Wall clock time and date at job start Mon Mar 30 2020 04:41:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46896 * 109.47417 * 2 1
4 4 C 1.46897 * 111.00048 * 303.61372 * 3 2 1
5 5 C 1.50712 * 109.46913 * 293.95049 * 4 3 2
6 6 H 1.07997 * 119.99485 * 0.02562 * 5 4 3
7 7 C 1.37872 * 120.00018 * 179.97438 * 5 4 3
8 8 N 1.31519 * 120.00157 * 359.97438 * 7 5 4
9 9 Si 1.86806 * 119.99909 * 180.02562 * 7 5 4
10 10 H 1.48503 * 109.46695 * 0.02562 * 9 7 5
11 11 H 1.48500 * 109.47126 * 119.99873 * 9 7 5
12 12 H 1.48494 * 109.46927 * 239.99923 * 9 7 5
13 13 C 1.46906 * 110.99708 * 67.56208 * 3 2 1
14 14 C 1.53002 * 109.46966 * 76.19249 * 13 3 2
15 15 H 1.08994 * 109.46988 * 302.25311 * 14 13 3
16 16 O 1.42901 * 109.47294 * 62.25370 * 14 13 3
17 17 C 1.53002 * 109.46842 * 182.25249 * 14 13 3
18 18 N 1.46900 * 109.47018 * 179.97438 * 17 14 13
19 19 C 1.46844 * 111.00159 * 294.21492 * 18 17 14
20 20 C 1.53039 * 109.52526 * 174.15910 * 19 18 17
21 21 C 1.53124 * 109.27690 * 59.17628 * 20 19 18
22 22 C 1.53114 * 109.16145 * 302.34810 * 21 20 19
23 23 C 1.46843 * 110.99767 * 170.00271 * 18 17 14
24 24 H 1.09001 * 109.47236 * 182.89364 * 1 2 3
25 25 H 1.08996 * 109.47171 * 302.89661 * 1 2 3
26 26 H 1.09001 * 109.46956 * 62.89618 * 1 2 3
27 27 H 1.09005 * 109.47450 * 239.99856 * 2 1 3
28 28 H 1.09004 * 109.47221 * 120.00235 * 2 1 3
29 29 H 1.08998 * 109.47476 * 53.94703 * 4 3 2
30 30 H 1.08997 * 109.47306 * 173.95653 * 4 3 2
31 31 H 0.96994 * 119.99528 * 180.02562 * 8 7 5
32 32 H 1.09006 * 109.46937 * 196.18810 * 13 3 2
33 33 H 1.08993 * 109.47142 * 316.18572 * 13 3 2
34 34 H 0.96698 * 113.99702 * 59.99832 * 16 14 13
35 35 H 1.08994 * 109.47380 * 299.99823 * 17 14 13
36 36 H 1.08997 * 109.47065 * 60.00033 * 17 14 13
37 37 H 1.09004 * 109.45880 * 294.17645 * 19 18 17
38 38 H 1.09002 * 109.46765 * 54.13975 * 19 18 17
39 39 H 1.08997 * 109.50113 * 299.24021 * 20 19 18
40 40 H 1.08995 * 109.50531 * 179.11335 * 20 19 18
41 41 H 1.08991 * 109.52193 * 182.43747 * 21 20 19
42 42 H 1.09003 * 109.52089 * 62.24928 * 21 20 19
43 43 H 1.09000 * 109.50746 * 297.71410 * 22 21 20
44 44 H 1.08996 * 109.50546 * 177.59223 * 22 21 20
45 45 H 1.08999 * 109.46323 * 305.85019 * 23 18 17
46 46 H 1.08992 * 109.46579 * 65.82926 * 23 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3849 0.0000
4 6 1.4795 2.1344 -1.1421
5 6 2.0269 1.5605 -2.4237
6 1 2.7076 0.7227 -2.3927
7 6 1.6578 2.1045 -3.6356
8 7 0.8276 3.1239 -3.6733
9 14 2.3358 1.3928 -5.2241
10 1 3.2411 0.2580 -4.9113
11 1 1.2137 0.9117 -6.0696
12 1 3.0909 2.4425 -5.9541
13 6 1.7017 2.0557 1.2677
14 6 2.6604 1.5696 2.3564
15 1 2.5833 0.4865 2.4513
16 8 3.9996 1.9227 2.0043
17 6 2.2936 2.2258 3.6890
18 7 3.2138 1.7586 4.7345
19 6 3.0388 0.3225 4.9863
20 6 4.1071 -0.1580 5.9711
21 6 3.9789 0.6279 7.2791
22 6 4.1167 2.1236 6.9822
23 6 3.0481 2.5380 5.9680
24 1 -0.3634 -1.0264 0.0519
25 1 -0.3633 0.5581 0.8628
26 1 -0.3633 0.4682 -0.9148
27 1 1.8934 -0.5139 -0.8900
28 1 1.8933 -0.5139 0.8900
29 1 0.3922 2.0581 -1.1452
30 1 1.7701 3.1816 -1.0597
31 1 0.5677 3.5063 -4.5260
32 1 1.8078 3.1336 1.1450
33 1 0.6767 1.8220 1.5552
34 1 4.1418 2.8738 1.9027
35 1 2.3708 3.3089 3.5941
36 1 1.2722 1.9565 3.9577
37 1 2.0496 0.1458 5.4086
38 1 3.1364 -0.2251 4.0489
39 1 5.0962 0.0059 5.5436
40 1 3.9672 -1.2205 6.1699
41 1 4.7652 0.3193 7.9679
42 1 3.0042 0.4336 7.7267
43 1 5.1060 2.3234 6.5705
44 1 3.9837 2.6912 7.9032
45 1 3.1526 3.5995 5.7436
46 1 2.0590 2.3509 6.3858
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000383847195.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:41:30
Heat of formation + Delta-G solvation = -75.160736 kcal
Electronic energy + Delta-G solvation = -21857.324047 eV
Core-core repulsion = 18780.456858 eV
Total energy + Delta-G solvation = -3076.867189 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-40.34092 -39.13529 -37.22353 -34.67756 -34.30384 -31.78557 -31.43889 -30.65675
-28.50740 -26.19409 -25.15318 -24.25654 -23.77130 -22.11242 -20.91240 -20.55239
-18.38726 -17.45973 -17.26450 -16.66538 -16.49847 -16.28222 -15.90811 -15.52899
-15.34544 -15.07969 -14.62953 -14.52659 -14.24156 -14.03861 -13.64723 -13.46684
-13.15559 -13.09902 -12.79553 -12.65515 -12.60269 -12.53903 -12.45269 -12.10258
-11.96486 -11.79732 -11.58692 -11.47382 -11.34098 -11.26884 -11.12888 -10.59775
-10.58660 -9.18268 -8.80704 -8.17908 -6.26275 1.40053 1.41302 1.54656
2.41382 2.80485 3.14614 3.37751 3.73886 3.87463 3.91509 4.02622
4.05880 4.15472 4.28990 4.33311 4.35712 4.41921 4.48972 4.53113
4.59493 4.64625 4.68102 4.70383 4.75185 4.88687 4.94974 4.97380
5.00930 5.06452 5.10322 5.20321 5.24757 5.25503 5.32581 5.39513
5.49614 5.50650 5.69915 6.09432 6.14585 6.22745 6.41609 6.71559
6.90462 7.08020 7.42965 8.92840
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.036867 B = 0.003542 C = 0.003507
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 759.295093 B = 7903.180154 C = 7981.197954
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.063 3.937
3 N -0.534 5.534
4 C 0.206 3.794
5 C -0.515 4.515
6 H 0.057 0.943
7 C 0.002 3.998
8 N -0.935 5.935
9 Si 0.964 3.036
10 H -0.266 1.266
11 H -0.279 1.279
12 H -0.279 1.279
13 C 0.021 3.979
14 C 0.134 3.866
15 H 0.085 0.915
16 O -0.553 6.553
17 C 0.032 3.968
18 N -0.538 5.538
19 C 0.052 3.948
20 C -0.115 4.115
21 C -0.119 4.119
22 C -0.114 4.114
23 C 0.053 3.947
24 H 0.073 0.927
25 H 0.055 0.945
26 H 0.034 0.966
27 H 0.056 0.944
28 H 0.076 0.924
29 H -0.021 1.021
30 H -0.003 1.003
31 H 0.263 0.737
32 H 0.062 0.938
33 H 0.043 0.957
34 H 0.375 0.625
35 H 0.084 0.916
36 H 0.044 0.956
37 H 0.032 0.968
38 H 0.064 0.936
39 H 0.059 0.941
40 H 0.075 0.925
41 H 0.073 0.927
42 H 0.061 0.939
43 H 0.062 0.938
44 H 0.080 0.920
45 H 0.076 0.924
46 H 0.032 0.968
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.683 -3.892 21.893 22.397
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C -0.066 4.066
3 N -0.257 5.257
4 C 0.080 3.920
5 C -0.554 4.554
6 H 0.075 0.925
7 C -0.196 4.196
8 N -0.576 5.576
9 Si 0.789 3.211
10 H -0.190 1.190
11 H -0.204 1.204
12 H -0.205 1.205
13 C -0.108 4.108
14 C 0.074 3.926
15 H 0.103 0.897
16 O -0.358 6.358
17 C -0.097 4.097
18 N -0.262 5.262
19 C -0.076 4.076
20 C -0.152 4.152
21 C -0.156 4.156
22 C -0.152 4.152
23 C -0.074 4.074
24 H 0.092 0.908
25 H 0.074 0.926
26 H 0.054 0.946
27 H 0.074 0.926
28 H 0.094 0.906
29 H -0.004 1.004
30 H 0.015 0.985
31 H 0.072 0.928
32 H 0.080 0.920
33 H 0.061 0.939
34 H 0.223 0.777
35 H 0.102 0.898
36 H 0.062 0.938
37 H 0.050 0.950
38 H 0.083 0.917
39 H 0.078 0.922
40 H 0.094 0.906
41 H 0.092 0.908
42 H 0.080 0.920
43 H 0.080 0.920
44 H 0.099 0.901
45 H 0.094 0.906
46 H 0.050 0.950
Dipole moment (debyes) X Y Z Total
from point charges 3.678 -4.364 21.593 22.334
hybrid contribution -1.836 0.556 -0.955 2.143
sum 1.842 -3.808 20.637 21.066
Atomic orbital electron populations
1.22262 0.98391 1.02164 1.00844 1.21966 0.92834 0.90522 1.01238
1.62112 1.59369 1.02424 1.01810 1.19434 0.92097 0.92139 0.88353
1.21476 1.26670 1.15850 0.91380 0.92516 1.25834 0.95542 0.95454
1.02720 1.70081 1.35602 1.25206 1.26680 0.85413 0.78225 0.78484
0.78982 1.19026 1.20434 1.20468 1.22844 0.97875 0.98769 0.91341
1.21707 0.82050 0.99014 0.89856 0.89675 1.86551 1.27931 1.29176
1.92141 1.22701 0.94307 1.00733 0.91950 1.61796 1.52701 1.03657
1.08092 1.22146 0.97608 0.88484 0.99363 1.21561 0.98816 0.99713
0.95144 1.21575 1.02121 0.95043 0.96873 1.21574 0.98934 0.96433
0.98235 1.22160 0.97725 0.97935 0.89601 0.90835 0.92605 0.94637
0.92552 0.90610 1.00389 0.98496 0.92833 0.91951 0.93934 0.77733
0.89779 0.93786 0.94954 0.91723 0.92222 0.90617 0.90806 0.91985
0.91965 0.90100 0.90579 0.94992
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -6.36 9.20 71.98 0.66 -5.70 16
2 C 0.06 2.42 5.73 86.30 0.49 2.92 16
3 N -0.53 -23.07 4.54 -900.77 -4.09 -27.16 16
4 C 0.21 10.95 4.39 85.56 0.38 11.33 16
5 C -0.52 -29.66 8.56 25.60 0.22 -29.44 16
6 H 0.06 3.27 7.10 -2.91 -0.02 3.25 16
7 C 0.00 0.12 5.46 84.65 0.46 0.58 16
8 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16
9 Si 0.96 45.19 29.54 68.60 2.03 47.21 16
10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16
11 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16
12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16
13 C 0.02 0.72 4.54 86.30 0.39 1.11 16
14 C 0.13 3.88 2.92 30.60 0.09 3.97 16
15 H 0.09 2.56 5.06 -2.39 -0.01 2.55 16
16 O -0.55 -18.18 13.11 -148.98 -1.95 -20.13 16
17 C 0.03 0.73 4.62 86.30 0.40 1.13 16
18 N -0.54 -11.91 4.52 -896.37 -4.05 -15.96 16
19 C 0.05 1.09 5.29 86.33 0.46 1.54 16
20 C -0.11 -2.03 6.09 30.65 0.19 -1.85 16
21 C -0.12 -1.73 6.00 30.67 0.18 -1.55 16
22 C -0.11 -1.75 6.09 30.65 0.19 -1.56 16
23 C 0.05 0.96 5.46 86.33 0.47 1.43 16
24 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16
25 H 0.06 1.82 6.24 -2.39 -0.01 1.80 16
26 H 0.03 1.52 6.39 -2.39 -0.02 1.51 16
27 H 0.06 2.42 6.96 -2.38 -0.02 2.41 16
28 H 0.08 2.52 6.67 -2.39 -0.02 2.50 16
29 H -0.02 -1.21 5.97 -2.39 -0.01 -1.22 16
30 H 0.00 -0.18 7.82 -2.39 -0.02 -0.20 16
31 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16
32 H 0.06 2.19 7.73 -2.38 -0.02 2.18 16
33 H 0.04 1.39 5.98 -2.39 -0.01 1.37 16
34 H 0.38 10.54 9.04 -74.06 -0.67 9.87 16
35 H 0.08 1.81 7.99 -2.39 -0.02 1.79 16
36 H 0.04 0.96 8.12 -2.39 -0.02 0.94 16
37 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16
38 H 0.06 1.54 6.21 -2.39 -0.01 1.52 16
39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16
40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16
41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16
42 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16
43 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16
44 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16
45 H 0.08 1.30 8.02 -2.39 -0.02 1.28 16
46 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16
Total: -1.00 -65.78 347.56 -2.93 -68.71
By element:
Atomic # 1 Polarization: 19.43 SS G_CDS: 0.27 Total: 19.71 kcal
Atomic # 6 Polarization: -20.66 SS G_CDS: 4.58 Total: -16.08 kcal
Atomic # 7 Polarization: -91.56 SS G_CDS: -7.86 Total: -99.42 kcal
Atomic # 8 Polarization: -18.18 SS G_CDS: -1.95 Total: -20.13 kcal
Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal
Total: -65.78 -2.93 -68.71 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000383847195.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.449 kcal
(2) G-P(sol) polarization free energy of solvation -65.781 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.230 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.931 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.712 kcal
(6) G-S(sol) free energy of system = (1) + (5) -75.161 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds