Wall clock time and date at job start Mon Mar 30 2020 04:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 109.47417 * 2 1 4 4 C 1.46897 * 111.00048 * 303.61372 * 3 2 1 5 5 C 1.50712 * 109.46913 * 293.95049 * 4 3 2 6 6 H 1.07997 * 119.99485 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00018 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00157 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99909 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46695 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47126 * 119.99873 * 9 7 5 12 12 H 1.48494 * 109.46927 * 239.99923 * 9 7 5 13 13 C 1.46906 * 110.99708 * 67.56208 * 3 2 1 14 14 C 1.53002 * 109.46966 * 76.19249 * 13 3 2 15 15 H 1.08994 * 109.46988 * 302.25311 * 14 13 3 16 16 O 1.42901 * 109.47294 * 62.25370 * 14 13 3 17 17 C 1.53002 * 109.46842 * 182.25249 * 14 13 3 18 18 N 1.46900 * 109.47018 * 179.97438 * 17 14 13 19 19 C 1.46844 * 111.00159 * 294.21492 * 18 17 14 20 20 C 1.53039 * 109.52526 * 174.15910 * 19 18 17 21 21 C 1.53124 * 109.27690 * 59.17628 * 20 19 18 22 22 C 1.53114 * 109.16145 * 302.34810 * 21 20 19 23 23 C 1.46843 * 110.99767 * 170.00271 * 18 17 14 24 24 H 1.09001 * 109.47236 * 182.89364 * 1 2 3 25 25 H 1.08996 * 109.47171 * 302.89661 * 1 2 3 26 26 H 1.09001 * 109.46956 * 62.89618 * 1 2 3 27 27 H 1.09005 * 109.47450 * 239.99856 * 2 1 3 28 28 H 1.09004 * 109.47221 * 120.00235 * 2 1 3 29 29 H 1.08998 * 109.47476 * 53.94703 * 4 3 2 30 30 H 1.08997 * 109.47306 * 173.95653 * 4 3 2 31 31 H 0.96994 * 119.99528 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.46937 * 196.18810 * 13 3 2 33 33 H 1.08993 * 109.47142 * 316.18572 * 13 3 2 34 34 H 0.96698 * 113.99702 * 59.99832 * 16 14 13 35 35 H 1.08994 * 109.47380 * 299.99823 * 17 14 13 36 36 H 1.08997 * 109.47065 * 60.00033 * 17 14 13 37 37 H 1.09004 * 109.45880 * 294.17645 * 19 18 17 38 38 H 1.09002 * 109.46765 * 54.13975 * 19 18 17 39 39 H 1.08997 * 109.50113 * 299.24021 * 20 19 18 40 40 H 1.08995 * 109.50531 * 179.11335 * 20 19 18 41 41 H 1.08991 * 109.52193 * 182.43747 * 21 20 19 42 42 H 1.09003 * 109.52089 * 62.24928 * 21 20 19 43 43 H 1.09000 * 109.50746 * 297.71410 * 22 21 20 44 44 H 1.08996 * 109.50546 * 177.59223 * 22 21 20 45 45 H 1.08999 * 109.46323 * 305.85019 * 23 18 17 46 46 H 1.08992 * 109.46579 * 65.82926 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4795 2.1344 -1.1421 5 6 2.0269 1.5605 -2.4237 6 1 2.7076 0.7227 -2.3927 7 6 1.6578 2.1045 -3.6356 8 7 0.8276 3.1239 -3.6733 9 14 2.3358 1.3928 -5.2241 10 1 3.2411 0.2580 -4.9113 11 1 1.2137 0.9117 -6.0696 12 1 3.0909 2.4425 -5.9541 13 6 1.7017 2.0557 1.2677 14 6 2.6604 1.5696 2.3564 15 1 2.5833 0.4865 2.4513 16 8 3.9996 1.9227 2.0043 17 6 2.2936 2.2258 3.6890 18 7 3.2138 1.7586 4.7345 19 6 3.0388 0.3225 4.9863 20 6 4.1071 -0.1580 5.9711 21 6 3.9789 0.6279 7.2791 22 6 4.1167 2.1236 6.9822 23 6 3.0481 2.5380 5.9680 24 1 -0.3634 -1.0264 0.0519 25 1 -0.3633 0.5581 0.8628 26 1 -0.3633 0.4682 -0.9148 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.3922 2.0581 -1.1452 30 1 1.7701 3.1816 -1.0597 31 1 0.5677 3.5063 -4.5260 32 1 1.8078 3.1336 1.1450 33 1 0.6767 1.8220 1.5552 34 1 4.1418 2.8738 1.9027 35 1 2.3708 3.3089 3.5941 36 1 1.2722 1.9565 3.9577 37 1 2.0496 0.1458 5.4086 38 1 3.1364 -0.2251 4.0489 39 1 5.0962 0.0059 5.5436 40 1 3.9672 -1.2205 6.1699 41 1 4.7652 0.3193 7.9679 42 1 3.0042 0.4336 7.7267 43 1 5.1060 2.3234 6.5705 44 1 3.9837 2.6912 7.9032 45 1 3.1526 3.5995 5.7436 46 1 2.0590 2.3509 6.3858 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383847195.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:31 Heat of formation + Delta-G solvation = -52.577118 kcal Electronic energy + Delta-G solvation = -21856.344748 eV Core-core repulsion = 18780.456858 eV Total energy + Delta-G solvation = -3075.887890 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.34664 -37.76727 -35.82816 -33.39843 -32.54030 -30.99098 -30.08097 -28.98584 -26.88245 -24.86596 -23.58577 -23.13869 -22.67560 -20.88084 -19.82376 -19.25318 -16.50783 -16.06826 -15.92618 -15.49538 -15.03220 -14.80958 -14.64421 -14.43849 -14.23439 -13.81230 -13.55401 -13.23207 -13.04940 -12.69480 -12.31521 -12.15085 -11.83646 -11.67394 -11.34609 -11.32076 -11.11254 -11.01245 -10.87765 -10.74204 -10.66117 -10.55362 -10.52778 -10.17815 -10.02657 -9.79637 -9.48666 -9.02487 -8.40008 -8.29109 -7.07371 -5.99318 -3.99410 3.33492 3.40991 3.46680 3.74810 4.45529 4.62171 4.67217 4.74045 4.84740 4.92571 5.11630 5.20116 5.26563 5.35291 5.35643 5.39819 5.46357 5.57736 5.58688 5.67008 5.70054 5.75501 5.80048 5.82144 5.86257 5.97810 6.00792 6.04581 6.07767 6.21772 6.23236 6.42491 6.48924 6.74216 6.94251 7.02814 7.07094 7.34636 7.44555 7.85923 8.12292 8.22984 8.29723 8.61347 9.09119 9.64656 11.11615 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.036867 B = 0.003542 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.295093 B = 7903.180154 C = 7981.197954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.063 3.937 3 N -0.522 5.522 4 C 0.189 3.811 5 C -0.500 4.500 6 H 0.063 0.937 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.284 1.284 13 C 0.019 3.981 14 C 0.122 3.878 15 H 0.090 0.910 16 O -0.534 6.534 17 C 0.022 3.978 18 N -0.525 5.525 19 C 0.053 3.947 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.116 4.116 23 C 0.055 3.945 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.048 0.952 29 H -0.002 1.002 30 H 0.025 0.975 31 H 0.259 0.741 32 H 0.067 0.933 33 H 0.033 0.967 34 H 0.366 0.634 35 H 0.076 0.924 36 H 0.037 0.963 37 H 0.027 0.973 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.072 0.928 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.443 -3.073 20.459 20.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.066 4.066 3 N -0.245 5.245 4 C 0.064 3.936 5 C -0.539 4.539 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.111 4.111 14 C 0.061 3.939 15 H 0.108 0.892 16 O -0.337 6.337 17 C -0.106 4.106 18 N -0.249 5.249 19 C -0.074 4.074 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.073 4.073 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.016 0.984 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.212 0.788 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.433 -3.540 20.134 20.729 hybrid contribution -1.767 0.300 -0.569 1.880 sum 1.666 -3.240 19.565 19.901 Atomic orbital electron populations 1.22399 0.99556 1.00603 1.02226 1.21955 0.91872 0.91683 1.01050 1.62226 1.59159 1.01688 1.01439 1.19815 0.93444 0.93320 0.87025 1.21204 1.26737 1.15954 0.89979 0.91857 1.24979 0.95345 0.95172 0.99218 1.69969 1.34500 1.24021 1.25649 0.86472 0.78723 0.79101 0.83329 1.19628 1.21247 1.21064 1.22775 0.96555 0.99278 0.92504 1.21839 0.83412 0.99192 0.89432 0.89199 1.86590 1.27037 1.28136 1.91925 1.22885 0.93876 1.00633 0.93242 1.61811 1.52722 1.03102 1.07301 1.22131 0.96776 0.88888 0.99642 1.21571 1.00185 0.98743 0.94900 1.21580 1.01338 0.95523 0.97434 1.21573 0.99980 0.95915 0.97918 1.22089 0.97049 0.97990 0.90180 0.93599 0.93965 0.90943 0.90272 0.93352 0.98438 0.95645 0.93105 0.91420 0.94898 0.78783 0.90513 0.94530 0.95490 0.90202 0.90830 0.91791 0.91996 0.92585 0.90950 0.91881 0.90920 0.95434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.44 9.20 37.16 0.34 -3.10 16 2 C 0.06 1.23 5.73 -3.83 -0.02 1.21 16 3 N -0.52 -11.16 4.54 -236.06 -1.07 -12.23 16 4 C 0.19 4.87 4.39 -4.97 -0.02 4.84 16 5 C -0.50 -14.08 8.56 -34.44 -0.29 -14.37 16 6 H 0.06 1.79 7.10 -52.49 -0.37 1.42 16 7 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 9 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.02 0.32 4.54 -3.82 -0.02 0.31 16 14 C 0.12 1.82 2.92 -26.73 -0.08 1.74 16 15 H 0.09 1.41 5.06 -51.93 -0.26 1.15 16 16 O -0.53 -8.91 13.11 -35.23 -0.46 -9.37 16 17 C 0.02 0.27 4.62 -3.82 -0.02 0.26 16 18 N -0.52 -6.23 4.52 -234.67 -1.06 -7.29 16 19 C 0.05 0.60 5.29 -3.83 -0.02 0.58 16 20 C -0.12 -1.13 6.09 -26.65 -0.16 -1.29 16 21 C -0.12 -1.03 6.00 -26.61 -0.16 -1.19 16 22 C -0.12 -1.02 6.09 -26.65 -0.16 -1.18 16 23 C 0.05 0.55 5.46 -3.83 -0.02 0.53 16 24 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.71 6.24 -51.93 -0.32 0.39 16 26 H 0.07 1.54 6.39 -51.93 -0.33 1.21 16 27 H 0.08 1.69 6.96 -51.93 -0.36 1.33 16 28 H 0.05 0.84 6.67 -51.93 -0.35 0.49 16 29 H 0.00 -0.06 5.97 -51.93 -0.31 -0.37 16 30 H 0.03 0.71 7.82 -51.93 -0.41 0.30 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.07 1.18 7.73 -51.93 -0.40 0.78 16 33 H 0.03 0.55 5.98 -51.93 -0.31 0.24 16 34 H 0.37 5.19 9.04 45.56 0.41 5.61 16 35 H 0.08 0.89 7.99 -51.93 -0.41 0.48 16 36 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 37 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.08 0.99 6.21 -51.93 -0.32 0.67 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.69 8.02 -51.93 -0.42 0.28 16 46 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -30.50 347.56 -9.90 -40.40 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.53 Total: 2.70 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -0.73 Total: -10.24 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -1.40 Total: -45.59 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.46 Total: -9.37 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.50 -9.90 -40.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383847195.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.174 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds