Wall clock time and date at job start Mon Mar 30 2020 05:17:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86801 * 119.99772 * 2 1
4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1
5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1
6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1
7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1
9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1
10 10 H 1.09007 * 109.47098 * 60.28447 * 9 7 2
11 11 O 1.42902 * 109.47440 * 300.28198 * 9 7 2
12 12 C 1.50703 * 109.47151 * 180.27762 * 9 7 2
13 13 C 1.38153 * 120.02999 * 95.00052 * 12 9 7
14 14 C 1.38261 * 120.08722 * 179.97438 * 13 12 9
15 15 C 1.38308 * 120.15602 * 0.02596 * 14 13 12
16 16 C 1.38157 * 120.06444 * 0.02562 * 15 14 13
17 17 Br 1.89099 * 120.04369 * 180.02562 * 16 15 14
18 18 C 1.38856 * 120.03284 * 274.72780 * 12 9 7
19 19 N 1.39725 * 120.07861 * 0.02562 * 18 12 9
20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3
21 21 H 0.96704 * 113.99514 * 299.99782 * 11 9 7
22 22 H 1.07997 * 119.95814 * 0.02562 * 13 12 9
23 23 H 1.07997 * 119.91982 * 180.02562 * 14 13 12
24 24 H 1.07997 * 119.96586 * 180.02562 * 15 14 13
25 25 H 0.97000 * 119.99947 * 359.97438 * 19 18 12
26 26 H 0.96997 * 120.00292 * 179.97438 * 19 18 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7090 1.3465 -0.0006
5 1 1.8903 2.3966 -1.2125
6 1 1.8904 2.3965 1.2125
7 6 2.0046 -1.1939 -0.0005
8 1 3.0846 -1.1939 -0.0001
9 6 1.2511 -2.4991 0.0054
10 1 0.6244 -2.5609 -0.8844
11 8 0.4296 -2.5696 1.1725
12 6 2.2305 -3.6445 0.0104
13 6 2.6007 -4.2324 1.2045
14 6 3.4987 -5.2837 1.2104
15 6 4.0301 -5.7503 0.0218
16 6 3.6651 -5.1663 -1.1759
17 35 4.3914 -5.8052 -2.8008
18 6 2.7573 -4.1137 -1.1856
19 7 2.3810 -3.5246 -2.3955
20 1 -0.4850 0.8400 0.0004
21 1 0.9219 -2.5206 2.0035
22 1 2.1875 -3.8709 2.1345
23 1 3.7859 -5.7415 2.1454
24 1 4.7309 -6.5719 0.0299
25 1 1.7507 -2.7873 -2.4006
26 1 2.7499 -3.8530 -3.2303
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261211076.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:17:37
Heat of formation + Delta-G solvation = -48.492789 kcal
Electronic energy + Delta-G solvation = -13432.999051 eV
Core-core repulsion = 10942.518710 eV
Total energy + Delta-G solvation = -2490.480341 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 270.995 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-40.58388 -37.38434 -35.48793 -34.26087 -33.00285 -30.82231 -29.22833 -28.41490
-25.15761 -22.76558 -21.84846 -19.11313 -18.21026 -17.99628 -16.84733 -16.66653
-15.60269 -15.15965 -14.82840 -14.78287 -14.39774 -14.30230 -13.40673 -13.00257
-12.85532 -12.60553 -12.12424 -12.08269 -11.72512 -11.51620 -11.27580 -11.07358
-10.75307 -10.31488 -9.44234 -8.40290 -8.08637 -6.39063 0.39094 0.74028
0.77741 1.38268 1.41947 1.52696 2.38469 2.91570 3.04473 3.12152
3.96448 4.22833 4.27769 4.51407 4.58867 4.80528 5.04024 5.16692
5.37072 5.60087 5.65386 5.90506 5.99539 6.06676 6.53591 6.70814
6.93279 7.31996 7.50669 8.89254
Molecular weight = 270.99amu
Principal moments of inertia in cm(-1)
A = 0.029185 B = 0.006589 C = 0.005922
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 959.161286 B = 4248.467951 C = 4727.109779
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.034 3.966
3 Si 0.954 3.046
4 H -0.270 1.270
5 H -0.279 1.279
6 H -0.279 1.279
7 C -0.563 4.563
8 H 0.049 0.951
9 C 0.274 3.726
10 H 0.034 0.966
11 O -0.576 6.576
12 C -0.174 4.174
13 C -0.070 4.070
14 C -0.171 4.171
15 C -0.061 4.061
16 C -0.187 4.187
17 Br -0.052 7.052
18 C 0.235 3.765
19 N -0.863 5.863
20 H 0.262 0.738
21 H 0.358 0.642
22 H 0.130 0.870
23 H 0.154 0.846
24 H 0.151 0.849
25 H 0.404 0.596
26 H 0.401 0.599
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.243 -11.487 -3.101 15.067
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.169 4.169
3 Si 0.780 3.220
4 H -0.195 1.195
5 H -0.204 1.204
6 H -0.205 1.205
7 C -0.601 4.601
8 H 0.067 0.933
9 C 0.216 3.784
10 H 0.052 0.948
11 O -0.381 6.381
12 C -0.180 4.180
13 C -0.089 4.089
14 C -0.192 4.192
15 C -0.081 4.081
16 C -0.271 4.271
17 Br 0.032 6.968
18 C 0.126 3.874
19 N -0.403 5.403
20 H 0.071 0.929
21 H 0.204 0.796
22 H 0.148 0.852
23 H 0.171 0.829
24 H 0.168 0.832
25 H 0.234 0.766
26 H 0.232 0.768
Dipole moment (debyes) X Y Z Total
from point charges 8.877 -11.675 -4.174 15.248
hybrid contribution 0.292 1.481 0.268 1.533
sum 9.168 -10.194 -3.906 14.256
Atomic orbital electron populations
1.70189 1.07338 1.27352 1.48343 1.25772 0.95360 1.02317 0.93484
0.85588 0.78947 0.79735 0.77757 1.19483 1.20445 1.20502 1.21762
0.92813 0.91602 1.53893 0.93260 1.17959 0.86350 0.88829 0.85214
0.94839 1.86538 1.38972 1.96365 1.16208 1.20665 1.03689 1.01063
0.92550 1.21023 0.95794 0.94981 0.97069 1.21118 1.00349 0.99094
0.98642 1.21046 0.98335 0.98647 0.90061 1.21284 1.08095 1.04525
0.93172 1.96499 1.84055 1.87153 1.29061 1.17418 0.92015 0.90810
0.87188 1.42766 1.52159 1.40249 1.05145 0.92854 0.79572 0.85197
0.82861 0.83160 0.76620 0.76802
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -51.34 12.83 21.45 0.28 -51.06 15
2 C 0.03 1.81 5.40 84.65 0.46 2.26 15
3 Si 0.95 42.52 29.54 68.60 2.03 44.55 15
4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15
5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15
6 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15
7 C -0.56 -29.79 8.75 25.60 0.22 -29.57 15
8 H 0.05 2.65 7.74 -2.91 -0.02 2.63 15
9 C 0.27 13.61 2.51 29.10 0.07 13.68 15
10 H 0.03 1.84 6.80 -2.38 -0.02 1.82 15
11 O -0.58 -29.14 12.37 -148.98 -1.84 -30.98 15
12 C -0.17 -7.29 5.02 -19.74 -0.10 -7.39 15
13 C -0.07 -2.48 9.30 22.26 0.21 -2.27 15
14 C -0.17 -4.96 10.04 22.29 0.22 -4.74 15
15 C -0.06 -1.74 9.78 22.27 0.22 -1.53 15
16 C -0.19 -6.08 6.24 22.44 0.14 -5.94 15
17 Br -0.05 -1.39 32.12 -20.37 -0.65 -2.04 15
18 C 0.23 8.96 6.73 38.22 0.26 9.22 15
19 N -0.86 -30.85 8.94 -51.31 -0.46 -31.30 15
20 H 0.26 14.26 8.31 -92.71 -0.77 13.49 15
21 H 0.36 15.76 7.32 -74.05 -0.54 15.22 15
22 H 0.13 4.29 6.40 -2.91 -0.02 4.27 15
23 H 0.15 3.32 8.06 -2.91 -0.02 3.29 15
24 H 0.15 3.35 8.06 -2.91 -0.02 3.32 15
25 H 0.40 15.71 6.93 -92.71 -0.64 15.07 15
26 H 0.40 12.23 7.23 -92.71 -0.67 11.56 15
Total: -1.00 -61.01 247.74 0.44 -60.58
By element:
Atomic # 1 Polarization: 37.14 SS G_CDS: -0.61 Total: 36.53 kcal
Atomic # 6 Polarization: -27.97 SS G_CDS: 1.70 Total: -26.27 kcal
Atomic # 7 Polarization: -82.19 SS G_CDS: -0.18 Total: -82.37 kcal
Atomic # 8 Polarization: -29.14 SS G_CDS: -1.84 Total: -30.98 kcal
Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal
Atomic # 35 Polarization: -1.39 SS G_CDS: -0.65 Total: -2.04 kcal
Total: -61.01 0.44 -60.58 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261211076.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.084 kcal
(2) G-P(sol) polarization free energy of solvation -61.013 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.930 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.576 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.493 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds