Wall clock time and date at job start Mon Mar 30 2020 05:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00137 * 2 1 4 4 H 1.48502 * 109.47162 * 269.99626 * 3 2 1 5 5 H 1.48499 * 109.47427 * 29.99554 * 3 2 1 6 6 H 1.48497 * 109.47175 * 149.99777 * 3 2 1 7 7 C 1.37878 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00002 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99880 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.41872 * 300.07307 * 9 7 2 11 11 C 1.53129 * 109.44741 * 180.15188 * 9 7 2 12 12 C 1.53464 * 109.36036 * 170.35454 * 11 9 7 13 13 C 1.50788 * 108.10521 * 48.78353 * 12 11 9 14 14 N 1.29760 * 128.68372 * 163.83463 * 13 12 11 15 15 N 1.28882 * 109.66413 * 180.02562 * 14 13 12 16 16 C 1.30952 * 109.89996 * 0.31263 * 15 14 13 17 17 Br 1.89102 * 126.52042 * 179.74391 * 16 15 14 18 18 N 1.35235 * 106.96000 * 359.75601 * 16 15 14 19 19 C 1.46214 * 129.04614 * 180.15126 * 18 16 15 20 20 H 0.97001 * 119.99738 * 0.02562 * 1 2 3 21 21 H 1.09006 * 109.48885 * 290.30708 * 11 9 7 22 22 H 1.09000 * 109.48952 * 50.37868 * 11 9 7 23 23 H 1.09000 * 109.71021 * 289.14892 * 12 11 9 24 24 H 1.08991 * 109.75249 * 168.45133 * 12 11 9 25 25 H 1.08994 * 109.60435 * 282.67161 * 19 18 16 26 26 H 1.09002 * 109.59855 * 43.14868 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6234 -2.5553 0.8899 11 6 2.2466 -3.6627 0.0050 12 6 1.4921 -4.9769 0.2476 13 6 0.3135 -5.0208 -0.6918 14 7 -0.4154 -6.0393 -1.0315 15 7 -1.3281 -5.6624 -1.8597 16 6 -1.2168 -4.3784 -2.0918 17 35 -2.3083 -3.3431 -3.2375 18 7 -0.1726 -3.9337 -1.3564 19 6 0.3702 -2.5801 -1.2520 20 1 -0.4850 0.8401 -0.0004 21 1 2.7566 -3.7086 -0.9573 22 1 2.9788 -3.5117 0.7982 23 1 1.1422 -5.0148 1.2792 24 1 2.1516 -5.8219 0.0506 25 1 0.9689 -2.3570 -2.1350 26 1 -0.4472 -1.8636 -1.1710 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261008878.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:58 Heat of formation + Delta-G solvation = 50.709932 kcal Electronic energy + Delta-G solvation = -13661.650826 eV Core-core repulsion = 11207.764988 eV Total energy + Delta-G solvation = -2453.885837 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.002 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.28033 -38.42941 -34.93482 -34.69675 -32.81537 -31.55208 -29.61202 -27.25358 -24.91481 -23.34024 -23.03790 -20.41709 -18.53920 -17.90852 -17.48500 -16.47802 -16.10261 -15.33455 -15.02138 -14.74025 -14.62512 -13.48629 -13.33046 -12.96617 -12.80212 -12.62964 -12.42003 -12.28569 -12.08869 -11.70401 -11.50816 -11.28220 -11.18359 -11.05674 -10.55108 -10.11216 -8.22392 -6.35587 -0.31063 0.55239 1.44068 1.48515 1.55109 1.56454 1.70746 2.40817 3.09159 3.28579 3.75602 3.94237 4.12830 4.23824 4.47682 4.58342 4.78224 4.84363 4.92310 5.04938 5.21702 5.45334 5.56729 5.67902 5.81187 6.17050 6.75322 7.35954 7.39905 8.84323 Molecular weight = 271.00amu Principal moments of inertia in cm(-1) A = 0.022306 B = 0.008471 C = 0.006327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.950531 B = 3304.452862 C = 4424.368074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.020 3.980 3 Si 0.957 3.043 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.012 0.988 11 C -0.109 4.109 12 C -0.030 4.030 13 C 0.198 3.802 14 N -0.320 5.320 15 N -0.291 5.291 16 C 0.143 3.857 17 Br 0.097 6.903 18 N -0.448 5.448 19 C 0.112 3.888 20 H 0.266 0.734 21 H 0.062 0.938 22 H 0.093 0.907 23 H 0.105 0.895 24 H 0.124 0.876 25 H 0.074 0.926 26 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 -3.773 -4.163 5.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.180 4.180 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.090 0.910 9 C 0.017 3.983 10 H 0.030 0.970 11 C -0.147 4.147 12 C -0.069 4.069 13 C -0.071 4.071 14 N -0.162 5.162 15 N -0.136 5.136 16 C -0.202 4.202 17 Br 0.177 6.823 18 N -0.138 5.138 19 C -0.009 4.009 20 H 0.076 0.924 21 H 0.080 0.920 22 H 0.112 0.888 23 H 0.123 0.877 24 H 0.142 0.858 25 H 0.092 0.908 26 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.198 -4.629 -4.652 6.672 hybrid contribution 0.527 2.171 0.136 2.239 sum -0.671 -2.458 -4.516 5.185 Atomic orbital electron populations 1.69919 1.07243 1.27996 1.50329 1.25753 0.95587 1.02620 0.94030 0.85549 0.78818 0.79083 0.78245 1.20156 1.21509 1.18917 1.21355 0.93708 0.90142 1.51472 0.90971 1.19000 0.93093 0.94939 0.91261 0.96969 1.21735 0.98209 0.91814 1.02963 1.20560 0.89569 1.00916 0.95897 1.25678 1.00380 0.82349 0.98701 1.73895 1.04715 1.24921 1.12640 1.74459 1.18272 1.07291 1.13574 1.26585 0.95885 0.94439 1.03265 1.96767 1.61977 1.65984 1.57603 1.47027 1.22441 1.12894 1.31433 1.22730 1.00185 0.75935 1.02054 0.92442 0.91966 0.88824 0.87695 0.85831 0.90809 0.88030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.00 11.45 21.45 0.25 -46.75 15 2 C 0.02 0.99 5.30 84.65 0.45 1.44 15 3 Si 0.96 38.79 29.54 68.60 2.03 40.81 15 4 H -0.28 -11.00 7.11 99.48 0.71 -10.30 15 5 H -0.29 -11.86 7.11 99.48 0.71 -11.16 15 6 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15 7 C -0.53 -24.72 8.53 25.60 0.22 -24.51 15 8 H 0.07 3.24 7.74 -2.91 -0.02 3.22 15 9 C 0.04 1.55 2.11 -11.38 -0.02 1.53 15 10 H 0.01 0.59 8.12 -2.39 -0.02 0.57 15 11 C -0.11 -3.62 5.19 30.79 0.16 -3.46 15 12 C -0.03 -0.90 6.34 30.03 0.19 -0.71 15 13 C 0.20 7.58 7.77 137.94 1.07 8.65 15 14 N -0.32 -13.21 12.19 -49.94 -0.61 -13.82 15 15 N -0.29 -12.32 12.23 -55.83 -0.68 -13.01 15 16 C 0.14 5.74 8.59 180.07 1.55 7.28 15 17 Br 0.10 3.16 33.97 -20.37 -0.69 2.47 15 18 N -0.45 -18.23 3.14 -512.32 -1.61 -19.84 15 19 C 0.11 4.75 5.79 86.55 0.50 5.25 15 20 H 0.27 13.17 8.31 -92.71 -0.77 12.40 15 21 H 0.06 2.01 8.12 -2.38 -0.02 2.00 15 22 H 0.09 2.81 8.11 -2.39 -0.02 2.79 15 23 H 0.10 2.90 8.14 -2.39 -0.02 2.88 15 24 H 0.12 2.93 8.14 -2.39 -0.02 2.91 15 25 H 0.07 3.12 8.12 -2.39 -0.02 3.10 15 26 H 0.10 4.83 6.42 -2.39 -0.02 4.81 15 Total: -1.00 -55.09 244.67 3.99 -51.11 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: 1.20 Total: 3.56 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 4.11 Total: -4.52 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -2.66 Total: -93.42 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.81 kcal Atomic # 35 Polarization: 3.16 SS G_CDS: -0.69 Total: 2.47 kcal Total: -55.09 3.99 -51.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261008878.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.817 kcal (2) G-P(sol) polarization free energy of solvation -55.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds