Wall clock time and date at job start Mon Mar 30 2020 04:41:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46899 * 109.47043 * 2 1
4 4 C 1.46896 * 110.99783 * 288.52069 * 3 2 1
5 5 C 1.50704 * 109.46812 * 160.37674 * 4 3 2
6 6 H 1.07998 * 119.99935 * 3.60257 * 5 4 3
7 7 C 1.37883 * 119.99964 * 183.59810 * 5 4 3
8 8 N 1.31515 * 119.99964 * 0.02562 * 7 5 4
9 9 Si 1.86792 * 119.99929 * 180.02562 * 7 5 4
10 10 H 1.48505 * 109.46930 * 90.00222 * 9 7 5
11 11 H 1.48506 * 109.47149 * 209.99953 * 9 7 5
12 12 H 1.48502 * 109.47535 * 330.00230 * 9 7 5
13 13 C 1.46906 * 110.99733 * 164.57472 * 3 2 1
14 14 C 1.53001 * 109.46962 * 293.94737 * 13 3 2
15 15 H 1.09004 * 109.47015 * 60.00759 * 14 13 3
16 16 O 1.42898 * 109.47464 * 300.00581 * 14 13 3
17 17 C 1.52999 * 109.47290 * 180.02562 * 14 13 3
18 18 N 1.46894 * 109.47401 * 182.94803 * 17 14 13
19 19 C 1.46854 * 110.99941 * 198.93657 * 18 17 14
20 20 C 1.53038 * 109.52190 * 174.16084 * 19 18 17
21 21 C 1.53120 * 109.27957 * 59.17693 * 20 19 18
22 22 C 1.53119 * 109.15953 * 302.34496 * 21 20 19
23 23 C 1.46839 * 111.00086 * 74.72245 * 18 17 14
24 24 H 1.09000 * 109.47190 * 186.23309 * 1 2 3
25 25 H 1.08993 * 109.47129 * 306.23698 * 1 2 3
26 26 H 1.08997 * 109.46584 * 66.23797 * 1 2 3
27 27 H 1.08994 * 109.47325 * 239.99683 * 2 1 3
28 28 H 1.09010 * 109.47014 * 119.99714 * 2 1 3
29 29 H 1.08993 * 109.47906 * 280.37939 * 4 3 2
30 30 H 1.09000 * 109.46771 * 40.38465 * 4 3 2
31 31 H 0.96997 * 119.99927 * 179.97438 * 8 7 5
32 32 H 1.09004 * 109.47065 * 173.95584 * 13 3 2
33 33 H 1.08995 * 109.47665 * 53.94963 * 13 3 2
34 34 H 0.96704 * 113.99636 * 299.99569 * 16 14 13
35 35 H 1.09001 * 109.47407 * 302.95246 * 17 14 13
36 36 H 1.09007 * 109.46883 * 62.94943 * 17 14 13
37 37 H 1.08997 * 109.45987 * 294.16856 * 19 18 17
38 38 H 1.08995 * 109.46239 * 54.14459 * 19 18 17
39 39 H 1.09006 * 109.50367 * 299.23578 * 20 19 18
40 40 H 1.08999 * 109.50293 * 179.11849 * 20 19 18
41 41 H 1.09001 * 109.52209 * 182.44448 * 21 20 19
42 42 H 1.08994 * 109.57610 * 62.28011 * 21 20 19
43 43 H 1.09002 * 109.50309 * 297.70938 * 22 21 20
44 44 H 1.09005 * 109.50408 * 177.59926 * 22 21 20
45 45 H 1.08997 * 109.46549 * 305.85764 * 23 18 17
46 46 H 1.09001 * 109.46555 * 65.82566 * 23 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.7844 2.0265 -1.3004
5 6 1.8375 3.5239 -1.1387
6 1 2.0844 3.9550 -0.1798
7 6 1.5708 4.3434 -2.2150
8 7 1.2697 3.8183 -3.3826
9 14 1.6373 6.1993 -2.0148
10 1 3.0119 6.6797 -2.3066
11 1 0.6808 6.8335 -2.9573
12 1 1.2722 6.5604 -0.6214
13 6 3.4416 1.4406 0.3648
14 6 3.6131 0.9940 1.8181
15 1 3.2491 -0.0274 1.9297
16 8 2.8673 1.8616 2.6743
17 6 5.0939 1.0525 2.1983
18 7 5.2672 0.5570 3.5702
19 6 6.5501 0.9995 4.1315
20 6 6.6325 0.5903 5.6038
21 6 6.5038 -0.9316 5.7136
22 6 5.1817 -1.3712 5.0786
23 6 5.1412 -0.9051 3.6215
24 1 -0.3633 -1.0216 0.1116
25 1 -0.3633 0.6074 0.8288
26 1 -0.3632 0.4141 -0.9405
27 1 1.8934 -0.5138 -0.8899
28 1 1.8934 -0.5138 0.8901
29 1 2.5523 1.7098 -2.0061
30 1 0.8033 1.7362 -1.6764
31 1 1.0818 4.3948 -4.1397
32 1 3.8056 2.4620 0.2533
33 1 4.0105 0.7788 -0.2882
34 1 3.1380 2.7888 2.6269
35 1 5.6701 0.4316 1.5122
36 1 5.4443 2.0829 2.1372
37 1 7.3674 0.5355 3.5794
38 1 6.6270 2.0837 4.0510
39 1 5.8236 1.0649 6.1593
40 1 7.5913 0.9051 6.0159
41 1 6.5185 -1.2236 6.7636
42 1 7.3343 -1.4069 5.1917
43 1 4.3499 -0.9275 5.6259
44 1 5.1038 -2.4578 5.1155
45 1 4.1950 -1.2042 3.1707
46 1 5.9651 -1.3602 3.0718
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000383847208.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:41:33
Heat of formation + Delta-G solvation = -56.063994 kcal
Electronic energy + Delta-G solvation = -21882.511037 eV
Core-core repulsion = 18806.471945 eV
Total energy + Delta-G solvation = -3076.039092 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-39.28516 -37.63187 -35.59861 -33.37243 -32.58002 -30.97979 -30.48723 -29.06274
-26.80114 -24.89328 -23.29779 -22.79335 -22.55385 -20.93087 -19.84658 -19.55430
-16.59012 -16.26732 -15.73741 -15.43576 -15.07492 -14.63599 -14.45709 -14.37191
-14.12655 -13.79994 -13.44583 -13.24857 -13.15026 -12.83987 -12.33692 -12.18241
-11.62953 -11.51188 -11.34383 -11.30679 -11.22287 -10.92571 -10.85413 -10.78182
-10.71737 -10.54674 -10.51927 -10.31935 -10.09295 -9.75500 -9.26208 -9.13047
-8.38629 -8.24239 -7.14098 -5.98911 -3.99644 3.33030 3.39755 3.44532
3.77271 4.44956 4.64433 4.67901 4.74530 4.86670 4.96178 5.13018
5.20462 5.28852 5.36507 5.37031 5.39531 5.47824 5.57676 5.64049
5.70283 5.73700 5.77409 5.81210 5.83468 5.88873 5.98585 6.01395
6.06439 6.16712 6.23627 6.35229 6.39436 6.61136 6.67071 6.91297
7.05864 7.09624 7.29225 7.37847 7.86257 8.16000 8.25260 8.34526
8.60765 9.08162 9.64143 11.11739
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.023393 B = 0.004195 C = 0.003740
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1196.673541 B = 6672.456442 C = 7484.352216
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.051 3.949
3 N -0.522 5.522
4 C 0.190 3.810
5 C -0.500 4.500
6 H 0.063 0.937
7 C 0.053 3.947
8 N -0.901 5.901
9 Si 0.896 3.104
10 H -0.283 1.283
11 H -0.287 1.287
12 H -0.272 1.272
13 C 0.032 3.968
14 C 0.121 3.879
15 H 0.088 0.912
16 O -0.535 6.535
17 C 0.022 3.978
18 N -0.525 5.525
19 C 0.055 3.945
20 C -0.116 4.116
21 C -0.121 4.121
22 C -0.116 4.116
23 C 0.055 3.945
24 H 0.043 0.957
25 H 0.061 0.939
26 H 0.056 0.944
27 H 0.017 0.983
28 H 0.057 0.943
29 H -0.014 1.014
30 H 0.036 0.964
31 H 0.260 0.740
32 H 0.083 0.917
33 H 0.022 0.978
34 H 0.368 0.632
35 H 0.039 0.961
36 H 0.077 0.923
37 H 0.027 0.973
38 H 0.073 0.927
39 H 0.072 0.928
40 H 0.063 0.937
41 H 0.061 0.939
42 H 0.055 0.945
43 H 0.073 0.927
44 H 0.063 0.937
45 H 0.076 0.924
46 H 0.028 0.972
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.099 -9.369 14.570 20.051
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.078 4.078
3 N -0.246 5.246
4 C 0.065 3.935
5 C -0.539 4.539
6 H 0.081 0.919
7 C -0.148 4.148
8 N -0.541 5.541
9 Si 0.724 3.276
10 H -0.209 1.209
11 H -0.213 1.213
12 H -0.197 1.197
13 C -0.097 4.097
14 C 0.060 3.940
15 H 0.106 0.894
16 O -0.338 6.338
17 C -0.106 4.106
18 N -0.250 5.250
19 C -0.073 4.073
20 C -0.154 4.154
21 C -0.158 4.158
22 C -0.154 4.154
23 C -0.073 4.073
24 H 0.062 0.938
25 H 0.081 0.919
26 H 0.075 0.925
27 H 0.035 0.965
28 H 0.075 0.925
29 H 0.003 0.997
30 H 0.054 0.946
31 H 0.070 0.930
32 H 0.101 0.899
33 H 0.040 0.960
34 H 0.214 0.786
35 H 0.057 0.943
36 H 0.096 0.904
37 H 0.046 0.954
38 H 0.092 0.908
39 H 0.091 0.909
40 H 0.081 0.919
41 H 0.080 0.920
42 H 0.074 0.926
43 H 0.091 0.909
44 H 0.082 0.918
45 H 0.094 0.906
46 H 0.046 0.954
Dipole moment (debyes) X Y Z Total
from point charges 9.102 -9.418 15.172 20.044
hybrid contribution 1.526 0.689 -1.517 2.259
sum 10.628 -8.730 13.656 19.381
Atomic orbital electron populations
1.21713 0.95491 0.99823 1.02862 1.22012 0.96178 0.91058 0.98505
1.62071 1.14359 1.13911 1.34295 1.19797 0.96334 0.94273 0.83100
1.21174 1.46105 0.90671 0.95960 0.91914 1.24995 0.95611 0.98902
0.95248 1.69959 1.48162 1.35155 1.00832 0.86525 0.77621 0.85393
0.78035 1.20899 1.21339 1.19712 1.22648 0.90988 1.01781 0.94330
1.21866 0.88254 0.94832 0.89038 0.89450 1.86553 1.61676 1.20960
1.64640 1.22898 0.98657 1.00676 0.88414 1.61807 1.32351 1.10614
1.20215 1.22099 0.89721 1.00270 0.95164 1.21577 1.01765 0.95942
0.96123 1.21575 0.97631 0.96116 1.00527 1.21575 0.98191 0.99953
0.95697 1.22114 1.00799 0.87603 0.96806 0.93843 0.91943 0.92452
0.96514 0.92482 0.99662 0.94616 0.93027 0.89883 0.96036 0.78571
0.94291 0.90438 0.95439 0.90813 0.90927 0.91871 0.92011 0.92577
0.90859 0.91829 0.90609 0.95418
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.55 9.86 37.16 0.37 -2.18 16
2 C 0.05 0.96 5.55 -3.82 -0.02 0.94 16
3 N -0.52 -11.28 4.25 -236.07 -1.00 -12.28 16
4 C 0.19 4.96 4.59 -4.98 -0.02 4.94 16
5 C -0.50 -14.02 8.60 -34.44 -0.30 -14.31 16
6 H 0.06 1.73 7.68 -52.49 -0.40 1.33 16
7 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16
8 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16
9 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16
10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16
13 C 0.03 0.60 4.45 -3.82 -0.02 0.58 16
14 C 0.12 1.87 2.94 -26.73 -0.08 1.79 16
15 H 0.09 1.39 4.84 -51.93 -0.25 1.13 16
16 O -0.53 -9.18 13.12 -35.23 -0.46 -9.64 16
17 C 0.02 0.29 4.64 -3.83 -0.02 0.27 16
18 N -0.53 -6.43 4.51 -234.68 -1.06 -7.49 16
19 C 0.06 0.58 5.43 -3.83 -0.02 0.56 16
20 C -0.12 -1.06 6.09 -26.65 -0.16 -1.22 16
21 C -0.12 -1.04 6.00 -26.61 -0.16 -1.20 16
22 C -0.12 -1.12 6.09 -26.65 -0.16 -1.28 16
23 C 0.05 0.61 5.29 -3.84 -0.02 0.59 16
24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16
25 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16
26 H 0.06 1.13 6.72 -51.93 -0.35 0.78 16
27 H 0.02 0.32 8.06 -51.93 -0.42 -0.10 16
28 H 0.06 0.97 5.95 -51.92 -0.31 0.66 16
29 H -0.01 -0.40 8.00 -51.93 -0.42 -0.82 16
30 H 0.04 1.00 6.31 -51.93 -0.33 0.67 16
31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16
32 H 0.08 1.65 7.34 -51.93 -0.38 1.27 16
33 H 0.02 0.40 8.12 -51.93 -0.42 -0.03 16
34 H 0.37 5.58 9.04 45.56 0.41 5.99 16
35 H 0.04 0.49 8.01 -51.93 -0.42 0.08 16
36 H 0.08 0.97 7.81 -51.92 -0.41 0.57 16
37 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16
38 H 0.07 0.75 7.94 -51.93 -0.41 0.34 16
39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16
43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
45 H 0.08 0.90 6.61 -51.93 -0.34 0.56 16
46 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16
LS Contribution 353.20 15.07 5.32 5.32
Total: -1.00 -30.55 353.20 -10.00 -40.55
By element:
Atomic # 1 Polarization: 9.96 SS G_CDS: -7.80 Total: 2.16 kcal
Atomic # 6 Polarization: -8.40 SS G_CDS: -0.71 Total: -9.11 kcal
Atomic # 7 Polarization: -44.61 SS G_CDS: -1.33 Total: -45.93 kcal
Atomic # 8 Polarization: -9.18 SS G_CDS: -0.46 Total: -9.64 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal
Total LS contribution 5.32 Total: 5.32 kcal
Total: -30.55 -10.00 -40.55 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000383847208.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.513 kcal
(2) G-P(sol) polarization free energy of solvation -30.551 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.064 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.064 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds