Wall clock time and date at job start Mon Mar 30 2020 04:41:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46896 * 109.47417 * 2 1
4 4 C 1.46897 * 111.00048 * 303.61372 * 3 2 1
5 5 C 1.50712 * 109.46913 * 293.95049 * 4 3 2
6 6 H 1.07997 * 119.99485 * 0.02562 * 5 4 3
7 7 C 1.37872 * 120.00018 * 179.97438 * 5 4 3
8 8 N 1.31519 * 120.00157 * 359.97438 * 7 5 4
9 9 Si 1.86806 * 119.99909 * 180.02562 * 7 5 4
10 10 H 1.48503 * 109.46695 * 0.02562 * 9 7 5
11 11 H 1.48500 * 109.47126 * 119.99873 * 9 7 5
12 12 H 1.48494 * 109.46927 * 239.99923 * 9 7 5
13 13 C 1.46906 * 110.99708 * 67.56208 * 3 2 1
14 14 C 1.53002 * 109.46966 * 76.19249 * 13 3 2
15 15 H 1.08994 * 109.46988 * 302.25311 * 14 13 3
16 16 O 1.42901 * 109.47294 * 62.25370 * 14 13 3
17 17 C 1.53002 * 109.46842 * 182.25249 * 14 13 3
18 18 N 1.46900 * 109.47018 * 179.97438 * 17 14 13
19 19 C 1.46844 * 111.00159 * 294.21492 * 18 17 14
20 20 C 1.53039 * 109.52526 * 174.15910 * 19 18 17
21 21 C 1.53124 * 109.27690 * 59.17628 * 20 19 18
22 22 C 1.53114 * 109.16145 * 302.34810 * 21 20 19
23 23 C 1.46843 * 110.99767 * 170.00271 * 18 17 14
24 24 H 1.09001 * 109.47236 * 182.89364 * 1 2 3
25 25 H 1.08996 * 109.47171 * 302.89661 * 1 2 3
26 26 H 1.09001 * 109.46956 * 62.89618 * 1 2 3
27 27 H 1.09005 * 109.47450 * 239.99856 * 2 1 3
28 28 H 1.09004 * 109.47221 * 120.00235 * 2 1 3
29 29 H 1.08998 * 109.47476 * 53.94703 * 4 3 2
30 30 H 1.08997 * 109.47306 * 173.95653 * 4 3 2
31 31 H 0.96994 * 119.99528 * 180.02562 * 8 7 5
32 32 H 1.09006 * 109.46937 * 196.18810 * 13 3 2
33 33 H 1.08993 * 109.47142 * 316.18572 * 13 3 2
34 34 H 0.96698 * 113.99702 * 59.99832 * 16 14 13
35 35 H 1.08994 * 109.47380 * 299.99823 * 17 14 13
36 36 H 1.08997 * 109.47065 * 60.00033 * 17 14 13
37 37 H 1.09004 * 109.45880 * 294.17645 * 19 18 17
38 38 H 1.09002 * 109.46765 * 54.13975 * 19 18 17
39 39 H 1.08997 * 109.50113 * 299.24021 * 20 19 18
40 40 H 1.08995 * 109.50531 * 179.11335 * 20 19 18
41 41 H 1.08991 * 109.52193 * 182.43747 * 21 20 19
42 42 H 1.09003 * 109.52089 * 62.24928 * 21 20 19
43 43 H 1.09000 * 109.50746 * 297.71410 * 22 21 20
44 44 H 1.08996 * 109.50546 * 177.59223 * 22 21 20
45 45 H 1.08999 * 109.46323 * 305.85019 * 23 18 17
46 46 H 1.08992 * 109.46579 * 65.82926 * 23 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3849 0.0000
4 6 1.4795 2.1344 -1.1421
5 6 2.0269 1.5605 -2.4237
6 1 2.7076 0.7227 -2.3927
7 6 1.6578 2.1045 -3.6356
8 7 0.8276 3.1239 -3.6733
9 14 2.3358 1.3928 -5.2241
10 1 3.2411 0.2580 -4.9113
11 1 1.2137 0.9117 -6.0696
12 1 3.0909 2.4425 -5.9541
13 6 1.7017 2.0557 1.2677
14 6 2.6604 1.5696 2.3564
15 1 2.5833 0.4865 2.4513
16 8 3.9996 1.9227 2.0043
17 6 2.2936 2.2258 3.6890
18 7 3.2138 1.7586 4.7345
19 6 3.0388 0.3225 4.9863
20 6 4.1071 -0.1580 5.9711
21 6 3.9789 0.6279 7.2791
22 6 4.1167 2.1236 6.9822
23 6 3.0481 2.5380 5.9680
24 1 -0.3634 -1.0264 0.0519
25 1 -0.3633 0.5581 0.8628
26 1 -0.3633 0.4682 -0.9148
27 1 1.8934 -0.5139 -0.8900
28 1 1.8933 -0.5139 0.8900
29 1 0.3922 2.0581 -1.1452
30 1 1.7701 3.1816 -1.0597
31 1 0.5677 3.5063 -4.5260
32 1 1.8078 3.1336 1.1450
33 1 0.6767 1.8220 1.5552
34 1 4.1418 2.8738 1.9027
35 1 2.3708 3.3089 3.5941
36 1 1.2722 1.9565 3.9577
37 1 2.0496 0.1458 5.4086
38 1 3.1364 -0.2251 4.0489
39 1 5.0962 0.0059 5.5436
40 1 3.9672 -1.2205 6.1699
41 1 4.7652 0.3193 7.9679
42 1 3.0042 0.4336 7.7267
43 1 5.1060 2.3234 6.5705
44 1 3.9837 2.6912 7.9032
45 1 3.1526 3.5995 5.7436
46 1 2.0590 2.3509 6.3858
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000383847195.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:41:31
Heat of formation + Delta-G solvation = -52.577118 kcal
Electronic energy + Delta-G solvation = -21856.344748 eV
Core-core repulsion = 18780.456858 eV
Total energy + Delta-G solvation = -3075.887890 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-39.34664 -37.76727 -35.82816 -33.39843 -32.54030 -30.99098 -30.08097 -28.98584
-26.88245 -24.86596 -23.58577 -23.13869 -22.67560 -20.88084 -19.82376 -19.25318
-16.50783 -16.06826 -15.92618 -15.49538 -15.03220 -14.80958 -14.64421 -14.43849
-14.23439 -13.81230 -13.55401 -13.23207 -13.04940 -12.69480 -12.31521 -12.15085
-11.83646 -11.67394 -11.34609 -11.32076 -11.11254 -11.01245 -10.87765 -10.74204
-10.66117 -10.55362 -10.52778 -10.17815 -10.02657 -9.79637 -9.48666 -9.02487
-8.40008 -8.29109 -7.07371 -5.99318 -3.99410 3.33492 3.40991 3.46680
3.74810 4.45529 4.62171 4.67217 4.74045 4.84740 4.92571 5.11630
5.20116 5.26563 5.35291 5.35643 5.39819 5.46357 5.57736 5.58688
5.67008 5.70054 5.75501 5.80048 5.82144 5.86257 5.97810 6.00792
6.04581 6.07767 6.21772 6.23236 6.42491 6.48924 6.74216 6.94251
7.02814 7.07094 7.34636 7.44555 7.85923 8.12292 8.22984 8.29723
8.61347 9.09119 9.64656 11.11615
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.036867 B = 0.003542 C = 0.003507
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 759.295093 B = 7903.180154 C = 7981.197954
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C 0.063 3.937
3 N -0.522 5.522
4 C 0.189 3.811
5 C -0.500 4.500
6 H 0.063 0.937
7 C 0.053 3.947
8 N -0.901 5.901
9 Si 0.896 3.104
10 H -0.272 1.272
11 H -0.286 1.286
12 H -0.284 1.284
13 C 0.019 3.981
14 C 0.122 3.878
15 H 0.090 0.910
16 O -0.534 6.534
17 C 0.022 3.978
18 N -0.525 5.525
19 C 0.053 3.947
20 C -0.116 4.116
21 C -0.121 4.121
22 C -0.116 4.116
23 C 0.055 3.945
24 H 0.045 0.955
25 H 0.041 0.959
26 H 0.072 0.928
27 H 0.079 0.921
28 H 0.048 0.952
29 H -0.002 1.002
30 H 0.025 0.975
31 H 0.259 0.741
32 H 0.067 0.933
33 H 0.033 0.967
34 H 0.366 0.634
35 H 0.076 0.924
36 H 0.037 0.963
37 H 0.027 0.973
38 H 0.080 0.920
39 H 0.073 0.927
40 H 0.063 0.937
41 H 0.061 0.939
42 H 0.055 0.945
43 H 0.072 0.928
44 H 0.063 0.937
45 H 0.072 0.928
46 H 0.027 0.973
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.443 -3.073 20.459 20.832
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.248 4.248
2 C -0.066 4.066
3 N -0.245 5.245
4 C 0.064 3.936
5 C -0.539 4.539
6 H 0.081 0.919
7 C -0.147 4.147
8 N -0.541 5.541
9 Si 0.724 3.276
10 H -0.196 1.196
11 H -0.212 1.212
12 H -0.211 1.211
13 C -0.111 4.111
14 C 0.061 3.939
15 H 0.108 0.892
16 O -0.337 6.337
17 C -0.106 4.106
18 N -0.249 5.249
19 C -0.074 4.074
20 C -0.154 4.154
21 C -0.159 4.159
22 C -0.154 4.154
23 C -0.073 4.073
24 H 0.064 0.936
25 H 0.060 0.940
26 H 0.091 0.909
27 H 0.097 0.903
28 H 0.066 0.934
29 H 0.016 0.984
30 H 0.044 0.956
31 H 0.069 0.931
32 H 0.086 0.914
33 H 0.051 0.949
34 H 0.212 0.788
35 H 0.095 0.905
36 H 0.055 0.945
37 H 0.045 0.955
38 H 0.098 0.902
39 H 0.092 0.908
40 H 0.082 0.918
41 H 0.080 0.920
42 H 0.074 0.926
43 H 0.090 0.910
44 H 0.081 0.919
45 H 0.091 0.909
46 H 0.046 0.954
Dipole moment (debyes) X Y Z Total
from point charges 3.433 -3.540 20.134 20.729
hybrid contribution -1.767 0.300 -0.569 1.880
sum 1.666 -3.240 19.565 19.901
Atomic orbital electron populations
1.22399 0.99556 1.00603 1.02226 1.21955 0.91872 0.91683 1.01050
1.62226 1.59159 1.01688 1.01439 1.19815 0.93444 0.93320 0.87025
1.21204 1.26737 1.15954 0.89979 0.91857 1.24979 0.95345 0.95172
0.99218 1.69969 1.34500 1.24021 1.25649 0.86472 0.78723 0.79101
0.83329 1.19628 1.21247 1.21064 1.22775 0.96555 0.99278 0.92504
1.21839 0.83412 0.99192 0.89432 0.89199 1.86590 1.27037 1.28136
1.91925 1.22885 0.93876 1.00633 0.93242 1.61811 1.52722 1.03102
1.07301 1.22131 0.96776 0.88888 0.99642 1.21571 1.00185 0.98743
0.94900 1.21580 1.01338 0.95523 0.97434 1.21573 0.99980 0.95915
0.97918 1.22089 0.97049 0.97990 0.90180 0.93599 0.93965 0.90943
0.90272 0.93352 0.98438 0.95645 0.93105 0.91420 0.94898 0.78783
0.90513 0.94530 0.95490 0.90202 0.90830 0.91791 0.91996 0.92585
0.90950 0.91881 0.90920 0.95434
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -3.44 9.20 37.16 0.34 -3.10 16
2 C 0.06 1.23 5.73 -3.83 -0.02 1.21 16
3 N -0.52 -11.16 4.54 -236.06 -1.07 -12.23 16
4 C 0.19 4.87 4.39 -4.97 -0.02 4.84 16
5 C -0.50 -14.08 8.56 -34.44 -0.29 -14.37 16
6 H 0.06 1.79 7.10 -52.49 -0.37 1.42 16
7 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16
8 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16
9 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16
10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16
11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16
13 C 0.02 0.32 4.54 -3.82 -0.02 0.31 16
14 C 0.12 1.82 2.92 -26.73 -0.08 1.74 16
15 H 0.09 1.41 5.06 -51.93 -0.26 1.15 16
16 O -0.53 -8.91 13.11 -35.23 -0.46 -9.37 16
17 C 0.02 0.27 4.62 -3.82 -0.02 0.26 16
18 N -0.52 -6.23 4.52 -234.67 -1.06 -7.29 16
19 C 0.05 0.60 5.29 -3.83 -0.02 0.58 16
20 C -0.12 -1.13 6.09 -26.65 -0.16 -1.29 16
21 C -0.12 -1.03 6.00 -26.61 -0.16 -1.19 16
22 C -0.12 -1.02 6.09 -26.65 -0.16 -1.18 16
23 C 0.05 0.55 5.46 -3.83 -0.02 0.53 16
24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16
25 H 0.04 0.71 6.24 -51.93 -0.32 0.39 16
26 H 0.07 1.54 6.39 -51.93 -0.33 1.21 16
27 H 0.08 1.69 6.96 -51.93 -0.36 1.33 16
28 H 0.05 0.84 6.67 -51.93 -0.35 0.49 16
29 H 0.00 -0.06 5.97 -51.93 -0.31 -0.37 16
30 H 0.03 0.71 7.82 -51.93 -0.41 0.30 16
31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16
32 H 0.07 1.18 7.73 -51.93 -0.40 0.78 16
33 H 0.03 0.55 5.98 -51.93 -0.31 0.24 16
34 H 0.37 5.19 9.04 45.56 0.41 5.61 16
35 H 0.08 0.89 7.99 -51.93 -0.41 0.48 16
36 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16
37 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16
38 H 0.08 0.99 6.21 -51.93 -0.32 0.67 16
39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
45 H 0.07 0.69 8.02 -51.93 -0.42 0.28 16
46 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16
LS Contribution 347.56 15.07 5.24 5.24
Total: -1.00 -30.50 347.56 -9.90 -40.40
By element:
Atomic # 1 Polarization: 10.23 SS G_CDS: -7.53 Total: 2.70 kcal
Atomic # 6 Polarization: -9.50 SS G_CDS: -0.73 Total: -10.24 kcal
Atomic # 7 Polarization: -44.19 SS G_CDS: -1.40 Total: -45.59 kcal
Atomic # 8 Polarization: -8.91 SS G_CDS: -0.46 Total: -9.37 kcal
Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal
Total LS contribution 5.24 Total: 5.24 kcal
Total: -30.50 -9.90 -40.40 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000383847195.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.174 kcal
(2) G-P(sol) polarization free energy of solvation -30.499 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.673 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.403 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.577 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds