Wall clock time and date at job start Mon Mar 30 2020 05:31:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.31821 * 119.06786 * 2 1
4 4 C 1.32523 * 121.03618 * 179.97438 * 3 2 1
5 5 C 1.50698 * 120.41321 * 180.02562 * 4 3 2
6 6 C 1.38270 * 119.18241 * 359.97438 * 4 3 2
7 7 Br 1.89100 * 120.84729 * 180.02562 * 6 4 3
8 8 C 1.39742 * 118.30086 * 0.27075 * 6 4 3
9 9 N 1.38545 * 120.54349 * 179.70356 * 8 6 4
10 10 C 1.36929 * 120.00062 * 180.02562 * 9 8 6
11 11 H 1.07998 * 120.00011 * 0.02562 * 10 9 8
12 12 C 1.38850 * 119.99576 * 180.02562 * 10 9 8
13 13 N 1.31530 * 120.00294 * 0.02562 * 12 10 9
14 14 Si 1.86802 * 119.99503 * 179.97438 * 12 10 9
15 15 H 1.48505 * 109.46948 * 60.00183 * 14 12 10
16 16 H 1.48504 * 109.46820 * 179.97438 * 14 12 10
17 17 H 1.48498 * 109.47300 * 299.99778 * 14 12 10
18 18 N 1.31711 * 119.06837 * 179.97438 * 2 1 3
19 19 H 1.08997 * 109.46657 * 90.00795 * 1 2 3
20 20 H 1.09001 * 109.47125 * 210.00629 * 1 2 3
21 21 H 1.08999 * 109.47387 * 330.00587 * 1 2 3
22 22 H 1.09003 * 109.47286 * 269.98307 * 5 4 3
23 23 H 1.09004 * 109.46928 * 29.97680 * 5 4 3
24 24 H 1.08999 * 109.47409 * 149.97353 * 5 4 3
25 25 H 0.96997 * 119.99820 * 0.02562 * 9 8 6
26 26 H 0.97002 * 120.00064 * 180.02562 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1474 1.1522 0.0000
4 6 3.4719 1.1977 0.0005
5 6 4.1897 2.5227 0.0011
6 6 4.1871 0.0144 0.0016
7 35 6.0781 0.0244 0.0031
8 6 3.4769 -1.1891 -0.0037
9 7 4.1466 -2.4019 -0.0091
10 6 3.4395 -3.5745 -0.0148
11 1 2.3598 -3.5539 -0.0155
12 6 4.1109 -4.7899 -0.0196
13 7 5.4259 -4.8149 -0.0182
14 14 3.1462 -6.3895 -0.0266
15 1 2.2916 -6.4468 -1.2398
16 1 4.0896 -7.5364 -0.0317
17 1 2.2907 -6.4570 1.1853
18 7 2.1469 -1.1512 0.0005
19 1 -0.3632 -0.0001 -1.0277
20 1 -0.3633 -0.8899 0.5139
21 1 -0.3634 0.8900 0.5137
22 1 4.3634 2.8423 -1.0265
23 1 3.5798 3.2661 0.5145
24 1 5.1449 2.4184 0.5156
25 1 5.1164 -2.4203 -0.0088
26 1 5.8949 -5.6640 -0.0219
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260527779.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:31:19
Heat of formation + Delta-G solvation = 38.197286 kcal
Electronic energy + Delta-G solvation = -13234.301912 eV
Core-core repulsion = 10779.873486 eV
Total energy + Delta-G solvation = -2454.428426 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 271.002 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-39.87658 -36.02316 -33.69126 -32.76417 -30.45897 -29.86550 -28.42980 -26.66839
-24.71836 -21.49801 -21.05032 -18.44998 -16.51948 -16.13494 -14.66539 -14.62186
-14.18257 -13.76491 -13.43138 -12.94431 -12.39785 -12.23364 -12.06212 -11.77168
-11.69461 -11.36432 -10.77441 -10.70057 -10.51370 -10.39279 -9.80065 -9.58783
-9.29112 -8.52258 -8.05889 -7.48871 -6.80987 -4.01976 1.83844 2.32390
2.50426 3.08167 3.11548 3.11676 3.88283 4.50908 4.54848 4.83847
5.03712 5.21486 5.73622 5.81398 5.92758 6.01074 6.07285 6.11688
6.26560 6.49918 6.58530 7.15641 7.27842 7.60903 8.06692 8.51943
8.97809 9.04701 9.51971 10.32941
Molecular weight = 271.00amu
Principal moments of inertia in cm(-1)
A = 0.020248 B = 0.009113 C = 0.006314
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1382.525055 B = 3071.729097 C = 4433.799114
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.359 3.641
3 N -0.610 5.610
4 C 0.233 3.767
5 C -0.105 4.105
6 C -0.307 4.307
7 Br -0.068 7.068
8 C 0.378 3.622
9 N -0.491 5.491
10 C -0.291 4.291
11 H 0.119 0.881
12 C 0.024 3.976
13 N -0.875 5.875
14 Si 0.943 3.057
15 H -0.268 1.268
16 H -0.280 1.280
17 H -0.268 1.268
18 N -0.571 5.571
19 H 0.075 0.925
20 H 0.077 0.923
21 H 0.076 0.924
22 H 0.077 0.923
23 H 0.075 0.925
24 H 0.077 0.923
25 H 0.414 0.586
26 H 0.282 0.718
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.501 7.799 0.014 7.815
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.087 3.913
3 N -0.339 5.339
4 C 0.090 3.910
5 C -0.163 4.163
6 C -0.402 4.402
7 Br 0.014 6.986
8 C 0.126 3.874
9 N -0.095 5.095
10 C -0.423 4.423
11 H 0.137 0.863
12 C -0.182 4.182
13 N -0.510 5.510
14 Si 0.769 3.231
15 H -0.193 1.193
16 H -0.205 1.205
17 H -0.193 1.193
18 N -0.300 5.300
19 H 0.094 0.906
20 H 0.096 0.904
21 H 0.094 0.906
22 H 0.096 0.904
23 H 0.094 0.906
24 H 0.096 0.904
25 H 0.253 0.747
26 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -0.538 7.235 0.018 7.255
hybrid contribution 0.708 -0.940 -0.042 1.178
sum 0.170 6.295 -0.024 6.297
Atomic orbital electron populations
1.20390 0.87253 1.02974 1.02809 1.22630 0.96914 0.83415 0.88303
1.68052 1.07537 1.29534 1.28767 1.20838 0.89576 0.93202 0.87336
1.20761 0.99735 0.92847 1.02951 1.22066 0.89309 0.96541 1.32244
1.96407 1.05008 1.98762 1.98394 1.17771 0.88099 0.85165 0.96318
1.41245 1.09088 1.01931 1.57264 1.20101 0.94005 0.81882 1.46288
0.86342 1.25574 0.95948 1.00550 0.96142 1.69674 1.06922 1.28979
1.45408 0.85701 0.78863 0.78993 0.79577 1.19289 1.20534 1.19279
1.67774 1.06759 1.29467 1.25995 0.90605 0.90404 0.90561 0.90397
0.90637 0.90436 0.74688 0.90789
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.18 10.32 36.00 0.37 -0.81 15
2 C 0.36 7.52 7.64 -157.24 -1.20 6.32 15
3 N -0.61 -12.61 10.27 -7.04 -0.07 -12.68 15
4 C 0.23 4.68 6.82 -82.28 -0.56 4.12 15
5 C -0.11 -1.62 9.79 36.00 0.35 -1.26 15
6 C -0.31 -6.70 6.29 -39.01 -0.25 -6.95 15
7 Br -0.07 -1.28 30.54 -68.01 -2.08 -3.36 15
8 C 0.38 9.26 7.46 -154.68 -1.15 8.11 15
9 N -0.49 -12.62 5.37 -10.96 -0.06 -12.68 15
10 C -0.29 -7.65 9.72 -15.05 -0.15 -7.79 15
11 H 0.12 3.11 7.11 -52.49 -0.37 2.74 15
12 C 0.02 0.61 5.50 -17.45 -0.10 0.52 15
13 N -0.87 -22.79 13.05 55.49 0.72 -22.07 15
14 Si 0.94 19.54 29.55 -169.99 -5.02 14.52 15
15 H -0.27 -5.49 7.11 56.52 0.40 -5.08 15
16 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15
17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15
18 N -0.57 -13.61 9.14 -9.92 -0.09 -13.70 15
19 H 0.08 1.07 8.14 -51.93 -0.42 0.65 15
20 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15
21 H 0.08 1.05 8.14 -51.93 -0.42 0.62 15
22 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15
23 H 0.07 1.05 8.14 -51.93 -0.42 0.63 15
24 H 0.08 1.12 6.76 -51.93 -0.35 0.77 15
25 H 0.41 10.61 6.43 -40.82 -0.26 10.34 15
26 H 0.28 6.86 8.31 -40.82 -0.34 6.52 15
LS Contribution 252.11 15.07 3.80 3.80
Total: -1.00 -27.99 252.11 -7.71 -35.70
By element:
Atomic # 1 Polarization: 10.46 SS G_CDS: -2.24 Total: 8.23 kcal
Atomic # 6 Polarization: 4.93 SS G_CDS: -2.68 Total: 2.25 kcal
Atomic # 7 Polarization: -61.64 SS G_CDS: 0.50 Total: -61.14 kcal
Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal
Atomic # 35 Polarization: -1.28 SS G_CDS: -2.08 Total: -3.36 kcal
Total LS contribution 3.80 Total: 3.80 kcal
Total: -27.99 -7.71 -35.70 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260527779.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.901 kcal
(2) G-P(sol) polarization free energy of solvation -27.989 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.912 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.704 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.197 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds