Wall clock time and date at job start Mon Mar 30 2020 05:30:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30680 * 1
3 3 Si 1.86806 * 119.99871 * 2 1
4 4 H 1.48507 * 109.46715 * 95.01411 * 3 2 1
5 5 H 1.48496 * 109.47031 * 215.01219 * 3 2 1
6 6 H 1.48500 * 109.47273 * 335.01764 * 3 2 1
7 7 C 1.40243 * 120.00128 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99823 * 173.96841 * 7 2 1
9 9 C 1.40122 * 120.00092 * 353.96723 * 7 2 1
10 10 N 1.33321 * 126.77598 * 5.36771 * 9 7 2
11 11 N 1.28846 * 109.42183 * 179.78658 * 10 9 7
12 12 C 1.30744 * 110.05754 * 0.43268 * 11 10 9
13 13 N 1.35527 * 107.82519 * 359.79641 * 12 11 10
14 14 C 1.46232 * 124.98881 * 179.82742 * 13 12 11
15 15 C 1.53322 * 108.72504 * 343.02237 * 14 13 12
16 16 H 1.08990 * 109.46036 * 290.18388 * 15 14 13
17 17 Br 1.96603 * 109.45846 * 170.22288 * 15 14 13
18 18 C 1.53154 * 109.53841 * 50.20695 * 15 14 13
19 19 C 1.50893 * 128.21773 * 179.83957 * 12 11 10
20 20 H 0.96999 * 120.00469 * 359.97438 * 1 2 3
21 21 H 1.09002 * 109.58729 * 102.79130 * 14 13 12
22 22 H 1.09001 * 109.59593 * 223.09432 * 14 13 12
23 23 H 1.09003 * 109.49713 * 50.54938 * 18 15 14
24 24 H 1.08997 * 109.49690 * 170.61293 * 18 15 14
25 25 H 1.08999 * 109.72391 * 44.38153 * 19 12 11
26 26 H 1.09006 * 109.71943 * 283.72032 * 19 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3068 0.0000 0.0000
3 14 2.2408 1.6178 0.0000
4 1 2.5942 1.9852 1.3948
5 1 3.4813 1.4732 -0.8033
6 1 1.3892 2.6810 -0.5913
7 6 2.0080 -1.2145 -0.0005
8 1 3.0836 -1.2170 -0.0988
9 6 1.3133 -2.4247 0.1264
10 7 -0.0098 -2.5863 0.1556
11 7 -0.2858 -3.8389 0.2781
12 6 0.8177 -4.5370 0.3427
13 7 1.8597 -3.6753 0.2513
14 6 3.2705 -4.0587 0.2865
15 6 3.3809 -5.4772 0.8579
16 1 3.1313 -5.4618 1.9187
17 35 5.2192 -6.1349 0.6272
18 6 2.4110 -6.4040 0.1189
19 6 0.9699 -6.0310 0.4907
20 1 -0.4851 0.8400 0.0004
21 1 3.6800 -4.0385 -0.7234
22 1 3.8226 -3.3635 0.9189
23 1 2.5497 -6.2928 -0.9565
24 1 2.6054 -7.4374 0.4059
25 1 0.2743 -6.5395 -0.1768
26 1 0.7692 -6.3207 1.5223
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261011813.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:30:05
Heat of formation + Delta-G solvation = 39.810601 kcal
Electronic energy + Delta-G solvation = -13568.656791 eV
Core-core repulsion = 11114.298323 eV
Total energy + Delta-G solvation = -2454.358468 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 271.002 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-42.95074 -37.92901 -35.62713 -33.99535 -32.34506 -30.48503 -29.52006 -27.38556
-24.93871 -23.05035 -22.60334 -20.13666 -19.13566 -17.53122 -16.78983 -16.43754
-15.63016 -15.31674 -15.01008 -14.77510 -14.65981 -13.31919 -13.27462 -12.98645
-12.88267 -12.48786 -12.20595 -12.10224 -11.91705 -11.51739 -11.26297 -11.02532
-10.92172 -10.45740 -10.28013 -9.56668 -8.51482 -6.60507 0.39334 1.29490
1.41325 1.57347 1.72412 2.15977 2.38804 2.54406 3.21082 3.34569
3.45423 3.78113 3.92480 4.16091 4.33966 4.43229 4.57576 4.83103
4.85677 5.01845 5.09410 5.23956 5.36858 5.72688 6.24401 6.33815
6.80665 7.01566 8.45383 8.79469
Molecular weight = 271.00amu
Principal moments of inertia in cm(-1)
A = 0.027246 B = 0.006669 C = 0.005407
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1027.433642 B = 4197.721393 C = 5176.925820
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.791 5.791
2 C 0.031 3.969
3 Si 1.002 2.998
4 H -0.261 1.261
5 H -0.249 1.249
6 H -0.271 1.271
7 C -0.481 4.481
8 H 0.097 0.903
9 C 0.312 3.688
10 N -0.401 5.401
11 N -0.355 5.355
12 C 0.086 3.914
13 N -0.524 5.524
14 C 0.129 3.871
15 C -0.044 4.044
16 H 0.117 0.883
17 Br -0.129 7.129
18 C -0.105 4.105
19 C -0.010 4.010
20 H 0.283 0.717
21 H 0.081 0.919
22 H 0.088 0.912
23 H 0.075 0.925
24 H 0.122 0.878
25 H 0.101 0.899
26 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.156 -11.419 1.662 17.500
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.416 5.416
2 C -0.189 4.189
3 Si 0.821 3.179
4 H -0.185 1.185
5 H -0.172 1.172
6 H -0.196 1.196
7 C -0.521 4.521
8 H 0.115 0.885
9 C 0.066 3.934
10 N -0.246 5.246
11 N -0.194 5.194
12 C -0.182 4.182
13 N -0.224 5.224
14 C 0.004 3.996
15 C -0.141 4.141
16 H 0.135 0.865
17 Br -0.048 7.048
18 C -0.143 4.143
19 C -0.050 4.050
20 H 0.093 0.907
21 H 0.099 0.901
22 H 0.107 0.893
23 H 0.093 0.907
24 H 0.140 0.860
25 H 0.119 0.881
26 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 12.061 -11.245 1.560 16.564
hybrid contribution 0.898 0.855 0.030 1.241
sum 12.960 -10.390 1.590 16.686
Atomic orbital electron populations
1.70101 1.09348 1.29942 1.32215 1.26932 0.95579 1.04568 0.91832
0.84937 0.78621 0.74648 0.79693 1.18538 1.17249 1.19569 1.18613
0.94994 0.87896 1.50615 0.88463 1.21821 0.89775 0.85704 0.96144
1.75696 1.10728 1.05901 1.32251 1.73752 1.25803 1.00859 1.18965
1.24877 0.84470 0.96478 1.12406 1.46073 1.07155 1.06723 1.62462
1.21825 0.79834 0.95282 1.02618 1.24740 0.89229 0.95252 1.04889
0.86450 1.97390 1.20547 1.88378 1.98490 1.21897 0.91386 1.00236
1.00816 1.20103 0.97621 0.83271 1.04024 0.90652 0.90090 0.89336
0.90673 0.85994 0.88055 0.88521
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -45.66 11.98 21.88 0.26 -45.39 15
2 C 0.03 1.64 5.49 85.35 0.47 2.11 15
3 Si 1.00 38.44 29.57 68.60 2.03 40.46 15
4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 15
5 H -0.25 -8.89 7.11 99.48 0.71 -8.18 15
6 H -0.27 -10.06 7.11 99.48 0.71 -9.36 15
7 C -0.48 -26.10 9.17 23.22 0.21 -25.88 15
8 H 0.10 4.72 7.82 -2.91 -0.02 4.70 15
9 C 0.31 17.82 7.55 133.68 1.01 18.83 15
10 N -0.40 -25.35 10.58 -55.48 -0.59 -25.94 15
11 N -0.35 -20.18 12.21 -49.87 -0.61 -20.79 15
12 C 0.09 3.89 7.76 137.96 1.07 4.96 15
13 N -0.52 -24.13 3.17 -511.54 -1.62 -25.75 15
14 C 0.13 4.31 6.13 86.54 0.53 4.84 15
15 C -0.04 -1.10 3.20 30.75 0.10 -1.00 15
16 H 0.12 2.84 8.12 -2.39 -0.02 2.82 15
17 Br -0.13 -2.70 33.36 -20.37 -0.68 -3.38 15
18 C -0.10 -2.36 5.30 30.79 0.16 -2.20 15
19 C -0.01 -0.29 6.34 30.06 0.19 -0.10 15
20 H 0.28 14.78 8.29 -92.71 -0.77 14.01 15
21 H 0.08 2.62 8.14 -2.39 -0.02 2.60 15
22 H 0.09 2.93 8.14 -2.39 -0.02 2.91 15
23 H 0.07 1.79 8.12 -2.39 -0.02 1.77 15
24 H 0.12 1.91 8.14 -2.39 -0.02 1.89 15
25 H 0.10 2.74 8.14 -2.39 -0.02 2.72 15
26 H 0.10 2.49 8.14 -2.38 -0.02 2.47 15
Total: -1.00 -73.52 246.18 3.73 -69.79
By element:
Atomic # 1 Polarization: 8.25 SS G_CDS: 1.19 Total: 9.44 kcal
Atomic # 6 Polarization: -2.18 SS G_CDS: 3.74 Total: 1.56 kcal
Atomic # 7 Polarization: -115.32 SS G_CDS: -2.56 Total: -117.88 kcal
Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.46 kcal
Atomic # 35 Polarization: -2.70 SS G_CDS: -0.68 Total: -3.38 kcal
Total: -73.52 3.73 -69.79 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261011813.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.602 kcal
(2) G-P(sol) polarization free energy of solvation -73.521 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.081 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.791 kcal
(6) G-S(sol) free energy of system = (1) + (5) 39.811 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds