Wall clock time and date at job start Mon Mar 30 2020 04:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47043 * 2 1 4 4 C 1.46896 * 110.99783 * 288.52069 * 3 2 1 5 5 C 1.50704 * 109.46812 * 160.37674 * 4 3 2 6 6 H 1.07998 * 119.99935 * 3.60257 * 5 4 3 7 7 C 1.37883 * 119.99964 * 183.59810 * 5 4 3 8 8 N 1.31515 * 119.99964 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 119.99929 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46930 * 90.00222 * 9 7 5 11 11 H 1.48506 * 109.47149 * 209.99953 * 9 7 5 12 12 H 1.48502 * 109.47535 * 330.00230 * 9 7 5 13 13 C 1.46906 * 110.99733 * 164.57472 * 3 2 1 14 14 C 1.53001 * 109.46962 * 293.94737 * 13 3 2 15 15 H 1.09004 * 109.47015 * 60.00759 * 14 13 3 16 16 O 1.42898 * 109.47464 * 300.00581 * 14 13 3 17 17 C 1.52999 * 109.47290 * 180.02562 * 14 13 3 18 18 N 1.46894 * 109.47401 * 182.94803 * 17 14 13 19 19 C 1.46854 * 110.99941 * 198.93657 * 18 17 14 20 20 C 1.53038 * 109.52190 * 174.16084 * 19 18 17 21 21 C 1.53120 * 109.27957 * 59.17693 * 20 19 18 22 22 C 1.53119 * 109.15953 * 302.34496 * 21 20 19 23 23 C 1.46839 * 111.00086 * 74.72245 * 18 17 14 24 24 H 1.09000 * 109.47190 * 186.23309 * 1 2 3 25 25 H 1.08993 * 109.47129 * 306.23698 * 1 2 3 26 26 H 1.08997 * 109.46584 * 66.23797 * 1 2 3 27 27 H 1.08994 * 109.47325 * 239.99683 * 2 1 3 28 28 H 1.09010 * 109.47014 * 119.99714 * 2 1 3 29 29 H 1.08993 * 109.47906 * 280.37939 * 4 3 2 30 30 H 1.09000 * 109.46771 * 40.38465 * 4 3 2 31 31 H 0.96997 * 119.99927 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47065 * 173.95584 * 13 3 2 33 33 H 1.08995 * 109.47665 * 53.94963 * 13 3 2 34 34 H 0.96704 * 113.99636 * 299.99569 * 16 14 13 35 35 H 1.09001 * 109.47407 * 302.95246 * 17 14 13 36 36 H 1.09007 * 109.46883 * 62.94943 * 17 14 13 37 37 H 1.08997 * 109.45987 * 294.16856 * 19 18 17 38 38 H 1.08995 * 109.46239 * 54.14459 * 19 18 17 39 39 H 1.09006 * 109.50367 * 299.23578 * 20 19 18 40 40 H 1.08999 * 109.50293 * 179.11849 * 20 19 18 41 41 H 1.09001 * 109.52209 * 182.44448 * 21 20 19 42 42 H 1.08994 * 109.57610 * 62.28011 * 21 20 19 43 43 H 1.09002 * 109.50309 * 297.70938 * 22 21 20 44 44 H 1.09005 * 109.50408 * 177.59926 * 22 21 20 45 45 H 1.08997 * 109.46549 * 305.85764 * 23 18 17 46 46 H 1.09001 * 109.46555 * 65.82566 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7844 2.0265 -1.3004 5 6 1.8375 3.5239 -1.1387 6 1 2.0844 3.9550 -0.1798 7 6 1.5708 4.3434 -2.2150 8 7 1.2697 3.8183 -3.3826 9 14 1.6373 6.1993 -2.0148 10 1 3.0119 6.6797 -2.3066 11 1 0.6808 6.8335 -2.9573 12 1 1.2722 6.5604 -0.6214 13 6 3.4416 1.4406 0.3648 14 6 3.6131 0.9940 1.8181 15 1 3.2491 -0.0274 1.9297 16 8 2.8673 1.8616 2.6743 17 6 5.0939 1.0525 2.1983 18 7 5.2672 0.5570 3.5702 19 6 6.5501 0.9995 4.1315 20 6 6.6325 0.5903 5.6038 21 6 6.5038 -0.9316 5.7136 22 6 5.1817 -1.3712 5.0786 23 6 5.1412 -0.9051 3.6215 24 1 -0.3633 -1.0216 0.1116 25 1 -0.3633 0.6074 0.8288 26 1 -0.3632 0.4141 -0.9405 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 2.5523 1.7098 -2.0061 30 1 0.8033 1.7362 -1.6764 31 1 1.0818 4.3948 -4.1397 32 1 3.8056 2.4620 0.2533 33 1 4.0105 0.7788 -0.2882 34 1 3.1380 2.7888 2.6269 35 1 5.6701 0.4316 1.5122 36 1 5.4443 2.0829 2.1372 37 1 7.3674 0.5355 3.5794 38 1 6.6270 2.0837 4.0510 39 1 5.8236 1.0649 6.1593 40 1 7.5913 0.9051 6.0159 41 1 6.5185 -1.2236 6.7636 42 1 7.3343 -1.4069 5.1917 43 1 4.3499 -0.9275 5.6259 44 1 5.1038 -2.4578 5.1155 45 1 4.1950 -1.2042 3.1707 46 1 5.9651 -1.3602 3.0718 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383847208.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:33 Heat of formation + Delta-G solvation = -56.063994 kcal Electronic energy + Delta-G solvation = -21882.511037 eV Core-core repulsion = 18806.471945 eV Total energy + Delta-G solvation = -3076.039092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.28516 -37.63187 -35.59861 -33.37243 -32.58002 -30.97979 -30.48723 -29.06274 -26.80114 -24.89328 -23.29779 -22.79335 -22.55385 -20.93087 -19.84658 -19.55430 -16.59012 -16.26732 -15.73741 -15.43576 -15.07492 -14.63599 -14.45709 -14.37191 -14.12655 -13.79994 -13.44583 -13.24857 -13.15026 -12.83987 -12.33692 -12.18241 -11.62953 -11.51188 -11.34383 -11.30679 -11.22287 -10.92571 -10.85413 -10.78182 -10.71737 -10.54674 -10.51927 -10.31935 -10.09295 -9.75500 -9.26208 -9.13047 -8.38629 -8.24239 -7.14098 -5.98911 -3.99644 3.33030 3.39755 3.44532 3.77271 4.44956 4.64433 4.67901 4.74530 4.86670 4.96178 5.13018 5.20462 5.28852 5.36507 5.37031 5.39531 5.47824 5.57676 5.64049 5.70283 5.73700 5.77409 5.81210 5.83468 5.88873 5.98585 6.01395 6.06439 6.16712 6.23627 6.35229 6.39436 6.61136 6.67071 6.91297 7.05864 7.09624 7.29225 7.37847 7.86257 8.16000 8.25260 8.34526 8.60765 9.08162 9.64143 11.11739 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.023393 B = 0.004195 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.673541 B = 6672.456442 C = 7484.352216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 N -0.522 5.522 4 C 0.190 3.810 5 C -0.500 4.500 6 H 0.063 0.937 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.896 3.104 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.272 1.272 13 C 0.032 3.968 14 C 0.121 3.879 15 H 0.088 0.912 16 O -0.535 6.535 17 C 0.022 3.978 18 N -0.525 5.525 19 C 0.055 3.945 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.116 4.116 23 C 0.055 3.945 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.017 0.983 28 H 0.057 0.943 29 H -0.014 1.014 30 H 0.036 0.964 31 H 0.260 0.740 32 H 0.083 0.917 33 H 0.022 0.978 34 H 0.368 0.632 35 H 0.039 0.961 36 H 0.077 0.923 37 H 0.027 0.973 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.099 -9.369 14.570 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 N -0.246 5.246 4 C 0.065 3.935 5 C -0.539 4.539 6 H 0.081 0.919 7 C -0.148 4.148 8 N -0.541 5.541 9 Si 0.724 3.276 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.097 4.097 14 C 0.060 3.940 15 H 0.106 0.894 16 O -0.338 6.338 17 C -0.106 4.106 18 N -0.250 5.250 19 C -0.073 4.073 20 C -0.154 4.154 21 C -0.158 4.158 22 C -0.154 4.154 23 C -0.073 4.073 24 H 0.062 0.938 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.035 0.965 28 H 0.075 0.925 29 H 0.003 0.997 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.040 0.960 34 H 0.214 0.786 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 9.102 -9.418 15.172 20.044 hybrid contribution 1.526 0.689 -1.517 2.259 sum 10.628 -8.730 13.656 19.381 Atomic orbital electron populations 1.21713 0.95491 0.99823 1.02862 1.22012 0.96178 0.91058 0.98505 1.62071 1.14359 1.13911 1.34295 1.19797 0.96334 0.94273 0.83100 1.21174 1.46105 0.90671 0.95960 0.91914 1.24995 0.95611 0.98902 0.95248 1.69959 1.48162 1.35155 1.00832 0.86525 0.77621 0.85393 0.78035 1.20899 1.21339 1.19712 1.22648 0.90988 1.01781 0.94330 1.21866 0.88254 0.94832 0.89038 0.89450 1.86553 1.61676 1.20960 1.64640 1.22898 0.98657 1.00676 0.88414 1.61807 1.32351 1.10614 1.20215 1.22099 0.89721 1.00270 0.95164 1.21577 1.01765 0.95942 0.96123 1.21575 0.97631 0.96116 1.00527 1.21575 0.98191 0.99953 0.95697 1.22114 1.00799 0.87603 0.96806 0.93843 0.91943 0.92452 0.96514 0.92482 0.99662 0.94616 0.93027 0.89883 0.96036 0.78571 0.94291 0.90438 0.95439 0.90813 0.90927 0.91871 0.92011 0.92577 0.90859 0.91829 0.90609 0.95418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.86 37.16 0.37 -2.18 16 2 C 0.05 0.96 5.55 -3.82 -0.02 0.94 16 3 N -0.52 -11.28 4.25 -236.07 -1.00 -12.28 16 4 C 0.19 4.96 4.59 -4.98 -0.02 4.94 16 5 C -0.50 -14.02 8.60 -34.44 -0.30 -14.31 16 6 H 0.06 1.73 7.68 -52.49 -0.40 1.33 16 7 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.03 0.60 4.45 -3.82 -0.02 0.58 16 14 C 0.12 1.87 2.94 -26.73 -0.08 1.79 16 15 H 0.09 1.39 4.84 -51.93 -0.25 1.13 16 16 O -0.53 -9.18 13.12 -35.23 -0.46 -9.64 16 17 C 0.02 0.29 4.64 -3.83 -0.02 0.27 16 18 N -0.53 -6.43 4.51 -234.68 -1.06 -7.49 16 19 C 0.06 0.58 5.43 -3.83 -0.02 0.56 16 20 C -0.12 -1.06 6.09 -26.65 -0.16 -1.22 16 21 C -0.12 -1.04 6.00 -26.61 -0.16 -1.20 16 22 C -0.12 -1.12 6.09 -26.65 -0.16 -1.28 16 23 C 0.05 0.61 5.29 -3.84 -0.02 0.59 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.06 1.13 6.72 -51.93 -0.35 0.78 16 27 H 0.02 0.32 8.06 -51.93 -0.42 -0.10 16 28 H 0.06 0.97 5.95 -51.92 -0.31 0.66 16 29 H -0.01 -0.40 8.00 -51.93 -0.42 -0.82 16 30 H 0.04 1.00 6.31 -51.93 -0.33 0.67 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.08 1.65 7.34 -51.93 -0.38 1.27 16 33 H 0.02 0.40 8.12 -51.93 -0.42 -0.03 16 34 H 0.37 5.58 9.04 45.56 0.41 5.99 16 35 H 0.04 0.49 8.01 -51.93 -0.42 0.08 16 36 H 0.08 0.97 7.81 -51.92 -0.41 0.57 16 37 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.75 7.94 -51.93 -0.41 0.34 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.90 6.61 -51.93 -0.34 0.56 16 46 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -30.55 353.20 -10.00 -40.55 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.80 Total: 2.16 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -0.71 Total: -9.11 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: -1.33 Total: -45.93 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -0.46 Total: -9.64 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.55 -10.00 -40.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383847208.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.513 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds