Wall clock time and date at job start Mon Mar 30 2020 05:17:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86797 * 119.99869 * 2 1
4 4 H 1.48505 * 109.47276 * 240.00113 * 3 2 1
5 5 H 1.48506 * 109.47308 * 0.02562 * 3 2 1
6 6 H 1.48498 * 109.47031 * 119.99950 * 3 2 1
7 7 C 1.37872 * 119.99741 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99420 * 180.02562 * 7 2 1
9 9 C 1.50695 * 120.00417 * 359.97438 * 7 2 1
10 10 H 1.09000 * 109.47480 * 59.99934 * 9 7 2
11 11 O 1.42900 * 109.47154 * 299.99977 * 9 7 2
12 12 C 1.50706 * 109.47284 * 180.02562 * 9 7 2
13 13 C 1.38125 * 120.03104 * 94.72398 * 12 9 7
14 14 C 1.38250 * 120.08543 * 179.77105 * 13 12 9
15 15 C 1.38400 * 120.13770 * 0.50450 * 14 13 12
16 16 Br 1.89102 * 119.96991 * 179.76829 * 15 14 13
17 17 C 1.38167 * 120.05440 * 359.75012 * 15 14 13
18 18 C 1.38898 * 120.02218 * 275.00044 * 12 9 7
19 19 N 1.39673 * 120.07536 * 359.97438 * 18 12 9
20 20 H 0.96998 * 120.00358 * 359.97438 * 1 2 3
21 21 H 0.96695 * 114.00302 * 300.00349 * 11 9 7
22 22 H 1.08005 * 119.95768 * 0.02562 * 13 12 9
23 23 H 1.08001 * 119.92891 * 180.24909 * 14 13 12
24 24 H 1.08003 * 120.04537 * 180.02562 * 17 15 14
25 25 H 0.97003 * 119.99731 * 0.02562 * 19 18 12
26 26 H 0.96999 * 120.00229 * 179.97438 * 19 18 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.1029 1.6965 -1.2125
5 1 1.2841 2.7465 0.0006
6 1 3.1029 1.6964 1.2125
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1940 -0.0001
9 6 1.2511 -2.4991 -0.0005
10 1 0.6240 -2.5567 -0.8903
11 8 0.4300 -2.5751 1.1665
12 6 2.2304 -3.6446 -0.0005
13 6 2.6047 -4.2340 1.1912
14 6 3.4994 -5.2880 1.1921
15 6 4.0310 -5.7493 0.0005
16 35 5.2594 -7.1870 0.0078
17 6 3.6645 -5.1605 -1.1946
18 6 2.7617 -4.1047 -1.1986
19 7 2.3890 -3.5072 -2.4048
20 1 -0.4850 0.8400 0.0004
21 1 0.9223 -2.5299 1.9975
22 1 2.1948 -3.8737 2.1233
23 1 3.7873 -5.7496 2.1251
24 1 4.0791 -5.5209 -2.1245
25 1 1.7587 -2.7698 -2.4064
26 1 2.7609 -3.8291 -3.2408
RHF calculation, no. of doubly occupied orbitals= 38
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261220538.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:17:41
Heat of formation + Delta-G solvation = -48.959865 kcal
Electronic energy + Delta-G solvation = -13326.610366 eV
Core-core repulsion = 10836.109771 eV
Total energy + Delta-G solvation = -2490.500595 eV
No. of doubly occupied orbitals = 38
Molecular weight
(most abundant/longest-lived isotopes) = 270.995 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-40.58162 -37.38492 -35.50897 -34.26981 -32.84816 -30.74582 -29.79260 -28.09250
-24.93188 -23.17007 -21.70841 -19.10445 -18.08667 -17.89315 -16.86392 -16.65256
-15.69804 -15.19299 -14.80037 -14.76314 -14.45036 -14.24716 -13.39155 -13.03255
-12.80855 -12.60210 -12.28660 -12.18445 -12.06191 -11.21712 -11.19164 -10.99303
-10.73698 -10.31845 -9.48340 -8.38098 -8.07301 -6.38812 0.34683 0.69845
0.71078 1.41561 1.42775 1.50592 2.38799 2.90056 3.09943 3.16665
4.00576 4.16416 4.31898 4.39564 4.58232 4.82922 4.96942 5.20151
5.29565 5.49682 5.65438 5.88837 5.90044 6.06157 6.63044 6.70675
7.08031 7.32204 7.50616 8.89396
Molecular weight = 270.99amu
Principal moments of inertia in cm(-1)
A = 0.039768 B = 0.005204 C = 0.005127
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 703.907930 B = 5378.931118 C = 5460.335645
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.034 3.966
3 Si 0.954 3.046
4 H -0.270 1.270
5 H -0.285 1.285
6 H -0.272 1.272
7 C -0.565 4.565
8 H 0.050 0.950
9 C 0.272 3.728
10 H 0.037 0.963
11 O -0.577 6.577
12 C -0.163 4.163
13 C -0.077 4.077
14 C -0.153 4.153
15 C -0.061 4.061
16 Br -0.048 7.048
17 C -0.180 4.180
18 C 0.217 3.783
19 N -0.864 5.864
20 H 0.263 0.737
21 H 0.358 0.642
22 H 0.132 0.868
23 H 0.142 0.858
24 H 0.143 0.857
25 H 0.402 0.598
26 H 0.406 0.594
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.814 -12.296 -1.451 15.799
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.532 5.532
2 C -0.169 4.169
3 Si 0.779 3.221
4 H -0.195 1.195
5 H -0.210 1.210
6 H -0.197 1.197
7 C -0.603 4.603
8 H 0.068 0.932
9 C 0.215 3.785
10 H 0.055 0.945
11 O -0.382 6.382
12 C -0.168 4.168
13 C -0.097 4.097
14 C -0.175 4.175
15 C -0.141 4.141
16 Br 0.037 6.963
17 C -0.205 4.205
18 C 0.110 3.890
19 N -0.404 5.404
20 H 0.072 0.928
21 H 0.204 0.796
22 H 0.150 0.850
23 H 0.160 0.840
24 H 0.161 0.839
25 H 0.232 0.768
26 H 0.235 0.765
Dipole moment (debyes) X Y Z Total
from point charges 9.636 -12.787 -1.903 16.124
hybrid contribution 0.240 1.590 0.017 1.609
sum 9.877 -11.197 -1.885 15.049
Atomic orbital electron populations
1.70177 1.07347 1.27500 1.48146 1.25775 0.95365 1.02316 0.93465
0.85702 0.78405 0.79050 0.78937 1.19510 1.21034 1.19736 1.21704
0.92853 0.91561 1.54165 0.93155 1.18003 0.86428 0.88825 0.85280
0.94533 1.86534 1.39058 1.96371 1.16243 1.20835 1.02573 1.00304
0.93075 1.20806 0.96329 0.95039 0.97526 1.20918 1.00226 0.99109
0.97212 1.21444 0.99727 0.97106 0.95844 1.96595 1.57682 1.42713
1.99323 1.20513 1.02743 0.99211 0.97990 1.17608 0.92856 0.91670
0.86900 1.42488 1.52447 1.40326 1.05091 0.92840 0.79600 0.85000
0.83976 0.83938 0.76781 0.76458
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -50.97 12.84 21.45 0.28 -50.69 15
2 C 0.03 1.80 5.40 84.65 0.46 2.26 15
3 Si 0.95 42.06 29.54 68.60 2.03 44.09 15
4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15
5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 15
6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15
7 C -0.57 -29.54 8.74 25.60 0.22 -29.32 15
8 H 0.05 2.66 7.74 -2.91 -0.02 2.63 15
9 C 0.27 13.34 2.50 29.10 0.07 13.41 15
10 H 0.04 1.96 6.82 -2.39 -0.02 1.95 15
11 O -0.58 -29.11 12.39 -148.98 -1.85 -30.95 15
12 C -0.16 -6.72 5.02 -19.73 -0.10 -6.82 15
13 C -0.08 -2.82 9.30 22.25 0.21 -2.61 15
14 C -0.15 -4.81 9.78 22.31 0.22 -4.59 15
15 C -0.06 -1.87 6.22 22.29 0.14 -1.73 15
16 Br -0.05 -1.19 33.70 -20.37 -0.69 -1.87 15
17 C -0.18 -5.64 9.63 22.42 0.22 -5.43 15
18 C 0.22 7.91 6.73 38.21 0.26 8.17 15
19 N -0.86 -28.07 8.99 -51.37 -0.46 -28.53 15
20 H 0.26 14.26 8.31 -92.71 -0.77 13.49 15
21 H 0.36 15.80 7.31 -74.06 -0.54 15.26 15
22 H 0.13 4.48 6.41 -2.91 -0.02 4.46 15
23 H 0.14 3.74 8.06 -2.91 -0.02 3.72 15
24 H 0.14 3.74 8.06 -2.91 -0.02 3.72 15
25 H 0.40 14.68 6.94 -92.71 -0.64 14.04 15
26 H 0.41 10.07 8.84 -92.71 -0.82 9.25 15
Total: -1.00 -59.98 250.59 0.24 -59.74
By element:
Atomic # 1 Polarization: 35.65 SS G_CDS: -0.76 Total: 34.89 kcal
Atomic # 6 Polarization: -28.36 SS G_CDS: 1.69 Total: -26.66 kcal
Atomic # 7 Polarization: -79.04 SS G_CDS: -0.19 Total: -79.23 kcal
Atomic # 8 Polarization: -29.11 SS G_CDS: -1.85 Total: -30.95 kcal
Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal
Atomic # 35 Polarization: -1.19 SS G_CDS: -0.69 Total: -1.87 kcal
Total: -59.98 0.24 -59.74 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261220538.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.781 kcal
(2) G-P(sol) polarization free energy of solvation -59.982 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.201 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.241 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.741 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.960 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds