Wall clock time and date at job start Mon Mar 30 2020 04:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 109.47417 * 2 1 4 4 C 1.46897 * 111.00048 * 303.61372 * 3 2 1 5 5 C 1.50712 * 109.46913 * 293.95049 * 4 3 2 6 6 H 1.07997 * 119.99485 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00018 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00157 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99909 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46695 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47126 * 119.99873 * 9 7 5 12 12 H 1.48494 * 109.46927 * 239.99923 * 9 7 5 13 13 C 1.46906 * 110.99708 * 67.56208 * 3 2 1 14 14 C 1.53002 * 109.46966 * 76.19249 * 13 3 2 15 15 H 1.08994 * 109.46988 * 302.25311 * 14 13 3 16 16 O 1.42901 * 109.47294 * 62.25370 * 14 13 3 17 17 C 1.53002 * 109.46842 * 182.25249 * 14 13 3 18 18 N 1.46900 * 109.47018 * 179.97438 * 17 14 13 19 19 C 1.46844 * 111.00159 * 294.21492 * 18 17 14 20 20 C 1.53039 * 109.52526 * 174.15910 * 19 18 17 21 21 C 1.53124 * 109.27690 * 59.17628 * 20 19 18 22 22 C 1.53114 * 109.16145 * 302.34810 * 21 20 19 23 23 C 1.46843 * 110.99767 * 170.00271 * 18 17 14 24 24 H 1.09001 * 109.47236 * 182.89364 * 1 2 3 25 25 H 1.08996 * 109.47171 * 302.89661 * 1 2 3 26 26 H 1.09001 * 109.46956 * 62.89618 * 1 2 3 27 27 H 1.09005 * 109.47450 * 239.99856 * 2 1 3 28 28 H 1.09004 * 109.47221 * 120.00235 * 2 1 3 29 29 H 1.08998 * 109.47476 * 53.94703 * 4 3 2 30 30 H 1.08997 * 109.47306 * 173.95653 * 4 3 2 31 31 H 0.96994 * 119.99528 * 180.02562 * 8 7 5 32 32 H 1.09006 * 109.46937 * 196.18810 * 13 3 2 33 33 H 1.08993 * 109.47142 * 316.18572 * 13 3 2 34 34 H 0.96698 * 113.99702 * 59.99832 * 16 14 13 35 35 H 1.08994 * 109.47380 * 299.99823 * 17 14 13 36 36 H 1.08997 * 109.47065 * 60.00033 * 17 14 13 37 37 H 1.09004 * 109.45880 * 294.17645 * 19 18 17 38 38 H 1.09002 * 109.46765 * 54.13975 * 19 18 17 39 39 H 1.08997 * 109.50113 * 299.24021 * 20 19 18 40 40 H 1.08995 * 109.50531 * 179.11335 * 20 19 18 41 41 H 1.08991 * 109.52193 * 182.43747 * 21 20 19 42 42 H 1.09003 * 109.52089 * 62.24928 * 21 20 19 43 43 H 1.09000 * 109.50746 * 297.71410 * 22 21 20 44 44 H 1.08996 * 109.50546 * 177.59223 * 22 21 20 45 45 H 1.08999 * 109.46323 * 305.85019 * 23 18 17 46 46 H 1.08992 * 109.46579 * 65.82926 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4795 2.1344 -1.1421 5 6 2.0269 1.5605 -2.4237 6 1 2.7076 0.7227 -2.3927 7 6 1.6578 2.1045 -3.6356 8 7 0.8276 3.1239 -3.6733 9 14 2.3358 1.3928 -5.2241 10 1 3.2411 0.2580 -4.9113 11 1 1.2137 0.9117 -6.0696 12 1 3.0909 2.4425 -5.9541 13 6 1.7017 2.0557 1.2677 14 6 2.6604 1.5696 2.3564 15 1 2.5833 0.4865 2.4513 16 8 3.9996 1.9227 2.0043 17 6 2.2936 2.2258 3.6890 18 7 3.2138 1.7586 4.7345 19 6 3.0388 0.3225 4.9863 20 6 4.1071 -0.1580 5.9711 21 6 3.9789 0.6279 7.2791 22 6 4.1167 2.1236 6.9822 23 6 3.0481 2.5380 5.9680 24 1 -0.3634 -1.0264 0.0519 25 1 -0.3633 0.5581 0.8628 26 1 -0.3633 0.4682 -0.9148 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.3922 2.0581 -1.1452 30 1 1.7701 3.1816 -1.0597 31 1 0.5677 3.5063 -4.5260 32 1 1.8078 3.1336 1.1450 33 1 0.6767 1.8220 1.5552 34 1 4.1418 2.8738 1.9027 35 1 2.3708 3.3089 3.5941 36 1 1.2722 1.9565 3.9577 37 1 2.0496 0.1458 5.4086 38 1 3.1364 -0.2251 4.0489 39 1 5.0962 0.0059 5.5436 40 1 3.9672 -1.2205 6.1699 41 1 4.7652 0.3193 7.9679 42 1 3.0042 0.4336 7.7267 43 1 5.1060 2.3234 6.5705 44 1 3.9837 2.6912 7.9032 45 1 3.1526 3.5995 5.7436 46 1 2.0590 2.3509 6.3858 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383847195.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:30 Heat of formation + Delta-G solvation = -75.160736 kcal Electronic energy + Delta-G solvation = -21857.324047 eV Core-core repulsion = 18780.456858 eV Total energy + Delta-G solvation = -3076.867189 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.34092 -39.13529 -37.22353 -34.67756 -34.30384 -31.78557 -31.43889 -30.65675 -28.50740 -26.19409 -25.15318 -24.25654 -23.77130 -22.11242 -20.91240 -20.55239 -18.38726 -17.45973 -17.26450 -16.66538 -16.49847 -16.28222 -15.90811 -15.52899 -15.34544 -15.07969 -14.62953 -14.52659 -14.24156 -14.03861 -13.64723 -13.46684 -13.15559 -13.09902 -12.79553 -12.65515 -12.60269 -12.53903 -12.45269 -12.10258 -11.96486 -11.79732 -11.58692 -11.47382 -11.34098 -11.26884 -11.12888 -10.59775 -10.58660 -9.18268 -8.80704 -8.17908 -6.26275 1.40053 1.41302 1.54656 2.41382 2.80485 3.14614 3.37751 3.73886 3.87463 3.91509 4.02622 4.05880 4.15472 4.28990 4.33311 4.35712 4.41921 4.48972 4.53113 4.59493 4.64625 4.68102 4.70383 4.75185 4.88687 4.94974 4.97380 5.00930 5.06452 5.10322 5.20321 5.24757 5.25503 5.32581 5.39513 5.49614 5.50650 5.69915 6.09432 6.14585 6.22745 6.41609 6.71559 6.90462 7.08020 7.42965 8.92840 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.036867 B = 0.003542 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.295093 B = 7903.180154 C = 7981.197954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.063 3.937 3 N -0.534 5.534 4 C 0.206 3.794 5 C -0.515 4.515 6 H 0.057 0.943 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.964 3.036 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.021 3.979 14 C 0.134 3.866 15 H 0.085 0.915 16 O -0.553 6.553 17 C 0.032 3.968 18 N -0.538 5.538 19 C 0.052 3.948 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.114 4.114 23 C 0.053 3.947 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.034 0.966 27 H 0.056 0.944 28 H 0.076 0.924 29 H -0.021 1.021 30 H -0.003 1.003 31 H 0.263 0.737 32 H 0.062 0.938 33 H 0.043 0.957 34 H 0.375 0.625 35 H 0.084 0.916 36 H 0.044 0.956 37 H 0.032 0.968 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.683 -3.892 21.893 22.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.066 4.066 3 N -0.257 5.257 4 C 0.080 3.920 5 C -0.554 4.554 6 H 0.075 0.925 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.789 3.211 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.205 1.205 13 C -0.108 4.108 14 C 0.074 3.926 15 H 0.103 0.897 16 O -0.358 6.358 17 C -0.097 4.097 18 N -0.262 5.262 19 C -0.076 4.076 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.152 4.152 23 C -0.074 4.074 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.094 0.906 29 H -0.004 1.004 30 H 0.015 0.985 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.223 0.777 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.678 -4.364 21.593 22.334 hybrid contribution -1.836 0.556 -0.955 2.143 sum 1.842 -3.808 20.637 21.066 Atomic orbital electron populations 1.22262 0.98391 1.02164 1.00844 1.21966 0.92834 0.90522 1.01238 1.62112 1.59369 1.02424 1.01810 1.19434 0.92097 0.92139 0.88353 1.21476 1.26670 1.15850 0.91380 0.92516 1.25834 0.95542 0.95454 1.02720 1.70081 1.35602 1.25206 1.26680 0.85413 0.78225 0.78484 0.78982 1.19026 1.20434 1.20468 1.22844 0.97875 0.98769 0.91341 1.21707 0.82050 0.99014 0.89856 0.89675 1.86551 1.27931 1.29176 1.92141 1.22701 0.94307 1.00733 0.91950 1.61796 1.52701 1.03657 1.08092 1.22146 0.97608 0.88484 0.99363 1.21561 0.98816 0.99713 0.95144 1.21575 1.02121 0.95043 0.96873 1.21574 0.98934 0.96433 0.98235 1.22160 0.97725 0.97935 0.89601 0.90835 0.92605 0.94637 0.92552 0.90610 1.00389 0.98496 0.92833 0.91951 0.93934 0.77733 0.89779 0.93786 0.94954 0.91723 0.92222 0.90617 0.90806 0.91985 0.91965 0.90100 0.90579 0.94992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.36 9.20 71.98 0.66 -5.70 16 2 C 0.06 2.42 5.73 86.30 0.49 2.92 16 3 N -0.53 -23.07 4.54 -900.77 -4.09 -27.16 16 4 C 0.21 10.95 4.39 85.56 0.38 11.33 16 5 C -0.52 -29.66 8.56 25.60 0.22 -29.44 16 6 H 0.06 3.27 7.10 -2.91 -0.02 3.25 16 7 C 0.00 0.12 5.46 84.65 0.46 0.58 16 8 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 9 Si 0.96 45.19 29.54 68.60 2.03 47.21 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 C 0.02 0.72 4.54 86.30 0.39 1.11 16 14 C 0.13 3.88 2.92 30.60 0.09 3.97 16 15 H 0.09 2.56 5.06 -2.39 -0.01 2.55 16 16 O -0.55 -18.18 13.11 -148.98 -1.95 -20.13 16 17 C 0.03 0.73 4.62 86.30 0.40 1.13 16 18 N -0.54 -11.91 4.52 -896.37 -4.05 -15.96 16 19 C 0.05 1.09 5.29 86.33 0.46 1.54 16 20 C -0.11 -2.03 6.09 30.65 0.19 -1.85 16 21 C -0.12 -1.73 6.00 30.67 0.18 -1.55 16 22 C -0.11 -1.75 6.09 30.65 0.19 -1.56 16 23 C 0.05 0.96 5.46 86.33 0.47 1.43 16 24 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.06 1.82 6.24 -2.39 -0.01 1.80 16 26 H 0.03 1.52 6.39 -2.39 -0.02 1.51 16 27 H 0.06 2.42 6.96 -2.38 -0.02 2.41 16 28 H 0.08 2.52 6.67 -2.39 -0.02 2.50 16 29 H -0.02 -1.21 5.97 -2.39 -0.01 -1.22 16 30 H 0.00 -0.18 7.82 -2.39 -0.02 -0.20 16 31 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.06 2.19 7.73 -2.38 -0.02 2.18 16 33 H 0.04 1.39 5.98 -2.39 -0.01 1.37 16 34 H 0.38 10.54 9.04 -74.06 -0.67 9.87 16 35 H 0.08 1.81 7.99 -2.39 -0.02 1.79 16 36 H 0.04 0.96 8.12 -2.39 -0.02 0.94 16 37 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.06 1.54 6.21 -2.39 -0.01 1.52 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.08 1.30 8.02 -2.39 -0.02 1.28 16 46 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -65.78 347.56 -2.93 -68.71 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.27 Total: 19.71 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 4.58 Total: -16.08 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -7.86 Total: -99.42 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -1.95 Total: -20.13 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -65.78 -2.93 -68.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383847195.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.449 kcal (2) G-P(sol) polarization free energy of solvation -65.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds