Wall clock time and date at job start Mon Mar 30 2020 04:41:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46899 * 109.47043 * 2 1
4 4 C 1.46896 * 110.99783 * 288.52069 * 3 2 1
5 5 C 1.50704 * 109.46812 * 160.37674 * 4 3 2
6 6 H 1.07998 * 119.99935 * 3.60257 * 5 4 3
7 7 C 1.37883 * 119.99964 * 183.59810 * 5 4 3
8 8 N 1.31515 * 119.99964 * 0.02562 * 7 5 4
9 9 Si 1.86792 * 119.99929 * 180.02562 * 7 5 4
10 10 H 1.48505 * 109.46930 * 90.00222 * 9 7 5
11 11 H 1.48506 * 109.47149 * 209.99953 * 9 7 5
12 12 H 1.48502 * 109.47535 * 330.00230 * 9 7 5
13 13 C 1.46906 * 110.99733 * 164.57472 * 3 2 1
14 14 C 1.53001 * 109.46962 * 293.94737 * 13 3 2
15 15 H 1.09004 * 109.47015 * 60.00759 * 14 13 3
16 16 O 1.42898 * 109.47464 * 300.00581 * 14 13 3
17 17 C 1.52999 * 109.47290 * 180.02562 * 14 13 3
18 18 N 1.46894 * 109.47401 * 182.94803 * 17 14 13
19 19 C 1.46854 * 110.99941 * 198.93657 * 18 17 14
20 20 C 1.53038 * 109.52190 * 174.16084 * 19 18 17
21 21 C 1.53120 * 109.27957 * 59.17693 * 20 19 18
22 22 C 1.53119 * 109.15953 * 302.34496 * 21 20 19
23 23 C 1.46839 * 111.00086 * 74.72245 * 18 17 14
24 24 H 1.09000 * 109.47190 * 186.23309 * 1 2 3
25 25 H 1.08993 * 109.47129 * 306.23698 * 1 2 3
26 26 H 1.08997 * 109.46584 * 66.23797 * 1 2 3
27 27 H 1.08994 * 109.47325 * 239.99683 * 2 1 3
28 28 H 1.09010 * 109.47014 * 119.99714 * 2 1 3
29 29 H 1.08993 * 109.47906 * 280.37939 * 4 3 2
30 30 H 1.09000 * 109.46771 * 40.38465 * 4 3 2
31 31 H 0.96997 * 119.99927 * 179.97438 * 8 7 5
32 32 H 1.09004 * 109.47065 * 173.95584 * 13 3 2
33 33 H 1.08995 * 109.47665 * 53.94963 * 13 3 2
34 34 H 0.96704 * 113.99636 * 299.99569 * 16 14 13
35 35 H 1.09001 * 109.47407 * 302.95246 * 17 14 13
36 36 H 1.09007 * 109.46883 * 62.94943 * 17 14 13
37 37 H 1.08997 * 109.45987 * 294.16856 * 19 18 17
38 38 H 1.08995 * 109.46239 * 54.14459 * 19 18 17
39 39 H 1.09006 * 109.50367 * 299.23578 * 20 19 18
40 40 H 1.08999 * 109.50293 * 179.11849 * 20 19 18
41 41 H 1.09001 * 109.52209 * 182.44448 * 21 20 19
42 42 H 1.08994 * 109.57610 * 62.28011 * 21 20 19
43 43 H 1.09002 * 109.50309 * 297.70938 * 22 21 20
44 44 H 1.09005 * 109.50408 * 177.59926 * 22 21 20
45 45 H 1.08997 * 109.46549 * 305.85764 * 23 18 17
46 46 H 1.09001 * 109.46555 * 65.82566 * 23 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.7844 2.0265 -1.3004
5 6 1.8375 3.5239 -1.1387
6 1 2.0844 3.9550 -0.1798
7 6 1.5708 4.3434 -2.2150
8 7 1.2697 3.8183 -3.3826
9 14 1.6373 6.1993 -2.0148
10 1 3.0119 6.6797 -2.3066
11 1 0.6808 6.8335 -2.9573
12 1 1.2722 6.5604 -0.6214
13 6 3.4416 1.4406 0.3648
14 6 3.6131 0.9940 1.8181
15 1 3.2491 -0.0274 1.9297
16 8 2.8673 1.8616 2.6743
17 6 5.0939 1.0525 2.1983
18 7 5.2672 0.5570 3.5702
19 6 6.5501 0.9995 4.1315
20 6 6.6325 0.5903 5.6038
21 6 6.5038 -0.9316 5.7136
22 6 5.1817 -1.3712 5.0786
23 6 5.1412 -0.9051 3.6215
24 1 -0.3633 -1.0216 0.1116
25 1 -0.3633 0.6074 0.8288
26 1 -0.3632 0.4141 -0.9405
27 1 1.8934 -0.5138 -0.8899
28 1 1.8934 -0.5138 0.8901
29 1 2.5523 1.7098 -2.0061
30 1 0.8033 1.7362 -1.6764
31 1 1.0818 4.3948 -4.1397
32 1 3.8056 2.4620 0.2533
33 1 4.0105 0.7788 -0.2882
34 1 3.1380 2.7888 2.6269
35 1 5.6701 0.4316 1.5122
36 1 5.4443 2.0829 2.1372
37 1 7.3674 0.5355 3.5794
38 1 6.6270 2.0837 4.0510
39 1 5.8236 1.0649 6.1593
40 1 7.5913 0.9051 6.0159
41 1 6.5185 -1.2236 6.7636
42 1 7.3343 -1.4069 5.1917
43 1 4.3499 -0.9275 5.6259
44 1 5.1038 -2.4578 5.1155
45 1 4.1950 -1.2042 3.1707
46 1 5.9651 -1.3602 3.0718
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000383847208.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:41:33
Heat of formation + Delta-G solvation = -78.271860 kcal
Electronic energy + Delta-G solvation = -21883.474042 eV
Core-core repulsion = 18806.471945 eV
Total energy + Delta-G solvation = -3077.002097 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-40.29182 -39.01482 -37.06326 -34.70881 -34.30903 -31.98926 -31.74259 -30.65092
-28.48173 -26.27158 -24.45167 -24.22841 -23.75060 -22.21456 -21.25893 -20.56136
-18.56572 -17.60574 -17.00385 -16.72797 -16.48004 -16.01004 -15.82119 -15.52025
-15.28751 -15.04830 -14.90204 -14.41689 -14.24711 -14.08553 -13.86408 -13.33952
-13.18447 -12.97753 -12.90673 -12.69353 -12.56322 -12.49244 -12.28448 -12.10944
-12.08753 -11.89422 -11.60713 -11.48297 -11.33163 -11.26526 -11.07548 -10.67707
-10.50728 -9.18320 -8.92181 -8.16926 -6.26566 1.41753 1.43728 1.55414
2.42160 2.78044 3.14746 3.33803 3.74444 3.84975 3.90743 4.00831
4.05378 4.15717 4.29558 4.31118 4.35917 4.40283 4.48299 4.53669
4.63962 4.66142 4.68854 4.71076 4.80962 4.89116 4.93486 4.94523
5.04502 5.06525 5.10219 5.20193 5.25191 5.26334 5.31407 5.32284
5.40246 5.50452 5.69902 6.11611 6.11801 6.22154 6.44008 6.66949
6.89170 7.07052 7.42794 8.93642
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.023393 B = 0.004195 C = 0.003740
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1196.673541 B = 6672.456442 C = 7484.352216
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.048 3.952
3 N -0.530 5.530
4 C 0.206 3.794
5 C -0.515 4.515
6 H 0.063 0.937
7 C 0.000 4.000
8 N -0.938 5.938
9 Si 0.968 3.032
10 H -0.272 1.272
11 H -0.285 1.285
12 H -0.264 1.264
13 C 0.034 3.966
14 C 0.136 3.864
15 H 0.088 0.912
16 O -0.550 6.550
17 C 0.031 3.969
18 N -0.537 5.537
19 C 0.053 3.947
20 C -0.114 4.114
21 C -0.119 4.119
22 C -0.114 4.114
23 C 0.052 3.948
24 H 0.078 0.922
25 H 0.053 0.947
26 H 0.031 0.969
27 H 0.014 0.986
28 H 0.082 0.918
29 H -0.044 1.044
30 H 0.009 0.991
31 H 0.263 0.737
32 H 0.067 0.933
33 H 0.023 0.977
34 H 0.376 0.624
35 H 0.044 0.956
36 H 0.081 0.919
37 H 0.031 0.969
38 H 0.074 0.926
39 H 0.062 0.938
40 H 0.080 0.920
41 H 0.074 0.926
42 H 0.061 0.939
43 H 0.060 0.940
44 H 0.077 0.923
45 H 0.065 0.935
46 H 0.032 0.968
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.183 -9.437 16.326 21.924
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.080 4.080
3 N -0.255 5.255
4 C 0.080 3.920
5 C -0.553 4.553
6 H 0.081 0.919
7 C -0.198 4.198
8 N -0.579 5.579
9 Si 0.793 3.207
10 H -0.198 1.198
11 H -0.210 1.210
12 H -0.188 1.188
13 C -0.095 4.095
14 C 0.075 3.925
15 H 0.106 0.894
16 O -0.355 6.355
17 C -0.098 4.098
18 N -0.262 5.262
19 C -0.074 4.074
20 C -0.152 4.152
21 C -0.156 4.156
22 C -0.152 4.152
23 C -0.076 4.076
24 H 0.097 0.903
25 H 0.072 0.928
26 H 0.050 0.950
27 H 0.033 0.967
28 H 0.100 0.900
29 H -0.026 1.026
30 H 0.027 0.973
31 H 0.072 0.928
32 H 0.085 0.915
33 H 0.042 0.958
34 H 0.223 0.777
35 H 0.062 0.938
36 H 0.100 0.900
37 H 0.050 0.950
38 H 0.092 0.908
39 H 0.081 0.919
40 H 0.098 0.902
41 H 0.093 0.907
42 H 0.080 0.920
43 H 0.079 0.921
44 H 0.096 0.904
45 H 0.084 0.916
46 H 0.050 0.950
Dipole moment (debyes) X Y Z Total
from point charges 10.200 -9.498 16.954 21.948
hybrid contribution 1.189 0.643 -2.052 2.457
sum 11.389 -8.856 14.902 20.741
Atomic orbital electron populations
1.21671 0.94893 1.01698 1.01032 1.22134 0.96734 0.89590 0.99519
1.62021 1.16487 1.15651 1.31304 1.19439 0.93855 0.94111 0.84641
1.21473 1.46033 0.91762 0.96065 0.91855 1.25909 0.95007 1.04086
0.94787 1.70092 1.49001 1.37066 1.01707 0.85398 0.77994 0.79067
0.78250 1.19792 1.21040 1.18844 1.22685 0.89140 1.01062 0.96597
1.21705 0.90000 0.94248 0.86525 0.89425 1.86520 1.62450 1.21746
1.64779 1.22703 0.96516 1.01211 0.89334 1.61783 1.33675 1.11330
1.19404 1.22168 0.88863 1.00372 0.96007 1.21573 1.02304 0.96315
0.94965 1.21574 0.97072 0.95676 1.01299 1.21565 0.98419 1.00746
0.94448 1.22167 1.00415 0.87067 0.97960 0.90274 0.92769 0.95007
0.96750 0.89966 1.02641 0.97252 0.92841 0.91488 0.95837 0.77722
0.93802 0.90043 0.95044 0.90772 0.91947 0.90167 0.90735 0.92013
0.92100 0.90425 0.91626 0.94957
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.83 9.86 71.98 0.71 -4.12 16
2 C 0.05 1.80 5.55 86.30 0.48 2.27 16
3 N -0.53 -23.22 4.25 -900.78 -3.83 -27.05 16
4 C 0.21 11.13 4.59 85.56 0.39 11.53 16
5 C -0.51 -29.37 8.60 25.60 0.22 -29.15 16
6 H 0.06 3.53 7.68 -2.91 -0.02 3.50 16
7 C 0.00 -0.03 5.46 84.66 0.46 0.44 16
8 N -0.94 -57.09 13.29 21.45 0.28 -56.81 16
9 Si 0.97 44.57 29.54 68.60 2.03 46.59 16
10 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16
11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16
12 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16
13 C 0.03 1.28 4.45 86.30 0.38 1.67 16
14 C 0.14 4.09 2.94 30.59 0.09 4.18 16
15 H 0.09 2.66 4.84 -2.39 -0.01 2.65 16
16 O -0.55 -18.40 13.12 -148.98 -1.95 -20.35 16
17 C 0.03 0.77 4.64 86.30 0.40 1.17 16
18 N -0.54 -12.32 4.51 -896.38 -4.04 -16.36 16
19 C 0.05 1.02 5.43 86.32 0.47 1.49 16
20 C -0.11 -1.82 6.09 30.65 0.19 -1.63 16
21 C -0.12 -1.74 6.00 30.67 0.18 -1.56 16
22 C -0.11 -1.97 6.09 30.65 0.19 -1.79 16
23 C 0.05 1.08 5.29 86.33 0.46 1.53 16
24 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16
25 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16
26 H 0.03 1.27 6.72 -2.39 -0.02 1.25 16
27 H 0.01 0.54 8.06 -2.39 -0.02 0.52 16
28 H 0.08 2.66 5.95 -2.38 -0.01 2.65 16
29 H -0.04 -2.59 8.00 -2.39 -0.02 -2.60 16
30 H 0.01 0.55 6.31 -2.39 -0.02 0.54 16
31 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16
32 H 0.07 2.69 7.34 -2.38 -0.02 2.68 16
33 H 0.02 0.87 8.12 -2.39 -0.02 0.85 16
34 H 0.38 11.15 9.04 -74.05 -0.67 10.48 16
35 H 0.04 1.05 8.01 -2.39 -0.02 1.03 16
36 H 0.08 1.94 7.81 -2.38 -0.02 1.93 16
37 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16
38 H 0.07 1.39 7.94 -2.39 -0.02 1.37 16
39 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16
40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16
41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16
42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16
43 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
44 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16
45 H 0.07 1.48 6.61 -2.39 -0.02 1.46 16
46 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16
Total: -1.00 -65.78 353.20 -2.63 -68.41
By element:
Atomic # 1 Polarization: 19.29 SS G_CDS: 0.26 Total: 19.55 kcal
Atomic # 6 Polarization: -18.61 SS G_CDS: 4.62 Total: -13.98 kcal
Atomic # 7 Polarization: -92.63 SS G_CDS: -7.59 Total: -100.21 kcal
Atomic # 8 Polarization: -18.40 SS G_CDS: -1.95 Total: -20.35 kcal
Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal
Total: -65.78 -2.63 -68.41 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000383847208.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -9.860 kcal
(2) G-P(sol) polarization free energy of solvation -65.779 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.639 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.633 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.412 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.272 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds