Wall clock time and date at job start Mon Mar 30 2020 05:30:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30680 * 1
3 3 Si 1.86806 * 119.99871 * 2 1
4 4 H 1.48507 * 109.46715 * 95.01411 * 3 2 1
5 5 H 1.48496 * 109.47031 * 215.01219 * 3 2 1
6 6 H 1.48500 * 109.47273 * 335.01764 * 3 2 1
7 7 C 1.40243 * 120.00128 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99823 * 173.96841 * 7 2 1
9 9 C 1.40122 * 120.00092 * 353.96723 * 7 2 1
10 10 N 1.33321 * 126.77598 * 5.36771 * 9 7 2
11 11 N 1.28846 * 109.42183 * 179.78658 * 10 9 7
12 12 C 1.30744 * 110.05754 * 0.43268 * 11 10 9
13 13 N 1.35527 * 107.82519 * 359.79641 * 12 11 10
14 14 C 1.46232 * 124.98881 * 179.82742 * 13 12 11
15 15 C 1.53322 * 108.72504 * 343.02237 * 14 13 12
16 16 H 1.08990 * 109.46036 * 290.18388 * 15 14 13
17 17 Br 1.96603 * 109.45846 * 170.22288 * 15 14 13
18 18 C 1.53154 * 109.53841 * 50.20695 * 15 14 13
19 19 C 1.50893 * 128.21773 * 179.83957 * 12 11 10
20 20 H 0.96999 * 120.00469 * 359.97438 * 1 2 3
21 21 H 1.09002 * 109.58729 * 102.79130 * 14 13 12
22 22 H 1.09001 * 109.59593 * 223.09432 * 14 13 12
23 23 H 1.09003 * 109.49713 * 50.54938 * 18 15 14
24 24 H 1.08997 * 109.49690 * 170.61293 * 18 15 14
25 25 H 1.08999 * 109.72391 * 44.38153 * 19 12 11
26 26 H 1.09006 * 109.71943 * 283.72032 * 19 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3068 0.0000 0.0000
3 14 2.2408 1.6178 0.0000
4 1 2.5942 1.9852 1.3948
5 1 3.4813 1.4732 -0.8033
6 1 1.3892 2.6810 -0.5913
7 6 2.0080 -1.2145 -0.0005
8 1 3.0836 -1.2170 -0.0988
9 6 1.3133 -2.4247 0.1264
10 7 -0.0098 -2.5863 0.1556
11 7 -0.2858 -3.8389 0.2781
12 6 0.8177 -4.5370 0.3427
13 7 1.8597 -3.6753 0.2513
14 6 3.2705 -4.0587 0.2865
15 6 3.3809 -5.4772 0.8579
16 1 3.1313 -5.4618 1.9187
17 35 5.2192 -6.1349 0.6272
18 6 2.4110 -6.4040 0.1189
19 6 0.9699 -6.0310 0.4907
20 1 -0.4851 0.8400 0.0004
21 1 3.6800 -4.0385 -0.7234
22 1 3.8226 -3.3635 0.9189
23 1 2.5497 -6.2928 -0.9565
24 1 2.6054 -7.4374 0.4059
25 1 0.2743 -6.5395 -0.1768
26 1 0.7692 -6.3207 1.5223
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000261011813.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:30:05
Heat of formation + Delta-G solvation = 59.644200 kcal
Electronic energy + Delta-G solvation = -13567.796741 eV
Core-core repulsion = 11114.298323 eV
Total energy + Delta-G solvation = -2453.498418 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 271.002 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-41.09143 -36.50631 -33.71788 -32.35057 -31.00114 -28.70490 -28.11697 -25.53876
-23.48773 -21.58343 -20.65668 -18.63656 -17.28997 -15.72497 -15.20903 -14.74395
-14.11242 -14.01090 -13.64073 -13.22698 -13.09276 -11.80143 -11.60368 -11.33848
-11.27622 -11.11384 -10.87054 -10.79314 -10.36324 -9.96681 -9.88605 -9.56995
-9.41756 -8.63091 -8.32533 -7.58060 -6.61762 -4.58510 1.51586 2.95631
3.07906 3.10888 3.46865 3.83424 4.06331 4.47582 4.48205 4.58565
5.01066 5.25682 5.34306 5.39732 5.64159 5.75584 5.86814 5.94706
6.13333 6.26449 6.94108 7.00995 7.28171 7.61005 8.12837 8.22809
8.75327 8.90230 10.31680 10.75962
Molecular weight = 271.00amu
Principal moments of inertia in cm(-1)
A = 0.027246 B = 0.006669 C = 0.005407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1027.433642 B = 4197.721393 C = 5176.925820
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.737 5.737
2 C 0.081 3.919
3 Si 0.917 3.083
4 H -0.268 1.268
5 H -0.263 1.263
6 H -0.276 1.276
7 C -0.454 4.454
8 H 0.082 0.918
9 C 0.343 3.657
10 N -0.344 5.344
11 N -0.294 5.294
12 C 0.056 3.944
13 N -0.523 5.523
14 C 0.137 3.863
15 C -0.049 4.049
16 H 0.112 0.888
17 Br -0.156 7.156
18 C -0.114 4.114
19 C -0.008 4.008
20 H 0.279 0.721
21 H 0.075 0.925
22 H 0.087 0.913
23 H 0.077 0.923
24 H 0.082 0.918
25 H 0.085 0.915
26 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.729 -10.141 1.406 14.830
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.361 5.361
2 C -0.145 4.145
3 Si 0.741 3.259
4 H -0.193 1.193
5 H -0.187 1.187
6 H -0.201 1.201
7 C -0.494 4.494
8 H 0.100 0.900
9 C 0.099 3.901
10 N -0.189 5.189
11 N -0.135 5.135
12 C -0.208 4.208
13 N -0.225 5.225
14 C 0.011 3.989
15 C -0.146 4.146
16 H 0.130 0.870
17 Br -0.075 7.075
18 C -0.153 4.153
19 C -0.049 4.049
20 H 0.090 0.910
21 H 0.093 0.907
22 H 0.105 0.895
23 H 0.096 0.904
24 H 0.101 0.899
25 H 0.104 0.896
26 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 9.620 -9.928 1.305 13.886
hybrid contribution 1.582 0.656 0.103 1.716
sum 11.202 -9.272 1.408 14.610
Atomic orbital electron populations
1.69949 1.07089 1.28628 1.30476 1.25771 0.94841 1.00588 0.93268
0.86191 0.80003 0.80359 0.79321 1.19338 1.18717 1.20056 1.18138
0.94152 0.87424 1.49711 0.90013 1.21460 0.89734 0.83702 0.95175
1.75852 1.08689 1.04249 1.30138 1.73870 1.23391 1.00986 1.15212
1.23588 0.85527 0.93783 1.17948 1.45820 1.04907 1.07981 1.63753
1.21496 0.82928 0.92700 1.01808 1.24897 0.87387 0.97485 1.04783
0.87008 1.97359 1.22638 1.89018 1.98505 1.21896 0.93908 0.98433
1.01053 1.19746 0.94954 0.88155 1.02033 0.91009 0.90687 0.89480
0.90421 0.89945 0.89608 0.90863
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.74 -20.42 11.98 55.56 0.67 -19.75 15
2 C 0.08 2.07 5.49 -17.29 -0.09 1.98 15
3 Si 0.92 18.64 29.57 -169.99 -5.03 13.61 15
4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15
5 H -0.26 -5.18 7.11 56.52 0.40 -4.78 15
6 H -0.28 -5.49 7.11 56.52 0.40 -5.09 15
7 C -0.45 -12.05 9.17 -38.12 -0.35 -12.40 15
8 H 0.08 1.98 7.82 -52.49 -0.41 1.57 15
9 C 0.34 9.49 7.55 -155.73 -1.18 8.32 15
10 N -0.34 -10.37 10.58 31.11 0.33 -10.04 15
11 N -0.29 -8.09 12.21 32.89 0.40 -7.69 15
12 C 0.06 1.29 7.76 -154.68 -1.20 0.09 15
13 N -0.52 -12.04 3.17 -113.04 -0.36 -12.40 15
14 C 0.14 2.40 6.13 -4.02 -0.02 2.37 15
15 C -0.05 -0.68 3.20 -26.48 -0.08 -0.77 15
16 H 0.11 1.54 8.12 -51.93 -0.42 1.12 15
17 Br -0.16 -1.90 33.36 -68.01 -2.27 -4.17 15
18 C -0.11 -1.51 5.30 -26.43 -0.14 -1.65 15
19 C -0.01 -0.13 6.34 -27.56 -0.17 -0.31 15
20 H 0.28 6.97 8.29 -40.82 -0.34 6.63 15
21 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15
22 H 0.09 1.49 8.14 -51.93 -0.42 1.07 15
23 H 0.08 1.06 8.12 -51.93 -0.42 0.64 15
24 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15
25 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15
26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15
LS Contribution 246.18 15.07 3.71 3.71
Total: -1.00 -31.81 246.18 -8.29 -40.10
By element:
Atomic # 1 Polarization: 1.51 SS G_CDS: -2.50 Total: -0.99 kcal
Atomic # 6 Polarization: 0.87 SS G_CDS: -3.24 Total: -2.38 kcal
Atomic # 7 Polarization: -50.92 SS G_CDS: 1.04 Total: -49.88 kcal
Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal
Atomic # 35 Polarization: -1.90 SS G_CDS: -2.27 Total: -4.17 kcal
Total LS contribution 3.71 Total: 3.71 kcal
Total: -31.81 -8.29 -40.10 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261011813.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.745 kcal
(2) G-P(sol) polarization free energy of solvation -31.809 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.937 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.644 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds