Wall clock time and date at job start Mon Mar 30 2020 05:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30680 * 1 3 3 Si 1.86806 * 119.99871 * 2 1 4 4 H 1.48507 * 109.46715 * 95.01411 * 3 2 1 5 5 H 1.48496 * 109.47031 * 215.01219 * 3 2 1 6 6 H 1.48500 * 109.47273 * 335.01764 * 3 2 1 7 7 C 1.40243 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99823 * 173.96841 * 7 2 1 9 9 C 1.40122 * 120.00092 * 353.96723 * 7 2 1 10 10 N 1.33321 * 126.77598 * 5.36771 * 9 7 2 11 11 N 1.28846 * 109.42183 * 179.78658 * 10 9 7 12 12 C 1.30744 * 110.05754 * 0.43268 * 11 10 9 13 13 N 1.35527 * 107.82519 * 359.79641 * 12 11 10 14 14 C 1.46232 * 124.98881 * 179.82742 * 13 12 11 15 15 C 1.53322 * 108.72504 * 343.02237 * 14 13 12 16 16 H 1.08990 * 109.46036 * 290.18388 * 15 14 13 17 17 Br 1.96603 * 109.45846 * 170.22288 * 15 14 13 18 18 C 1.53154 * 109.53841 * 50.20695 * 15 14 13 19 19 C 1.50893 * 128.21773 * 179.83957 * 12 11 10 20 20 H 0.96999 * 120.00469 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.58729 * 102.79130 * 14 13 12 22 22 H 1.09001 * 109.59593 * 223.09432 * 14 13 12 23 23 H 1.09003 * 109.49713 * 50.54938 * 18 15 14 24 24 H 1.08997 * 109.49690 * 170.61293 * 18 15 14 25 25 H 1.08999 * 109.72391 * 44.38153 * 19 12 11 26 26 H 1.09006 * 109.71943 * 283.72032 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.5942 1.9852 1.3948 5 1 3.4813 1.4732 -0.8033 6 1 1.3892 2.6810 -0.5913 7 6 2.0080 -1.2145 -0.0005 8 1 3.0836 -1.2170 -0.0988 9 6 1.3133 -2.4247 0.1264 10 7 -0.0098 -2.5863 0.1556 11 7 -0.2858 -3.8389 0.2781 12 6 0.8177 -4.5370 0.3427 13 7 1.8597 -3.6753 0.2513 14 6 3.2705 -4.0587 0.2865 15 6 3.3809 -5.4772 0.8579 16 1 3.1313 -5.4618 1.9187 17 35 5.2192 -6.1349 0.6272 18 6 2.4110 -6.4040 0.1189 19 6 0.9699 -6.0310 0.4907 20 1 -0.4851 0.8400 0.0004 21 1 3.6800 -4.0385 -0.7234 22 1 3.8226 -3.3635 0.9189 23 1 2.5497 -6.2928 -0.9565 24 1 2.6054 -7.4374 0.4059 25 1 0.2743 -6.5395 -0.1768 26 1 0.7692 -6.3207 1.5223 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261011813.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:05 Heat of formation + Delta-G solvation = 59.644200 kcal Electronic energy + Delta-G solvation = -13567.796741 eV Core-core repulsion = 11114.298323 eV Total energy + Delta-G solvation = -2453.498418 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.002 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.09143 -36.50631 -33.71788 -32.35057 -31.00114 -28.70490 -28.11697 -25.53876 -23.48773 -21.58343 -20.65668 -18.63656 -17.28997 -15.72497 -15.20903 -14.74395 -14.11242 -14.01090 -13.64073 -13.22698 -13.09276 -11.80143 -11.60368 -11.33848 -11.27622 -11.11384 -10.87054 -10.79314 -10.36324 -9.96681 -9.88605 -9.56995 -9.41756 -8.63091 -8.32533 -7.58060 -6.61762 -4.58510 1.51586 2.95631 3.07906 3.10888 3.46865 3.83424 4.06331 4.47582 4.48205 4.58565 5.01066 5.25682 5.34306 5.39732 5.64159 5.75584 5.86814 5.94706 6.13333 6.26449 6.94108 7.00995 7.28171 7.61005 8.12837 8.22809 8.75327 8.90230 10.31680 10.75962 Molecular weight = 271.00amu Principal moments of inertia in cm(-1) A = 0.027246 B = 0.006669 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.433642 B = 4197.721393 C = 5176.925820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.081 3.919 3 Si 0.917 3.083 4 H -0.268 1.268 5 H -0.263 1.263 6 H -0.276 1.276 7 C -0.454 4.454 8 H 0.082 0.918 9 C 0.343 3.657 10 N -0.344 5.344 11 N -0.294 5.294 12 C 0.056 3.944 13 N -0.523 5.523 14 C 0.137 3.863 15 C -0.049 4.049 16 H 0.112 0.888 17 Br -0.156 7.156 18 C -0.114 4.114 19 C -0.008 4.008 20 H 0.279 0.721 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.729 -10.141 1.406 14.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.193 1.193 5 H -0.187 1.187 6 H -0.201 1.201 7 C -0.494 4.494 8 H 0.100 0.900 9 C 0.099 3.901 10 N -0.189 5.189 11 N -0.135 5.135 12 C -0.208 4.208 13 N -0.225 5.225 14 C 0.011 3.989 15 C -0.146 4.146 16 H 0.130 0.870 17 Br -0.075 7.075 18 C -0.153 4.153 19 C -0.049 4.049 20 H 0.090 0.910 21 H 0.093 0.907 22 H 0.105 0.895 23 H 0.096 0.904 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.620 -9.928 1.305 13.886 hybrid contribution 1.582 0.656 0.103 1.716 sum 11.202 -9.272 1.408 14.610 Atomic orbital electron populations 1.69949 1.07089 1.28628 1.30476 1.25771 0.94841 1.00588 0.93268 0.86191 0.80003 0.80359 0.79321 1.19338 1.18717 1.20056 1.18138 0.94152 0.87424 1.49711 0.90013 1.21460 0.89734 0.83702 0.95175 1.75852 1.08689 1.04249 1.30138 1.73870 1.23391 1.00986 1.15212 1.23588 0.85527 0.93783 1.17948 1.45820 1.04907 1.07981 1.63753 1.21496 0.82928 0.92700 1.01808 1.24897 0.87387 0.97485 1.04783 0.87008 1.97359 1.22638 1.89018 1.98505 1.21896 0.93908 0.98433 1.01053 1.19746 0.94954 0.88155 1.02033 0.91009 0.90687 0.89480 0.90421 0.89945 0.89608 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.42 11.98 55.56 0.67 -19.75 15 2 C 0.08 2.07 5.49 -17.29 -0.09 1.98 15 3 Si 0.92 18.64 29.57 -169.99 -5.03 13.61 15 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 5 H -0.26 -5.18 7.11 56.52 0.40 -4.78 15 6 H -0.28 -5.49 7.11 56.52 0.40 -5.09 15 7 C -0.45 -12.05 9.17 -38.12 -0.35 -12.40 15 8 H 0.08 1.98 7.82 -52.49 -0.41 1.57 15 9 C 0.34 9.49 7.55 -155.73 -1.18 8.32 15 10 N -0.34 -10.37 10.58 31.11 0.33 -10.04 15 11 N -0.29 -8.09 12.21 32.89 0.40 -7.69 15 12 C 0.06 1.29 7.76 -154.68 -1.20 0.09 15 13 N -0.52 -12.04 3.17 -113.04 -0.36 -12.40 15 14 C 0.14 2.40 6.13 -4.02 -0.02 2.37 15 15 C -0.05 -0.68 3.20 -26.48 -0.08 -0.77 15 16 H 0.11 1.54 8.12 -51.93 -0.42 1.12 15 17 Br -0.16 -1.90 33.36 -68.01 -2.27 -4.17 15 18 C -0.11 -1.51 5.30 -26.43 -0.14 -1.65 15 19 C -0.01 -0.13 6.34 -27.56 -0.17 -0.31 15 20 H 0.28 6.97 8.29 -40.82 -0.34 6.63 15 21 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 22 H 0.09 1.49 8.14 -51.93 -0.42 1.07 15 23 H 0.08 1.06 8.12 -51.93 -0.42 0.64 15 24 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 LS Contribution 246.18 15.07 3.71 3.71 Total: -1.00 -31.81 246.18 -8.29 -40.10 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -2.50 Total: -0.99 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -3.24 Total: -2.38 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 1.04 Total: -49.88 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Atomic # 35 Polarization: -1.90 SS G_CDS: -2.27 Total: -4.17 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.81 -8.29 -40.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011813.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.745 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds