Wall clock time and date at job start Mon Mar 30 2020 05:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30680 * 1 3 3 Si 1.86806 * 119.99871 * 2 1 4 4 H 1.48507 * 109.46715 * 95.01411 * 3 2 1 5 5 H 1.48496 * 109.47031 * 215.01219 * 3 2 1 6 6 H 1.48500 * 109.47273 * 335.01764 * 3 2 1 7 7 C 1.40243 * 120.00128 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99823 * 173.96841 * 7 2 1 9 9 C 1.40122 * 120.00092 * 353.96723 * 7 2 1 10 10 N 1.33321 * 126.77598 * 5.36771 * 9 7 2 11 11 N 1.28846 * 109.42183 * 179.78658 * 10 9 7 12 12 C 1.30744 * 110.05754 * 0.43268 * 11 10 9 13 13 N 1.35527 * 107.82519 * 359.79641 * 12 11 10 14 14 C 1.46232 * 124.98881 * 179.82742 * 13 12 11 15 15 C 1.53322 * 108.72504 * 343.02237 * 14 13 12 16 16 H 1.08990 * 109.46036 * 290.18388 * 15 14 13 17 17 Br 1.96603 * 109.45846 * 170.22288 * 15 14 13 18 18 C 1.53154 * 109.53841 * 50.20695 * 15 14 13 19 19 C 1.50893 * 128.21773 * 179.83957 * 12 11 10 20 20 H 0.96999 * 120.00469 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.58729 * 102.79130 * 14 13 12 22 22 H 1.09001 * 109.59593 * 223.09432 * 14 13 12 23 23 H 1.09003 * 109.49713 * 50.54938 * 18 15 14 24 24 H 1.08997 * 109.49690 * 170.61293 * 18 15 14 25 25 H 1.08999 * 109.72391 * 44.38153 * 19 12 11 26 26 H 1.09006 * 109.71943 * 283.72032 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 2.5942 1.9852 1.3948 5 1 3.4813 1.4732 -0.8033 6 1 1.3892 2.6810 -0.5913 7 6 2.0080 -1.2145 -0.0005 8 1 3.0836 -1.2170 -0.0988 9 6 1.3133 -2.4247 0.1264 10 7 -0.0098 -2.5863 0.1556 11 7 -0.2858 -3.8389 0.2781 12 6 0.8177 -4.5370 0.3427 13 7 1.8597 -3.6753 0.2513 14 6 3.2705 -4.0587 0.2865 15 6 3.3809 -5.4772 0.8579 16 1 3.1313 -5.4618 1.9187 17 35 5.2192 -6.1349 0.6272 18 6 2.4110 -6.4040 0.1189 19 6 0.9699 -6.0310 0.4907 20 1 -0.4851 0.8400 0.0004 21 1 3.6800 -4.0385 -0.7234 22 1 3.8226 -3.3635 0.9189 23 1 2.5497 -6.2928 -0.9565 24 1 2.6054 -7.4374 0.4059 25 1 0.2743 -6.5395 -0.1768 26 1 0.7692 -6.3207 1.5223 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261011813.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:05 Heat of formation + Delta-G solvation = 39.810601 kcal Electronic energy + Delta-G solvation = -13568.656791 eV Core-core repulsion = 11114.298323 eV Total energy + Delta-G solvation = -2454.358468 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 271.002 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.95074 -37.92901 -35.62713 -33.99535 -32.34506 -30.48503 -29.52006 -27.38556 -24.93871 -23.05035 -22.60334 -20.13666 -19.13566 -17.53122 -16.78983 -16.43754 -15.63016 -15.31674 -15.01008 -14.77510 -14.65981 -13.31919 -13.27462 -12.98645 -12.88267 -12.48786 -12.20595 -12.10224 -11.91705 -11.51739 -11.26297 -11.02532 -10.92172 -10.45740 -10.28013 -9.56668 -8.51482 -6.60507 0.39334 1.29490 1.41325 1.57347 1.72412 2.15977 2.38804 2.54406 3.21082 3.34569 3.45423 3.78113 3.92480 4.16091 4.33966 4.43229 4.57576 4.83103 4.85677 5.01845 5.09410 5.23956 5.36858 5.72688 6.24401 6.33815 6.80665 7.01566 8.45383 8.79469 Molecular weight = 271.00amu Principal moments of inertia in cm(-1) A = 0.027246 B = 0.006669 C = 0.005407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.433642 B = 4197.721393 C = 5176.925820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.031 3.969 3 Si 1.002 2.998 4 H -0.261 1.261 5 H -0.249 1.249 6 H -0.271 1.271 7 C -0.481 4.481 8 H 0.097 0.903 9 C 0.312 3.688 10 N -0.401 5.401 11 N -0.355 5.355 12 C 0.086 3.914 13 N -0.524 5.524 14 C 0.129 3.871 15 C -0.044 4.044 16 H 0.117 0.883 17 Br -0.129 7.129 18 C -0.105 4.105 19 C -0.010 4.010 20 H 0.283 0.717 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.075 0.925 24 H 0.122 0.878 25 H 0.101 0.899 26 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.156 -11.419 1.662 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.172 1.172 6 H -0.196 1.196 7 C -0.521 4.521 8 H 0.115 0.885 9 C 0.066 3.934 10 N -0.246 5.246 11 N -0.194 5.194 12 C -0.182 4.182 13 N -0.224 5.224 14 C 0.004 3.996 15 C -0.141 4.141 16 H 0.135 0.865 17 Br -0.048 7.048 18 C -0.143 4.143 19 C -0.050 4.050 20 H 0.093 0.907 21 H 0.099 0.901 22 H 0.107 0.893 23 H 0.093 0.907 24 H 0.140 0.860 25 H 0.119 0.881 26 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.061 -11.245 1.560 16.564 hybrid contribution 0.898 0.855 0.030 1.241 sum 12.960 -10.390 1.590 16.686 Atomic orbital electron populations 1.70101 1.09348 1.29942 1.32215 1.26932 0.95579 1.04568 0.91832 0.84937 0.78621 0.74648 0.79693 1.18538 1.17249 1.19569 1.18613 0.94994 0.87896 1.50615 0.88463 1.21821 0.89775 0.85704 0.96144 1.75696 1.10728 1.05901 1.32251 1.73752 1.25803 1.00859 1.18965 1.24877 0.84470 0.96478 1.12406 1.46073 1.07155 1.06723 1.62462 1.21825 0.79834 0.95282 1.02618 1.24740 0.89229 0.95252 1.04889 0.86450 1.97390 1.20547 1.88378 1.98490 1.21897 0.91386 1.00236 1.00816 1.20103 0.97621 0.83271 1.04024 0.90652 0.90090 0.89336 0.90673 0.85994 0.88055 0.88521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -45.66 11.98 21.88 0.26 -45.39 15 2 C 0.03 1.64 5.49 85.35 0.47 2.11 15 3 Si 1.00 38.44 29.57 68.60 2.03 40.46 15 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 15 5 H -0.25 -8.89 7.11 99.48 0.71 -8.18 15 6 H -0.27 -10.06 7.11 99.48 0.71 -9.36 15 7 C -0.48 -26.10 9.17 23.22 0.21 -25.88 15 8 H 0.10 4.72 7.82 -2.91 -0.02 4.70 15 9 C 0.31 17.82 7.55 133.68 1.01 18.83 15 10 N -0.40 -25.35 10.58 -55.48 -0.59 -25.94 15 11 N -0.35 -20.18 12.21 -49.87 -0.61 -20.79 15 12 C 0.09 3.89 7.76 137.96 1.07 4.96 15 13 N -0.52 -24.13 3.17 -511.54 -1.62 -25.75 15 14 C 0.13 4.31 6.13 86.54 0.53 4.84 15 15 C -0.04 -1.10 3.20 30.75 0.10 -1.00 15 16 H 0.12 2.84 8.12 -2.39 -0.02 2.82 15 17 Br -0.13 -2.70 33.36 -20.37 -0.68 -3.38 15 18 C -0.10 -2.36 5.30 30.79 0.16 -2.20 15 19 C -0.01 -0.29 6.34 30.06 0.19 -0.10 15 20 H 0.28 14.78 8.29 -92.71 -0.77 14.01 15 21 H 0.08 2.62 8.14 -2.39 -0.02 2.60 15 22 H 0.09 2.93 8.14 -2.39 -0.02 2.91 15 23 H 0.07 1.79 8.12 -2.39 -0.02 1.77 15 24 H 0.12 1.91 8.14 -2.39 -0.02 1.89 15 25 H 0.10 2.74 8.14 -2.39 -0.02 2.72 15 26 H 0.10 2.49 8.14 -2.38 -0.02 2.47 15 Total: -1.00 -73.52 246.18 3.73 -69.79 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 1.19 Total: 9.44 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: 3.74 Total: 1.56 kcal Atomic # 7 Polarization: -115.32 SS G_CDS: -2.56 Total: -117.88 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.46 kcal Atomic # 35 Polarization: -2.70 SS G_CDS: -0.68 Total: -3.38 kcal Total: -73.52 3.73 -69.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261011813.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.602 kcal (2) G-P(sol) polarization free energy of solvation -73.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds