Wall clock time and date at job start Mon Mar 30 2020 05:29:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30854 * 1
3 3 Si 1.86803 * 119.99829 * 2 1
4 4 H 1.48498 * 109.46867 * 269.99921 * 3 2 1
5 5 H 1.48501 * 109.47216 * 29.99778 * 3 2 1
6 6 H 1.48499 * 109.47135 * 150.00119 * 3 2 1
7 7 C 1.39875 * 120.00235 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99748 * 179.97438 * 7 2 1
9 9 C 1.41390 * 119.99616 * 0.27905 * 7 2 1
10 10 N 1.35260 * 126.13149 * 179.71797 * 9 7 2
11 11 C 1.30216 * 107.15638 * 179.97438 * 10 9 7
12 12 N 1.35252 * 108.08097 * 0.04673 * 11 10 9
13 13 N 1.28529 * 108.48941 * 359.68520 * 12 11 10
14 14 C 1.46740 * 124.36847 * 179.90941 * 12 11 10
15 15 C 1.53194 * 108.85693 * 342.60805 * 14 12 11
16 16 C 1.53154 * 109.54157 * 50.72806 * 15 14 12
17 17 C 1.50914 * 127.51428 * 180.02562 * 11 10 9
18 18 H 1.08999 * 109.71348 * 283.92743 * 17 11 10
19 19 Br 1.96605 * 109.71490 * 44.52559 * 17 11 10
20 20 H 0.96996 * 120.00439 * 0.02562 * 1 2 3
21 21 H 1.09000 * 109.57252 * 222.78995 * 14 12 11
22 22 H 1.09003 * 109.57061 * 102.42036 * 14 12 11
23 23 H 1.09002 * 109.45857 * 290.70783 * 15 14 12
24 24 H 1.08994 * 109.46101 * 170.74904 * 15 14 12
25 25 H 1.09001 * 109.53205 * 170.63552 * 16 15 14
26 26 H 1.09001 * 109.53100 * 50.42433 * 16 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3085 0.0000 0.0000
3 14 2.2425 1.6178 0.0000
4 1 2.4900 2.0464 -1.4001
5 1 1.4399 2.6527 0.7000
6 1 3.5401 1.4403 0.7000
7 6 2.0080 -1.2113 0.0005
8 1 3.0880 -1.2112 0.0001
9 6 1.3010 -2.4358 -0.0049
10 7 1.8483 -3.6727 -0.0104
11 6 0.8659 -4.5274 -0.0136
12 7 -0.2947 -3.8329 -0.0112
13 7 -0.0186 -2.5777 0.0001
14 6 -1.6275 -4.4469 -0.0154
15 6 -1.4979 -5.9084 -0.4560
16 6 -0.4125 -6.5996 0.3746
17 6 0.9583 -6.0337 -0.0195
18 1 1.2271 -6.3816 -1.0169
19 35 2.3161 -6.6200 1.2758
20 1 -0.4850 0.8400 -0.0004
21 1 -2.2739 -3.9117 -0.7110
22 1 -2.0524 -4.4041 0.9874
23 1 -1.2273 -5.9470 -1.5112
24 1 -2.4494 -6.4185 -0.3064
25 1 -0.4330 -7.6720 0.1810
26 1 -0.5921 -6.4160 1.4340
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261096845.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:29:36
Heat of formation + Delta-G solvation = 56.417043 kcal
Electronic energy + Delta-G solvation = -13568.789317 eV
Core-core repulsion = 11115.150959 eV
Total energy + Delta-G solvation = -2453.638358 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 271.002 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-43.32395 -37.79620 -35.23431 -34.56458 -31.62458 -30.89149 -29.41613 -27.92970
-24.41040 -23.40606 -22.45011 -20.29631 -18.77262 -17.49548 -16.98650 -16.54153
-15.78062 -15.31940 -15.16036 -14.74510 -14.25314 -13.30568 -13.03404 -12.81604
-12.69840 -12.57402 -12.12617 -12.11219 -11.91252 -11.54369 -11.19672 -10.91612
-10.81129 -10.45627 -10.28543 -9.54880 -8.40298 -6.41346 0.47348 1.38791
1.41444 1.57040 1.63919 2.19995 2.31214 2.38109 3.20429 3.45744
3.54484 3.65949 3.84396 4.14053 4.31688 4.50035 4.67797 4.85684
4.92469 4.94380 5.17274 5.18360 5.45485 6.22741 6.36043 6.56281
6.89599 7.08837 8.32492 8.62379
Molecular weight = 271.00amu
Principal moments of inertia in cm(-1)
A = 0.029963 B = 0.007000 C = 0.005799
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 934.273831 B = 3998.818377 C = 4827.434950
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.818 5.818
2 C 0.028 3.972
3 Si 0.995 3.005
4 H -0.263 1.263
5 H -0.267 1.267
6 H -0.261 1.261
7 C -0.477 4.477
8 H 0.076 0.924
9 C 0.283 3.717
10 N -0.567 5.567
11 C 0.163 3.837
12 N -0.336 5.336
13 N -0.371 5.371
14 C 0.114 3.886
15 C -0.117 4.117
16 C -0.111 4.111
17 C 0.052 3.948
18 H 0.136 0.864
19 Br -0.139 7.139
20 H 0.276 0.724
21 H 0.088 0.912
22 H 0.085 0.915
23 H 0.080 0.920
24 H 0.143 0.857
25 H 0.132 0.868
26 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.111 -15.084 0.228 15.635
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.448 5.448
2 C -0.187 4.187
3 Si 0.816 3.184
4 H -0.188 1.188
5 H -0.192 1.192
6 H -0.185 1.185
7 C -0.518 4.518
8 H 0.095 0.905
9 C 0.022 3.978
10 N -0.297 5.297
11 C -0.113 4.113
12 N -0.133 5.133
13 N -0.208 5.208
14 C -0.006 4.006
15 C -0.156 4.156
16 C -0.150 4.150
17 C -0.046 4.046
18 H 0.154 0.846
19 Br -0.059 7.059
20 H 0.086 0.914
21 H 0.106 0.894
22 H 0.104 0.896
23 H 0.098 0.902
24 H 0.161 0.839
25 H 0.150 0.850
26 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -4.012 -14.768 0.676 15.318
hybrid contribution 0.159 1.033 -0.230 1.070
sum -3.853 -13.735 0.446 14.272
Atomic orbital electron populations
1.70053 1.08489 1.28945 1.37326 1.26675 0.95789 1.03951 0.92311
0.85022 0.78573 0.75571 0.79254 1.18764 1.19190 1.18492 1.18527
0.93689 0.88016 1.51611 0.90535 1.21321 0.86547 0.91993 0.97942
1.71097 1.31087 1.00466 1.27067 1.24450 0.84102 0.96488 1.06268
1.47614 1.07987 1.03838 1.53852 1.75184 1.17224 0.95802 1.32581
1.22171 0.79639 0.95151 1.03646 1.21988 1.02023 0.90858 1.00713
1.22062 0.88592 1.02903 1.01396 1.23088 0.96112 0.85976 0.99436
0.84613 1.97351 1.58369 1.89078 1.61138 0.91371 0.89362 0.89639
0.90153 0.83934 0.85000 0.90547
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.82 -48.25 11.94 21.81 0.26 -47.99 15
2 C 0.03 1.60 5.49 85.23 0.47 2.07 15
3 Si 1.00 42.88 29.56 68.60 2.03 44.91 15
4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 15
5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15
6 H -0.26 -10.98 7.11 99.48 0.71 -10.28 15
7 C -0.48 -29.55 9.50 23.44 0.22 -29.33 15
8 H 0.08 4.65 7.84 -2.91 -0.02 4.62 15
9 C 0.28 17.55 7.64 134.76 1.03 18.58 15
10 N -0.57 -31.62 11.32 -185.03 -2.10 -33.72 15
11 C 0.16 7.33 7.06 138.21 0.98 8.30 15
12 N -0.34 -15.55 3.75 -337.22 -1.26 -16.81 15
13 N -0.37 -21.80 10.37 -56.05 -0.58 -22.38 15
14 C 0.11 3.52 7.20 86.40 0.62 4.15 15
15 C -0.12 -2.19 5.93 30.71 0.18 -2.01 15
16 C -0.11 -2.24 5.34 30.80 0.16 -2.07 15
17 C 0.05 1.59 3.58 30.07 0.11 1.70 15
18 H 0.14 3.61 8.14 -2.39 -0.02 3.59 15
19 Br -0.14 -4.41 33.29 -20.37 -0.68 -5.09 15
20 H 0.28 14.77 8.30 -92.71 -0.77 14.00 15
21 H 0.09 2.69 8.14 -2.39 -0.02 2.67 15
22 H 0.09 2.45 8.14 -2.39 -0.02 2.43 15
23 H 0.08 1.50 8.11 -2.39 -0.02 1.48 15
24 H 0.14 1.38 8.14 -2.39 -0.02 1.36 15
25 H 0.13 1.59 8.14 -2.39 -0.02 1.57 15
26 H 0.08 1.67 8.11 -2.39 -0.02 1.65 15
Total: -1.00 -79.44 246.36 2.63 -76.80
By element:
Atomic # 1 Polarization: 1.70 SS G_CDS: 1.19 Total: 2.89 kcal
Atomic # 6 Polarization: -2.39 SS G_CDS: 3.77 Total: 1.39 kcal
Atomic # 7 Polarization: -117.22 SS G_CDS: -3.68 Total: -120.90 kcal
Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal
Atomic # 35 Polarization: -4.41 SS G_CDS: -0.68 Total: -5.09 kcal
Total: -79.44 2.63 -76.80 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261096845.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 133.218 kcal
(2) G-P(sol) polarization free energy of solvation -79.436 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.782 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.801 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.417 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds