Wall clock time and date at job start Mon Mar 30 2020 05:31:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 N 1.31821 * 119.06786 * 2 1
4 4 C 1.32523 * 121.03618 * 179.97438 * 3 2 1
5 5 C 1.50698 * 120.41321 * 180.02562 * 4 3 2
6 6 C 1.38270 * 119.18241 * 359.97438 * 4 3 2
7 7 Br 1.89100 * 120.84729 * 180.02562 * 6 4 3
8 8 C 1.39742 * 118.30086 * 0.27075 * 6 4 3
9 9 N 1.38545 * 120.54349 * 179.70356 * 8 6 4
10 10 C 1.36929 * 120.00062 * 180.02562 * 9 8 6
11 11 H 1.07998 * 120.00011 * 0.02562 * 10 9 8
12 12 C 1.38850 * 119.99576 * 180.02562 * 10 9 8
13 13 N 1.31530 * 120.00294 * 0.02562 * 12 10 9
14 14 Si 1.86802 * 119.99503 * 179.97438 * 12 10 9
15 15 H 1.48505 * 109.46948 * 60.00183 * 14 12 10
16 16 H 1.48504 * 109.46820 * 179.97438 * 14 12 10
17 17 H 1.48498 * 109.47300 * 299.99778 * 14 12 10
18 18 N 1.31711 * 119.06837 * 179.97438 * 2 1 3
19 19 H 1.08997 * 109.46657 * 90.00795 * 1 2 3
20 20 H 1.09001 * 109.47125 * 210.00629 * 1 2 3
21 21 H 1.08999 * 109.47387 * 330.00587 * 1 2 3
22 22 H 1.09003 * 109.47286 * 269.98307 * 5 4 3
23 23 H 1.09004 * 109.46928 * 29.97680 * 5 4 3
24 24 H 1.08999 * 109.47409 * 149.97353 * 5 4 3
25 25 H 0.96997 * 119.99820 * 0.02562 * 9 8 6
26 26 H 0.97002 * 120.00064 * 180.02562 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1474 1.1522 0.0000
4 6 3.4719 1.1977 0.0005
5 6 4.1897 2.5227 0.0011
6 6 4.1871 0.0144 0.0016
7 35 6.0781 0.0244 0.0031
8 6 3.4769 -1.1891 -0.0037
9 7 4.1466 -2.4019 -0.0091
10 6 3.4395 -3.5745 -0.0148
11 1 2.3598 -3.5539 -0.0155
12 6 4.1109 -4.7899 -0.0196
13 7 5.4259 -4.8149 -0.0182
14 14 3.1462 -6.3895 -0.0266
15 1 2.2916 -6.4468 -1.2398
16 1 4.0896 -7.5364 -0.0317
17 1 2.2907 -6.4570 1.1853
18 7 2.1469 -1.1512 0.0005
19 1 -0.3632 -0.0001 -1.0277
20 1 -0.3633 -0.8899 0.5139
21 1 -0.3634 0.8900 0.5137
22 1 4.3634 2.8423 -1.0265
23 1 3.5798 3.2661 0.5145
24 1 5.1449 2.4184 0.5156
25 1 5.1164 -2.4203 -0.0088
26 1 5.8949 -5.6640 -0.0219
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260527779.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:31:19
Heat of formation + Delta-G solvation = 21.721278 kcal
Electronic energy + Delta-G solvation = -13235.016365 eV
Core-core repulsion = 10779.873486 eV
Total energy + Delta-G solvation = -2455.142880 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 271.002 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-41.58426 -37.81046 -35.26171 -34.56418 -32.20655 -31.43605 -29.81122 -28.31629
-26.50261 -23.19999 -22.65941 -20.26793 -18.28708 -17.86152 -16.41620 -16.25241
-15.87234 -15.45681 -14.99180 -14.20877 -13.97838 -13.70654 -13.60014 -13.26088
-12.99028 -12.96178 -12.62272 -12.26359 -12.14017 -11.96401 -11.47806 -11.17350
-11.05801 -10.23381 -9.78488 -9.25180 -8.65025 -5.96558 0.17489 0.59446
0.84949 1.39772 1.49265 1.51971 2.18648 2.76681 2.80159 3.22437
3.34954 3.65707 4.14240 4.34382 4.54139 4.75545 4.80277 4.85000
4.96688 5.07832 5.22346 5.28646 5.52615 5.88093 6.30765 6.65757
7.12059 7.24583 7.74229 8.50617
Molecular weight = 271.00amu
Principal moments of inertia in cm(-1)
A = 0.020248 B = 0.009113 C = 0.006314
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1382.525055 B = 3071.729097 C = 4433.799114
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 C 0.349 3.651
3 N -0.605 5.605
4 C 0.231 3.769
5 C -0.101 4.101
6 C -0.328 4.328
7 Br -0.043 7.043
8 C 0.373 3.627
9 N -0.516 5.516
10 C -0.320 4.320
11 H 0.109 0.891
12 C -0.016 4.016
13 N -0.911 5.911
14 Si 1.008 2.992
15 H -0.264 1.264
16 H -0.273 1.273
17 H -0.264 1.264
18 N -0.602 5.602
19 H 0.095 0.905
20 H 0.082 0.918
21 H 0.099 0.901
22 H 0.097 0.903
23 H 0.094 0.906
24 H 0.086 0.914
25 H 0.409 0.591
26 H 0.284 0.716
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.369 9.083 -0.039 9.185
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.078 3.922
3 N -0.332 5.332
4 C 0.087 3.913
5 C -0.158 4.158
6 C -0.421 4.421
7 Br 0.040 6.960
8 C 0.122 3.878
9 N -0.123 5.123
10 C -0.451 4.451
11 H 0.126 0.874
12 C -0.219 4.219
13 N -0.547 5.547
14 Si 0.830 3.170
15 H -0.189 1.189
16 H -0.198 1.198
17 H -0.189 1.189
18 N -0.332 5.332
19 H 0.113 0.887
20 H 0.101 0.899
21 H 0.118 0.882
22 H 0.116 0.884
23 H 0.113 0.887
24 H 0.104 0.896
25 H 0.247 0.753
26 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -1.436 8.573 -0.034 8.693
hybrid contribution 0.932 -1.025 -0.027 1.386
sum -0.504 7.548 -0.061 7.565
Atomic orbital electron populations
1.20557 0.83668 1.04377 1.04419 1.23674 0.99139 0.82780 0.86558
1.68229 1.07931 1.29249 1.27833 1.21653 0.89607 0.94652 0.85384
1.20880 0.99840 0.90534 1.04565 1.22373 0.91162 0.96295 1.32263
1.96405 1.02535 1.98721 1.98370 1.18314 0.88974 0.85818 0.94680
1.41226 1.08752 1.02217 1.60130 1.20160 0.93750 0.82872 1.48295
0.87364 1.26408 0.96816 1.03158 0.95482 1.69751 1.08118 1.29698
1.47174 0.84753 0.77573 0.75141 0.79552 1.18913 1.19759 1.18909
1.67859 1.06851 1.31112 1.27370 0.88697 0.89901 0.88225 0.88428
0.88725 0.89568 0.75258 0.90600
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -2.08 10.32 71.24 0.73 -1.34 15
2 C 0.35 14.10 7.64 138.77 1.06 15.16 15
3 N -0.61 -23.67 10.27 -176.19 -1.81 -25.48 15
4 C 0.23 8.79 6.82 42.46 0.29 9.08 15
5 C -0.10 -2.77 9.79 71.24 0.70 -2.07 15
6 C -0.33 -14.05 6.29 22.64 0.14 -13.90 15
7 Br -0.04 -1.58 30.54 -20.37 -0.62 -2.20 15
8 C 0.37 18.41 7.46 133.17 0.99 19.41 15
9 N -0.52 -27.26 5.37 -188.60 -1.01 -28.27 15
10 C -0.32 -17.31 9.72 84.04 0.82 -16.49 15
11 H 0.11 5.88 7.11 -2.91 -0.02 5.86 15
12 C -0.02 -0.84 5.50 84.88 0.47 -0.38 15
13 N -0.91 -48.61 13.05 21.65 0.28 -48.33 15
14 Si 1.01 40.53 29.55 68.60 2.03 42.56 15
15 H -0.26 -10.34 7.11 99.48 0.71 -9.64 15
16 H -0.27 -10.50 7.11 99.48 0.71 -9.80 15
17 H -0.26 -10.34 7.11 99.48 0.71 -9.64 15
18 N -0.60 -28.68 9.14 -185.31 -1.69 -30.37 15
19 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15
20 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15
21 H 0.10 2.41 8.14 -2.39 -0.02 2.39 15
22 H 0.10 2.36 8.14 -2.39 -0.02 2.34 15
23 H 0.09 2.27 8.14 -2.38 -0.02 2.25 15
24 H 0.09 2.23 6.76 -2.39 -0.02 2.22 15
25 H 0.41 21.61 6.43 -92.71 -0.60 21.01 15
26 H 0.28 14.11 8.31 -92.71 -0.77 13.34 15
Total: -1.00 -60.60 252.11 2.99 -57.60
By element:
Atomic # 1 Polarization: 24.41 SS G_CDS: 0.62 Total: 25.03 kcal
Atomic # 6 Polarization: 4.26 SS G_CDS: 5.20 Total: 9.46 kcal
Atomic # 7 Polarization: -128.22 SS G_CDS: -4.23 Total: -132.45 kcal
Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal
Atomic # 35 Polarization: -1.58 SS G_CDS: -0.62 Total: -2.20 kcal
Total: -60.60 2.99 -57.60 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260527779.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.326 kcal
(2) G-P(sol) polarization free energy of solvation -60.599 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.728 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.605 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.721 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds