Wall clock time and date at job start Mon Mar 30 2020 05:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.36048 * 116.99719 * 2 1 4 4 C 1.39311 * 120.01245 * 270.27782 * 3 2 1 5 5 N 1.39099 * 120.19208 * 359.97438 * 4 3 2 6 6 C 1.40324 * 119.61405 * 180.25353 * 4 3 2 7 7 C 1.47195 * 120.17682 * 179.74786 * 6 4 3 8 8 O 1.21557 * 120.00139 * 353.77354 * 7 6 4 9 9 O 1.34802 * 119.99766 * 173.50631 * 7 6 4 10 10 C 1.34865 * 116.99835 * 180.02562 * 9 7 6 11 11 H 1.07996 * 119.99986 * 359.97438 * 10 9 7 12 12 C 1.38789 * 119.99784 * 179.97438 * 10 9 7 13 13 N 1.31431 * 120.00043 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99752 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47001 * 60.00209 * 14 12 10 16 16 H 1.48500 * 109.46737 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47011 * 299.99939 * 14 12 10 18 18 C 1.39953 * 119.64171 * 359.47267 * 6 4 3 19 19 C 1.37635 * 120.01143 * 0.27321 * 18 6 4 20 20 C 1.38451 * 120.01180 * 90.00091 * 3 2 1 21 21 Cl 1.73606 * 119.81545 * 359.97438 * 20 3 2 22 22 H 1.08995 * 109.46876 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46996 * 300.00287 * 1 2 3 24 24 H 1.08999 * 109.46594 * 59.99979 * 1 2 3 25 25 H 0.97004 * 120.00025 * 337.14460 * 5 4 3 26 26 H 0.96999 * 119.99879 * 157.14178 * 5 4 3 27 27 H 0.96995 * 119.99941 * 179.97438 * 13 12 10 28 28 H 1.07999 * 119.99697 * 180.29820 * 18 6 4 29 29 H 1.07994 * 119.80360 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 2.3578 1.8358 -1.2063 5 7 2.0393 1.2223 -2.4134 6 6 2.9996 3.0836 -1.1966 7 6 3.3391 3.7509 -2.4639 8 8 3.1674 3.1737 -3.5198 9 8 3.8352 5.0043 -2.4538 10 6 4.1247 5.5578 -3.6491 11 1 3.9569 4.9989 -4.5578 12 6 4.6383 6.8457 -3.7112 13 7 4.8420 7.5260 -2.6053 14 14 5.0399 7.6121 -5.3668 15 1 3.8085 7.6765 -6.1942 16 1 5.5713 8.9834 -5.1614 17 1 6.0598 6.7852 -6.0606 18 6 3.3100 3.6928 0.0246 19 6 2.9910 3.0657 1.2075 20 6 2.3610 1.8293 1.1989 21 17 1.9644 1.0521 2.6997 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 1.9159 0.2609 -2.4511 26 1 1.9405 1.7559 -3.2174 27 1 5.2013 8.4259 -2.6487 28 1 3.7996 4.6553 0.0387 29 1 3.2325 3.5386 2.1479 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310007743.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:03 Heat of formation + Delta-G solvation = -112.325557 kcal Electronic energy + Delta-G solvation = -18271.078106 eV Core-core repulsion = 14992.257455 eV Total energy + Delta-G solvation = -3278.820652 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.044 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.65350 -40.53949 -38.30300 -37.77321 -37.12362 -35.26408 -34.29520 -31.71575 -29.96648 -27.70481 -27.57052 -25.03419 -23.27931 -22.14250 -19.91332 -19.44546 -18.28907 -18.17832 -17.72618 -16.94457 -16.59231 -16.34825 -16.23299 -16.03597 -15.72540 -14.88840 -14.55481 -14.17589 -13.67086 -13.49362 -13.35859 -13.24233 -12.81751 -12.62737 -12.37382 -12.16913 -12.05458 -11.99889 -11.48314 -11.25419 -10.84654 -10.70438 -9.80951 -8.74310 -8.55263 -6.31674 -0.44888 0.25216 0.94885 1.35142 1.36142 1.50813 1.64938 2.07409 2.39095 2.64051 2.85908 2.92603 3.04019 3.83766 4.06650 4.20113 4.32269 4.37532 4.49065 4.50982 4.79497 4.96036 5.05765 5.17809 5.23655 5.44467 5.79693 6.13774 6.44837 6.62144 6.86729 6.92708 7.72585 8.64747 Molecular weight = 271.04amu Principal moments of inertia in cm(-1) A = 0.034153 B = 0.004798 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.649565 B = 5834.720159 C = 6555.993436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.324 6.324 3 C 0.012 3.988 4 C 0.261 3.739 5 N -0.843 5.843 6 C -0.193 4.193 7 C 0.445 3.555 8 O -0.575 6.575 9 O -0.230 6.230 10 C -0.418 4.418 11 H 0.086 0.914 12 C -0.002 4.002 13 N -0.896 5.896 14 Si 1.017 2.983 15 H -0.261 1.261 16 H -0.261 1.261 17 H -0.262 1.262 18 C -0.018 4.018 19 C -0.159 4.159 20 C 0.015 3.985 21 Cl -0.039 7.039 22 H 0.121 0.879 23 H 0.050 0.950 24 H 0.044 0.956 25 H 0.409 0.591 26 H 0.411 0.589 27 H 0.280 0.720 28 H 0.139 0.861 29 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.333 -11.003 8.099 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.240 6.240 3 C -0.038 4.038 4 C 0.149 3.851 5 N -0.388 5.388 6 C -0.200 4.200 7 C 0.296 3.704 8 O -0.475 6.475 9 O -0.137 6.137 10 C -0.494 4.494 11 H 0.103 0.897 12 C -0.203 4.203 13 N -0.533 5.533 14 Si 0.836 3.164 15 H -0.186 1.186 16 H -0.185 1.185 17 H -0.187 1.187 18 C -0.037 4.037 19 C -0.179 4.179 20 C -0.014 4.014 21 Cl -0.009 7.009 22 H 0.139 0.861 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.239 0.761 26 H 0.248 0.752 27 H 0.089 0.911 28 H 0.157 0.843 29 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -7.256 -11.146 8.016 15.528 hybrid contribution -0.012 0.383 -0.983 1.055 sum -7.268 -10.763 7.033 14.769 Atomic orbital electron populations 1.23272 0.77943 1.04870 1.00969 1.86122 1.21255 1.22632 1.94018 1.17538 1.06376 0.90913 0.88954 1.17817 0.89997 0.89702 0.87560 1.42810 1.76707 1.11179 1.08136 1.18855 1.11007 0.98242 0.91891 1.21265 0.78297 0.81590 0.89256 1.90369 1.56594 1.66082 1.34440 1.83928 1.68096 1.26439 1.35263 1.21455 1.45457 0.99177 0.83316 0.89655 1.26525 0.94929 0.94989 1.03850 1.70048 1.41454 1.12244 1.29537 0.84685 0.79310 0.77594 0.74793 1.18566 1.18454 1.18700 1.21322 0.93426 0.98822 0.90105 1.20871 1.03670 0.94052 0.99323 1.21339 0.99486 0.93710 0.86827 1.98359 1.92189 1.80476 1.29905 0.86101 0.93088 0.93719 0.76056 0.75192 0.91056 0.84281 0.81506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 11.13 113.37 1.26 1.71 15 2 O -0.32 -8.27 9.23 -94.10 -0.87 -9.14 15 3 C 0.01 0.35 5.73 22.58 0.13 0.48 15 4 C 0.26 9.13 6.78 38.75 0.26 9.39 15 5 N -0.84 -27.10 8.45 -50.60 -0.43 -27.53 15 6 C -0.19 -7.92 5.89 -20.00 -0.12 -8.04 15 7 C 0.44 22.79 7.80 70.18 0.55 23.34 15 8 O -0.58 -30.24 13.04 19.65 0.26 -29.98 15 9 O -0.23 -13.41 9.01 10.53 0.09 -13.32 15 10 C -0.42 -24.98 9.65 67.95 0.66 -24.32 15 11 H 0.09 5.11 6.86 -2.91 -0.02 5.09 15 12 C 0.00 -0.10 5.50 84.88 0.47 0.36 15 13 N -0.90 -51.80 13.67 21.63 0.30 -51.50 15 14 Si 1.02 42.59 29.55 68.60 2.03 44.61 15 15 H -0.26 -10.51 7.11 99.48 0.71 -9.80 15 16 H -0.26 -10.07 7.11 99.48 0.71 -9.37 15 17 H -0.26 -10.62 7.11 99.48 0.71 -9.91 15 18 C -0.02 -0.63 9.61 22.54 0.22 -0.41 15 19 C -0.16 -4.49 9.80 22.25 0.22 -4.28 15 20 C 0.01 0.41 6.33 22.45 0.14 0.55 15 21 Cl -0.04 -0.88 28.47 -2.72 -0.08 -0.95 15 22 H 0.12 1.57 8.14 -2.39 -0.02 1.55 15 23 H 0.05 0.92 8.14 -2.39 -0.02 0.90 15 24 H 0.04 0.86 8.14 -2.39 -0.02 0.84 15 25 H 0.41 10.64 8.42 -92.71 -0.78 9.86 15 26 H 0.41 14.90 6.05 -92.71 -0.56 14.34 15 27 H 0.28 14.69 8.31 -92.71 -0.77 13.92 15 28 H 0.14 5.32 7.62 -2.91 -0.02 5.30 15 29 H 0.17 3.70 8.06 -2.91 -0.02 3.67 15 Total: -1.00 -67.59 280.70 4.97 -62.63 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -0.12 Total: 26.41 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 3.78 Total: -1.23 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -0.13 Total: -79.03 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -0.52 Total: -52.44 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -0.08 Total: -0.95 kcal Total: -67.59 4.97 -62.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310007743.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.698 kcal (2) G-P(sol) polarization free energy of solvation -67.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds