
13 N -0.910 5.910
14 Si 1.007 2.993
15 H -0.268 1.268
16 H -0.273 1.273
17 H -0.261 1.261
18 N -0.594 5.594
19 H 0.037 0.963
20 H 0.053 0.947
21 H 0.092 0.908
22 H 0.104 0.896
23 H 0.085 0.915
24 H 0.187 0.813
25 H 0.409 0.591
26 H 0.284 0.716
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.524 -2.759 -7.729 8.347
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.088 4.088
3 C 0.083 3.917
4 N -0.329 5.329
5 C 0.052 3.948
6 C -0.415 4.415
7 Br 0.036 6.964
8 C 0.119 3.881
9 N -0.122 5.122
10 C -0.449 4.449
11 H 0.127 0.873
12 C -0.219 4.219
13 N -0.546 5.546
14 Si 0.829 3.171
15 H -0.193 1.193
16 H -0.198 1.198
17 H -0.185 1.185
18 N -0.323 5.323
19 H 0.056 0.944
20 H 0.072 0.928
21 H 0.111 0.889
22 H 0.122 0.878
23 H 0.104 0.896
24 H 0.204 0.796
25 H 0.248 0.752
26 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -1.552 -2.827 -7.214 7.902
hybrid contribution 0.421 1.089 0.866 1.454
sum -1.131 -1.738 -6.348 6.678
Atomic orbital electron populations
1.21595 0.92817 1.03385 1.01199 1.20396 0.97345 0.86738 1.04355
1.23541 0.87827 0.97490 0.82859 1.68350 1.24731 1.10621 1.29171
1.23035 0.86329 0.89126 0.96340 1.22511 1.26620 0.95519 0.96895
1.96463 1.88071 1.12988 1.98875 1.18301 0.94329 0.89601 0.85843
1.41250 1.54156 1.14522 1.02264 1.20194 1.41932 0.99936 0.82845
0.87317 1.26407 0.95645 0.96660 1.03168 1.69763 1.42679 1.12547
1.29647 0.84710 0.79175 0.77787 0.75470 1.19321 1.19770 1.18512
1.67850 1.24245 1.09025 1.31130 0.94372 0.92783 0.88876 0.87760
0.89607 0.79594 0.75217 0.90599
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.40 9.89 71.98 0.71 -2.69 15
2 C -0.05 -1.46 6.37 29.85 0.19 -1.27 15
3 C 0.35 13.98 6.90 138.77 0.96 14.94 15
4 N -0.60 -22.95 10.33 -188.01 -1.94 -24.89 15
5 C 0.21 7.88 11.07 84.59 0.94 8.81 15
6 C -0.32 -13.36 6.29 22.64 0.14 -13.22 15
7 Br -0.05 -1.68 32.32 -20.37 -0.66 -2.34 15
8 C 0.37 17.84 7.46 133.18 0.99 18.84 15
9 N -0.52 -26.75 5.37 -188.61 -1.01 -27.76 15
10 C -0.32 -17.00 9.72 84.04 0.82 -16.18 15
11 H 0.11 5.85 7.11 -2.91 -0.02 5.83 15
12 C -0.02 -0.84 5.50 84.88 0.47 -0.37 15
13 N -0.91 -48.16 13.05 21.65 0.28 -47.88 15
14 Si 1.01 40.22 29.55 68.60 2.03 42.25 15
15 H -0.27 -10.40 7.11 99.48 0.71 -9.69 15
16 H -0.27 -10.49 7.11 99.48 0.71 -9.78 15
17 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15
18 N -0.59 -27.68 9.14 -185.30 -1.69 -29.37 15
19 H 0.04 1.13 8.14 -2.38 -0.02 1.11 15
20 H 0.05 1.40 8.14 -2.39 -0.02 1.38 15
21 H 0.09 1.77 8.14 -2.39 -0.02 1.75 15
22 H 0.10 2.61 8.14 -2.39 -0.02 2.59 15
23 H 0.09 2.49 8.14 -2.39 -0.02 2.47 15
24 H 0.19 5.35 8.06 -2.91 -0.02 5.32 15
25 H 0.41 21.31 6.43 -92.70 -0.60 20.71 15
26 H 0.28 13.98 8.31 -92.71 -0.77 13.21 15
Total: -1.00 -58.51 254.91 2.83 -55.68
By element:
Atomic # 1 Polarization: 24.83 SS G_CDS: 0.61 Total: 25.45 kcal
Atomic # 6 Polarization: 3.65 SS G_CDS: 5.22 Total: 8.87 kcal
Atomic # 7 Polarization: -125.53 SS G_CDS: -4.37 Total: -129.90 kcal
Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal
Atomic # 35 Polarization: -1.68 SS G_CDS: -0.66 Total: -2.34 kcal
Total: -58.51 2.83 -55.68 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260239800.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.712 kcal
(2) G-P(sol) polarization free energy of solvation -58.510 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.201 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.679 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.032 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds