Wall clock time and date at job start Mon Mar 30 2020 05:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31821 * 119.06786 * 2 1 4 4 C 1.32523 * 121.03618 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.41321 * 180.02562 * 4 3 2 6 6 C 1.38270 * 119.18241 * 359.97438 * 4 3 2 7 7 Br 1.89100 * 120.84729 * 180.02562 * 6 4 3 8 8 C 1.39742 * 118.30086 * 0.27075 * 6 4 3 9 9 N 1.38545 * 120.54349 * 179.70356 * 8 6 4 10 10 C 1.36929 * 120.00062 * 180.02562 * 9 8 6 11 11 H 1.07998 * 120.00011 * 0.02562 * 10 9 8 12 12 C 1.38850 * 119.99576 * 180.02562 * 10 9 8 13 13 N 1.31530 * 120.00294 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99503 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46948 * 60.00183 * 14 12 10 16 16 H 1.48504 * 109.46820 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47300 * 299.99778 * 14 12 10 18 18 N 1.31711 * 119.06837 * 179.97438 * 2 1 3 19 19 H 1.08997 * 109.46657 * 90.00795 * 1 2 3 20 20 H 1.09001 * 109.47125 * 210.00629 * 1 2 3 21 21 H 1.08999 * 109.47387 * 330.00587 * 1 2 3 22 22 H 1.09003 * 109.47286 * 269.98307 * 5 4 3 23 23 H 1.09004 * 109.46928 * 29.97680 * 5 4 3 24 24 H 1.08999 * 109.47409 * 149.97353 * 5 4 3 25 25 H 0.96997 * 119.99820 * 0.02562 * 9 8 6 26 26 H 0.97002 * 120.00064 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1474 1.1522 0.0000 4 6 3.4719 1.1977 0.0005 5 6 4.1897 2.5227 0.0011 6 6 4.1871 0.0144 0.0016 7 35 6.0781 0.0244 0.0031 8 6 3.4769 -1.1891 -0.0037 9 7 4.1466 -2.4019 -0.0091 10 6 3.4395 -3.5745 -0.0148 11 1 2.3598 -3.5539 -0.0155 12 6 4.1109 -4.7899 -0.0196 13 7 5.4259 -4.8149 -0.0182 14 14 3.1462 -6.3895 -0.0266 15 1 2.2916 -6.4468 -1.2398 16 1 4.0896 -7.5364 -0.0317 17 1 2.2907 -6.4570 1.1853 18 7 2.1469 -1.1512 0.0005 19 1 -0.3632 -0.0001 -1.0277 20 1 -0.3633 -0.8899 0.5139 21 1 -0.3634 0.8900 0.5137 22 1 4.3634 2.8423 -1.0265 23 1 3.5798 3.2661 0.5145 24 1 5.1449 2.4184 0.5156 25 1 5.1164 -2.4203 -0.0088 26 1 5.8949 -5.6640 -0.0219 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260527779.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:19 Heat of formation + Delta-G solvation = 21.721278 kcal Electronic energy + Delta-G solvation = -13235.016365 eV Core-core repulsion = 10779.873486 eV Total energy + Delta-G solvation = -2455.142880 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.002 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.58426 -37.81046 -35.26171 -34.56418 -32.20655 -31.43605 -29.81122 -28.31629 -26.50261 -23.19999 -22.65941 -20.26793 -18.28708 -17.86152 -16.41620 -16.25241 -15.87234 -15.45681 -14.99180 -14.20877 -13.97838 -13.70654 -13.60014 -13.26088 -12.99028 -12.96178 -12.62272 -12.26359 -12.14017 -11.96401 -11.47806 -11.17350 -11.05801 -10.23381 -9.78488 -9.25180 -8.65025 -5.96558 0.17489 0.59446 0.84949 1.39772 1.49265 1.51971 2.18648 2.76681 2.80159 3.22437 3.34954 3.65707 4.14240 4.34382 4.54139 4.75545 4.80277 4.85000 4.96688 5.07832 5.22346 5.28646 5.52615 5.88093 6.30765 6.65757 7.12059 7.24583 7.74229 8.50617 Molecular weight = 271.00amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.009113 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.525055 B = 3071.729097 C = 4433.799114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.349 3.651 3 N -0.605 5.605 4 C 0.231 3.769 5 C -0.101 4.101 6 C -0.328 4.328 7 Br -0.043 7.043 8 C 0.373 3.627 9 N -0.516 5.516 10 C -0.320 4.320 11 H 0.109 0.891 12 C -0.016 4.016 13 N -0.911 5.911 14 Si 1.008 2.992 15 H -0.264 1.264 16 H -0.273 1.273 17 H -0.264 1.264 18 N -0.602 5.602 19 H 0.095 0.905 20 H 0.082 0.918 21 H 0.099 0.901 22 H 0.097 0.903 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.409 0.591 26 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.369 9.083 -0.039 9.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.078 3.922 3 N -0.332 5.332 4 C 0.087 3.913 5 C -0.158 4.158 6 C -0.421 4.421 7 Br 0.040 6.960 8 C 0.122 3.878 9 N -0.123 5.123 10 C -0.451 4.451 11 H 0.126 0.874 12 C -0.219 4.219 13 N -0.547 5.547 14 Si 0.830 3.170 15 H -0.189 1.189 16 H -0.198 1.198 17 H -0.189 1.189 18 N -0.332 5.332 19 H 0.113 0.887 20 H 0.101 0.899 21 H 0.118 0.882 22 H 0.116 0.884 23 H 0.113 0.887 24 H 0.104 0.896 25 H 0.247 0.753 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.436 8.573 -0.034 8.693 hybrid contribution 0.932 -1.025 -0.027 1.386 sum -0.504 7.548 -0.061 7.565 Atomic orbital electron populations 1.20557 0.83668 1.04377 1.04419 1.23674 0.99139 0.82780 0.86558 1.68229 1.07931 1.29249 1.27833 1.21653 0.89607 0.94652 0.85384 1.20880 0.99840 0.90534 1.04565 1.22373 0.91162 0.96295 1.32263 1.96405 1.02535 1.98721 1.98370 1.18314 0.88974 0.85818 0.94680 1.41226 1.08752 1.02217 1.60130 1.20160 0.93750 0.82872 1.48295 0.87364 1.26408 0.96816 1.03158 0.95482 1.69751 1.08118 1.29698 1.47174 0.84753 0.77573 0.75141 0.79552 1.18913 1.19759 1.18909 1.67859 1.06851 1.31112 1.27370 0.88697 0.89901 0.88225 0.88428 0.88725 0.89568 0.75258 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.08 10.32 71.24 0.73 -1.34 15 2 C 0.35 14.10 7.64 138.77 1.06 15.16 15 3 N -0.61 -23.67 10.27 -176.19 -1.81 -25.48 15 4 C 0.23 8.79 6.82 42.46 0.29 9.08 15 5 C -0.10 -2.77 9.79 71.24 0.70 -2.07 15 6 C -0.33 -14.05 6.29 22.64 0.14 -13.90 15 7 Br -0.04 -1.58 30.54 -20.37 -0.62 -2.20 15 8 C 0.37 18.41 7.46 133.17 0.99 19.41 15 9 N -0.52 -27.26 5.37 -188.60 -1.01 -28.27 15 10 C -0.32 -17.31 9.72 84.04 0.82 -16.49 15 11 H 0.11 5.88 7.11 -2.91 -0.02 5.86 15 12 C -0.02 -0.84 5.50 84.88 0.47 -0.38 15 13 N -0.91 -48.61 13.05 21.65 0.28 -48.33 15 14 Si 1.01 40.53 29.55 68.60 2.03 42.56 15 15 H -0.26 -10.34 7.11 99.48 0.71 -9.64 15 16 H -0.27 -10.50 7.11 99.48 0.71 -9.80 15 17 H -0.26 -10.34 7.11 99.48 0.71 -9.64 15 18 N -0.60 -28.68 9.14 -185.31 -1.69 -30.37 15 19 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15 20 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 21 H 0.10 2.41 8.14 -2.39 -0.02 2.39 15 22 H 0.10 2.36 8.14 -2.39 -0.02 2.34 15 23 H 0.09 2.27 8.14 -2.38 -0.02 2.25 15 24 H 0.09 2.23 6.76 -2.39 -0.02 2.22 15 25 H 0.41 21.61 6.43 -92.71 -0.60 21.01 15 26 H 0.28 14.11 8.31 -92.71 -0.77 13.34 15 Total: -1.00 -60.60 252.11 2.99 -57.60 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.62 Total: 25.03 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 5.20 Total: 9.46 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -4.23 Total: -132.45 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Atomic # 35 Polarization: -1.58 SS G_CDS: -0.62 Total: -2.20 kcal Total: -60.60 2.99 -57.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260527779.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.326 kcal (2) G-P(sol) polarization free energy of solvation -60.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds