Wall clock time and date at job start Mon Mar 30 2020 04:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.47043 * 2 1 4 4 C 1.46896 * 110.99783 * 288.52069 * 3 2 1 5 5 C 1.50704 * 109.46812 * 160.37674 * 4 3 2 6 6 H 1.07998 * 119.99935 * 3.60257 * 5 4 3 7 7 C 1.37883 * 119.99964 * 183.59810 * 5 4 3 8 8 N 1.31515 * 119.99964 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 119.99929 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46930 * 90.00222 * 9 7 5 11 11 H 1.48506 * 109.47149 * 209.99953 * 9 7 5 12 12 H 1.48502 * 109.47535 * 330.00230 * 9 7 5 13 13 C 1.46906 * 110.99733 * 164.57472 * 3 2 1 14 14 C 1.53001 * 109.46962 * 293.94737 * 13 3 2 15 15 H 1.09004 * 109.47015 * 60.00759 * 14 13 3 16 16 O 1.42898 * 109.47464 * 300.00581 * 14 13 3 17 17 C 1.52999 * 109.47290 * 180.02562 * 14 13 3 18 18 N 1.46894 * 109.47401 * 182.94803 * 17 14 13 19 19 C 1.46854 * 110.99941 * 198.93657 * 18 17 14 20 20 C 1.53038 * 109.52190 * 174.16084 * 19 18 17 21 21 C 1.53120 * 109.27957 * 59.17693 * 20 19 18 22 22 C 1.53119 * 109.15953 * 302.34496 * 21 20 19 23 23 C 1.46839 * 111.00086 * 74.72245 * 18 17 14 24 24 H 1.09000 * 109.47190 * 186.23309 * 1 2 3 25 25 H 1.08993 * 109.47129 * 306.23698 * 1 2 3 26 26 H 1.08997 * 109.46584 * 66.23797 * 1 2 3 27 27 H 1.08994 * 109.47325 * 239.99683 * 2 1 3 28 28 H 1.09010 * 109.47014 * 119.99714 * 2 1 3 29 29 H 1.08993 * 109.47906 * 280.37939 * 4 3 2 30 30 H 1.09000 * 109.46771 * 40.38465 * 4 3 2 31 31 H 0.96997 * 119.99927 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47065 * 173.95584 * 13 3 2 33 33 H 1.08995 * 109.47665 * 53.94963 * 13 3 2 34 34 H 0.96704 * 113.99636 * 299.99569 * 16 14 13 35 35 H 1.09001 * 109.47407 * 302.95246 * 17 14 13 36 36 H 1.09007 * 109.46883 * 62.94943 * 17 14 13 37 37 H 1.08997 * 109.45987 * 294.16856 * 19 18 17 38 38 H 1.08995 * 109.46239 * 54.14459 * 19 18 17 39 39 H 1.09006 * 109.50367 * 299.23578 * 20 19 18 40 40 H 1.08999 * 109.50293 * 179.11849 * 20 19 18 41 41 H 1.09001 * 109.52209 * 182.44448 * 21 20 19 42 42 H 1.08994 * 109.57610 * 62.28011 * 21 20 19 43 43 H 1.09002 * 109.50309 * 297.70938 * 22 21 20 44 44 H 1.09005 * 109.50408 * 177.59926 * 22 21 20 45 45 H 1.08997 * 109.46549 * 305.85764 * 23 18 17 46 46 H 1.09001 * 109.46555 * 65.82566 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7844 2.0265 -1.3004 5 6 1.8375 3.5239 -1.1387 6 1 2.0844 3.9550 -0.1798 7 6 1.5708 4.3434 -2.2150 8 7 1.2697 3.8183 -3.3826 9 14 1.6373 6.1993 -2.0148 10 1 3.0119 6.6797 -2.3066 11 1 0.6808 6.8335 -2.9573 12 1 1.2722 6.5604 -0.6214 13 6 3.4416 1.4406 0.3648 14 6 3.6131 0.9940 1.8181 15 1 3.2491 -0.0274 1.9297 16 8 2.8673 1.8616 2.6743 17 6 5.0939 1.0525 2.1983 18 7 5.2672 0.5570 3.5702 19 6 6.5501 0.9995 4.1315 20 6 6.6325 0.5903 5.6038 21 6 6.5038 -0.9316 5.7136 22 6 5.1817 -1.3712 5.0786 23 6 5.1412 -0.9051 3.6215 24 1 -0.3633 -1.0216 0.1116 25 1 -0.3633 0.6074 0.8288 26 1 -0.3632 0.4141 -0.9405 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 2.5523 1.7098 -2.0061 30 1 0.8033 1.7362 -1.6764 31 1 1.0818 4.3948 -4.1397 32 1 3.8056 2.4620 0.2533 33 1 4.0105 0.7788 -0.2882 34 1 3.1380 2.7888 2.6269 35 1 5.6701 0.4316 1.5122 36 1 5.4443 2.0829 2.1372 37 1 7.3674 0.5355 3.5794 38 1 6.6270 2.0837 4.0510 39 1 5.8236 1.0649 6.1593 40 1 7.5913 0.9051 6.0159 41 1 6.5185 -1.2236 6.7636 42 1 7.3343 -1.4069 5.1917 43 1 4.3499 -0.9275 5.6259 44 1 5.1038 -2.4578 5.1155 45 1 4.1950 -1.2042 3.1707 46 1 5.9651 -1.3602 3.0718 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383847208.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:33 Heat of formation + Delta-G solvation = -78.271860 kcal Electronic energy + Delta-G solvation = -21883.474042 eV Core-core repulsion = 18806.471945 eV Total energy + Delta-G solvation = -3077.002097 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.29182 -39.01482 -37.06326 -34.70881 -34.30903 -31.98926 -31.74259 -30.65092 -28.48173 -26.27158 -24.45167 -24.22841 -23.75060 -22.21456 -21.25893 -20.56136 -18.56572 -17.60574 -17.00385 -16.72797 -16.48004 -16.01004 -15.82119 -15.52025 -15.28751 -15.04830 -14.90204 -14.41689 -14.24711 -14.08553 -13.86408 -13.33952 -13.18447 -12.97753 -12.90673 -12.69353 -12.56322 -12.49244 -12.28448 -12.10944 -12.08753 -11.89422 -11.60713 -11.48297 -11.33163 -11.26526 -11.07548 -10.67707 -10.50728 -9.18320 -8.92181 -8.16926 -6.26566 1.41753 1.43728 1.55414 2.42160 2.78044 3.14746 3.33803 3.74444 3.84975 3.90743 4.00831 4.05378 4.15717 4.29558 4.31118 4.35917 4.40283 4.48299 4.53669 4.63962 4.66142 4.68854 4.71076 4.80962 4.89116 4.93486 4.94523 5.04502 5.06525 5.10219 5.20193 5.25191 5.26334 5.31407 5.32284 5.40246 5.50452 5.69902 6.11611 6.11801 6.22154 6.44008 6.66949 6.89170 7.07052 7.42794 8.93642 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.023393 B = 0.004195 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.673541 B = 6672.456442 C = 7484.352216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.048 3.952 3 N -0.530 5.530 4 C 0.206 3.794 5 C -0.515 4.515 6 H 0.063 0.937 7 C 0.000 4.000 8 N -0.938 5.938 9 Si 0.968 3.032 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.264 1.264 13 C 0.034 3.966 14 C 0.136 3.864 15 H 0.088 0.912 16 O -0.550 6.550 17 C 0.031 3.969 18 N -0.537 5.537 19 C 0.053 3.947 20 C -0.114 4.114 21 C -0.119 4.119 22 C -0.114 4.114 23 C 0.052 3.948 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.031 0.969 27 H 0.014 0.986 28 H 0.082 0.918 29 H -0.044 1.044 30 H 0.009 0.991 31 H 0.263 0.737 32 H 0.067 0.933 33 H 0.023 0.977 34 H 0.376 0.624 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.183 -9.437 16.326 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.080 4.080 3 N -0.255 5.255 4 C 0.080 3.920 5 C -0.553 4.553 6 H 0.081 0.919 7 C -0.198 4.198 8 N -0.579 5.579 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.188 1.188 13 C -0.095 4.095 14 C 0.075 3.925 15 H 0.106 0.894 16 O -0.355 6.355 17 C -0.098 4.098 18 N -0.262 5.262 19 C -0.074 4.074 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.152 4.152 23 C -0.076 4.076 24 H 0.097 0.903 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.033 0.967 28 H 0.100 0.900 29 H -0.026 1.026 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.223 0.777 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 10.200 -9.498 16.954 21.948 hybrid contribution 1.189 0.643 -2.052 2.457 sum 11.389 -8.856 14.902 20.741 Atomic orbital electron populations 1.21671 0.94893 1.01698 1.01032 1.22134 0.96734 0.89590 0.99519 1.62021 1.16487 1.15651 1.31304 1.19439 0.93855 0.94111 0.84641 1.21473 1.46033 0.91762 0.96065 0.91855 1.25909 0.95007 1.04086 0.94787 1.70092 1.49001 1.37066 1.01707 0.85398 0.77994 0.79067 0.78250 1.19792 1.21040 1.18844 1.22685 0.89140 1.01062 0.96597 1.21705 0.90000 0.94248 0.86525 0.89425 1.86520 1.62450 1.21746 1.64779 1.22703 0.96516 1.01211 0.89334 1.61783 1.33675 1.11330 1.19404 1.22168 0.88863 1.00372 0.96007 1.21573 1.02304 0.96315 0.94965 1.21574 0.97072 0.95676 1.01299 1.21565 0.98419 1.00746 0.94448 1.22167 1.00415 0.87067 0.97960 0.90274 0.92769 0.95007 0.96750 0.89966 1.02641 0.97252 0.92841 0.91488 0.95837 0.77722 0.93802 0.90043 0.95044 0.90772 0.91947 0.90167 0.90735 0.92013 0.92100 0.90425 0.91626 0.94957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.86 71.98 0.71 -4.12 16 2 C 0.05 1.80 5.55 86.30 0.48 2.27 16 3 N -0.53 -23.22 4.25 -900.78 -3.83 -27.05 16 4 C 0.21 11.13 4.59 85.56 0.39 11.53 16 5 C -0.51 -29.37 8.60 25.60 0.22 -29.15 16 6 H 0.06 3.53 7.68 -2.91 -0.02 3.50 16 7 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 8 N -0.94 -57.09 13.29 21.45 0.28 -56.81 16 9 Si 0.97 44.57 29.54 68.60 2.03 46.59 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 13 C 0.03 1.28 4.45 86.30 0.38 1.67 16 14 C 0.14 4.09 2.94 30.59 0.09 4.18 16 15 H 0.09 2.66 4.84 -2.39 -0.01 2.65 16 16 O -0.55 -18.40 13.12 -148.98 -1.95 -20.35 16 17 C 0.03 0.77 4.64 86.30 0.40 1.17 16 18 N -0.54 -12.32 4.51 -896.38 -4.04 -16.36 16 19 C 0.05 1.02 5.43 86.32 0.47 1.49 16 20 C -0.11 -1.82 6.09 30.65 0.19 -1.63 16 21 C -0.12 -1.74 6.00 30.67 0.18 -1.56 16 22 C -0.11 -1.97 6.09 30.65 0.19 -1.79 16 23 C 0.05 1.08 5.29 86.33 0.46 1.53 16 24 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.03 1.27 6.72 -2.39 -0.02 1.25 16 27 H 0.01 0.54 8.06 -2.39 -0.02 0.52 16 28 H 0.08 2.66 5.95 -2.38 -0.01 2.65 16 29 H -0.04 -2.59 8.00 -2.39 -0.02 -2.60 16 30 H 0.01 0.55 6.31 -2.39 -0.02 0.54 16 31 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.07 2.69 7.34 -2.38 -0.02 2.68 16 33 H 0.02 0.87 8.12 -2.39 -0.02 0.85 16 34 H 0.38 11.15 9.04 -74.05 -0.67 10.48 16 35 H 0.04 1.05 8.01 -2.39 -0.02 1.03 16 36 H 0.08 1.94 7.81 -2.38 -0.02 1.93 16 37 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.07 1.39 7.94 -2.39 -0.02 1.37 16 39 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.07 1.48 6.61 -2.39 -0.02 1.46 16 46 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -65.78 353.20 -2.63 -68.41 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.26 Total: 19.55 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 4.62 Total: -13.98 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -7.59 Total: -100.21 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -1.95 Total: -20.35 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -65.78 -2.63 -68.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383847208.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.860 kcal (2) G-P(sol) polarization free energy of solvation -65.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds