Wall clock time and date at job start Mon Mar 30 2020 05:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 113.99989 * 2 1 4 4 H 1.09006 * 109.52306 * 29.87068 * 3 2 1 5 5 C 1.53114 * 109.57805 * 269.71545 * 3 2 1 6 6 C 1.53035 * 109.27745 * 297.72101 * 5 3 2 7 7 N 1.46847 * 109.52093 * 300.81513 * 6 5 3 8 8 C 1.46899 * 111.00388 * 185.84277 * 7 6 5 9 9 C 1.52999 * 109.47092 * 51.60928 * 8 7 6 10 10 C 1.53006 * 109.47218 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47252 * 180.02562 * 10 9 8 12 12 C 1.50693 * 109.47088 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00049 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99985 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99783 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00125 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47197 * 60.00245 * 16 14 12 18 18 H 1.48502 * 109.46794 * 300.00179 * 16 14 12 19 19 H 1.48496 * 109.47123 * 180.02562 * 16 14 12 20 20 C 1.46847 * 111.19780 * 61.74629 * 7 6 5 21 21 H 1.08992 * 109.46389 * 58.26767 * 20 7 6 22 22 C 1.53001 * 109.46479 * 178.24488 * 20 7 6 23 23 N 1.46898 * 109.47216 * 183.37219 * 22 20 7 24 24 C 1.53041 * 109.52128 * 298.25721 * 20 7 6 25 25 H 1.09006 * 109.47299 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47447 * 300.00074 * 1 2 3 27 27 H 1.09002 * 109.47446 * 59.99787 * 1 2 3 28 28 H 1.09004 * 109.50295 * 57.65556 * 5 3 2 29 29 H 1.08996 * 109.50809 * 177.73525 * 5 3 2 30 30 H 1.09003 * 109.46203 * 180.80760 * 6 5 3 31 31 H 1.08997 * 109.46689 * 60.83457 * 6 5 3 32 32 H 1.09004 * 109.47067 * 291.61689 * 8 7 6 33 33 H 1.09001 * 109.47497 * 171.61297 * 8 7 6 34 34 H 1.09001 * 109.47237 * 60.00247 * 9 8 7 35 35 H 1.09001 * 109.47251 * 300.00519 * 9 8 7 36 36 H 1.08991 * 109.47409 * 59.99786 * 10 9 8 37 37 H 1.09002 * 109.46202 * 299.99732 * 10 9 8 38 38 H 1.09003 * 109.47232 * 59.98984 * 11 10 9 39 39 H 1.09001 * 109.46780 * 299.99561 * 11 10 9 40 40 H 0.96994 * 120.00133 * 359.97438 * 15 14 12 41 41 H 1.09003 * 109.46742 * 303.37304 * 22 20 7 42 42 H 1.08999 * 109.47416 * 63.37040 * 22 20 7 43 43 H 1.00897 * 110.99715 * 65.43302 * 23 22 20 44 44 H 1.00899 * 110.99987 * 189.38902 * 23 22 20 45 45 H 1.08998 * 109.50534 * 179.12165 * 24 20 7 46 46 H 1.09008 * 109.50519 * 299.19828 * 24 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3444 2.0006 0.5117 5 6 2.2254 1.7713 -1.4426 6 6 3.2081 0.8260 -2.1374 7 7 4.4836 0.8228 -1.4098 8 6 5.4958 0.0342 -2.1250 9 6 5.5742 0.5036 -3.5791 10 6 6.6280 -0.3182 -4.3242 11 6 6.7068 0.1516 -5.7782 12 6 7.7451 -0.6573 -6.5119 13 1 8.2943 -1.4291 -5.9929 14 6 7.9941 -0.4123 -7.8457 15 7 7.3258 0.5279 -8.4774 16 14 9.2807 -1.4155 -8.7553 17 1 8.9055 -2.8518 -8.7186 18 1 10.6027 -1.2324 -8.1040 19 1 9.3573 -0.9594 -10.1665 20 6 4.3099 0.3341 -0.0360 21 1 3.8913 -0.6720 -0.0586 22 6 5.6668 0.3058 0.6705 23 7 5.5061 -0.2586 2.0171 24 6 3.3600 1.2646 0.7216 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.2737 1.7615 -1.9740 29 1 2.6313 2.7828 -1.4417 30 1 3.3746 1.1632 -3.1605 31 1 2.7947 -0.1824 -2.1503 32 1 5.2207 -1.0202 -2.0980 33 1 6.4660 0.1690 -1.6469 34 1 5.8492 1.5580 -3.6062 35 1 4.6039 0.3688 -4.0572 36 1 6.3526 -1.3724 -4.2971 37 1 7.5983 -0.1836 -3.8462 38 1 6.9823 1.2059 -5.8050 39 1 5.7365 0.0174 -6.2564 40 1 6.6575 1.0485 -8.0052 41 1 6.3612 -0.3100 0.0988 42 1 6.0583 1.3202 0.7461 43 1 5.2288 -1.2277 1.9722 44 1 6.3505 -0.1488 2.5584 45 1 3.2190 0.8930 1.7365 46 1 3.7848 2.2679 0.7572 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385197367.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:58 Heat of formation + Delta-G solvation = -67.521674 kcal Electronic energy + Delta-G solvation = -21575.924488 eV Core-core repulsion = 18499.388554 eV Total energy + Delta-G solvation = -3076.535934 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.95052 -37.54241 -35.33227 -34.35080 -33.09054 -31.46965 -30.48621 -28.06571 -26.73850 -25.23296 -24.82053 -23.33235 -21.50757 -20.93003 -20.07302 -19.64496 -16.74134 -16.61648 -16.18944 -15.82962 -15.62628 -15.36434 -14.97619 -14.60220 -14.07128 -13.90288 -13.69487 -13.16690 -13.09294 -12.87907 -12.60039 -12.30318 -12.16327 -12.03091 -11.92059 -11.30772 -11.20123 -11.03115 -10.87081 -10.71839 -10.60042 -10.43618 -10.30863 -10.09002 -9.74900 -9.63637 -9.49587 -8.83273 -8.46525 -8.27925 -8.16922 -6.31470 -3.99788 3.45831 3.48214 3.60463 3.66909 3.85517 4.51567 4.58627 4.63596 4.70074 4.82542 5.00173 5.09360 5.13759 5.20233 5.30893 5.38305 5.43159 5.44884 5.45927 5.51461 5.57816 5.66202 5.75268 5.86775 5.88930 5.92034 5.98081 6.05332 6.11944 6.24727 6.26820 6.45154 6.72597 6.84679 6.87585 7.02042 7.05159 7.15418 7.26445 7.28415 7.48418 7.62174 8.28675 8.51823 8.94182 9.72613 11.09291 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.025432 B = 0.003362 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.697511 B = 8326.698875 C = 9026.074966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.084 3.916 4 H 0.058 0.942 5 C -0.138 4.138 6 C 0.057 3.943 7 N -0.535 5.535 8 C 0.055 3.945 9 C -0.119 4.119 10 C -0.102 4.102 11 C 0.009 3.991 12 C -0.602 4.602 13 H 0.047 0.953 14 C 0.013 3.987 15 N -0.915 5.915 16 Si 1.069 2.931 17 H -0.288 1.288 18 H -0.288 1.288 19 H -0.282 1.282 20 C 0.094 3.906 21 H 0.045 0.955 22 C 0.062 3.938 23 N -0.849 5.849 24 C -0.095 4.095 25 H 0.082 0.918 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.037 0.963 32 H 0.028 0.972 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.006 0.994 39 H 0.005 0.995 40 H 0.268 0.732 41 H 0.033 0.967 42 H 0.078 0.922 43 H 0.339 0.661 44 H 0.342 0.658 45 H 0.082 0.918 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.246 0.929 21.274 24.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.026 3.974 4 H 0.076 0.924 5 C -0.176 4.176 6 C -0.071 4.071 7 N -0.260 5.260 8 C -0.072 4.072 9 C -0.157 4.157 10 C -0.140 4.140 11 C -0.028 4.028 12 C -0.640 4.640 13 H 0.065 0.935 14 C -0.191 4.191 15 N -0.551 5.551 16 Si 0.897 3.103 17 H -0.215 1.215 18 H -0.215 1.215 19 H -0.208 1.208 20 C -0.015 4.015 21 H 0.063 0.937 22 C -0.069 4.069 23 N -0.378 5.378 24 C -0.132 4.132 25 H 0.101 0.899 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.025 0.975 39 H 0.023 0.977 40 H 0.079 0.921 41 H 0.051 0.949 42 H 0.097 0.903 43 H 0.151 0.849 44 H 0.154 0.846 45 H 0.100 0.900 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.811 1.596 19.911 22.713 hybrid contribution -0.508 -1.082 1.126 1.642 sum -11.319 0.514 21.037 23.895 Atomic orbital electron populations 1.22747 0.81654 1.02468 0.99666 1.87940 1.19096 1.28014 1.95019 1.22278 0.95107 0.84330 0.95698 0.92364 1.22083 0.99148 1.00394 0.95960 1.22032 0.88617 0.98416 0.97988 1.61991 1.08381 1.54127 1.01521 1.22240 0.95214 0.94560 0.95166 1.21790 1.00129 1.00848 0.92935 1.21462 0.96599 0.98140 0.97787 1.19210 0.96563 0.96188 0.90873 1.22095 1.23085 1.21125 0.97690 0.93469 1.25859 1.00247 0.97640 0.95330 1.70774 1.23864 1.20759 1.39731 0.83554 0.75292 0.75309 0.76151 1.21501 1.21481 1.20773 1.21417 0.94647 0.97190 0.88205 0.93736 1.21898 0.96014 1.00384 0.88602 1.58590 1.40086 1.23714 1.15435 1.21607 0.92187 1.00426 0.99025 0.89944 0.94307 0.94230 0.91700 0.90228 0.89843 0.94436 0.95405 0.90783 0.91713 0.92422 0.93568 0.93343 0.97537 0.97696 0.92122 0.94868 0.90343 0.84918 0.84591 0.89981 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.82 101.05 1.09 1.36 16 2 O -0.38 -4.41 9.22 -35.23 -0.32 -4.74 16 3 C 0.08 0.88 2.93 -26.61 -0.08 0.80 16 4 H 0.06 0.52 7.79 -51.93 -0.40 0.12 16 5 C -0.14 -1.52 5.79 -26.65 -0.15 -1.67 16 6 C 0.06 0.76 4.89 -3.83 -0.02 0.74 16 7 N -0.53 -7.26 4.60 -226.69 -1.04 -8.30 16 8 C 0.06 0.83 4.44 -3.82 -0.02 0.82 16 9 C -0.12 -2.11 4.71 -26.73 -0.13 -2.23 16 10 C -0.10 -2.18 5.15 -26.73 -0.14 -2.31 16 11 C 0.01 0.23 4.28 -27.89 -0.12 0.11 16 12 C -0.60 -17.78 9.11 -34.44 -0.31 -18.10 16 13 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 14 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 15 N -0.91 -28.82 13.65 55.43 0.76 -28.06 16 16 Si 1.07 25.92 29.90 -169.99 -5.08 20.83 16 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 C 0.09 1.14 1.99 -67.72 -0.13 1.00 16 21 H 0.04 0.62 7.76 -51.93 -0.40 0.21 16 22 C 0.06 0.67 5.86 -3.82 -0.02 0.65 16 23 N -0.85 -7.53 8.98 -10.37 -0.09 -7.62 16 24 C -0.09 -1.03 4.96 -26.65 -0.13 -1.16 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 27 H 0.04 0.31 7.86 -51.93 -0.41 -0.10 16 28 H 0.06 0.65 7.86 -51.93 -0.41 0.24 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.18 5.84 -51.93 -0.30 0.88 16 31 H 0.04 0.54 7.76 -51.93 -0.40 0.14 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 1.08 6.40 -51.93 -0.33 0.75 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.02 6.19 -51.93 -0.32 0.70 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 39 H 0.00 0.13 8.01 -51.93 -0.42 -0.28 16 40 H 0.27 8.43 7.22 -40.82 -0.29 8.13 16 41 H 0.03 0.38 6.22 -51.93 -0.32 0.06 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.34 2.81 9.07 -39.29 -0.36 2.45 16 44 H 0.34 2.46 9.08 -39.29 -0.36 2.10 16 45 H 0.08 0.90 7.73 -51.93 -0.40 0.50 16 46 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 LS Contribution 351.84 15.07 5.30 5.30 Total: -1.00 -32.06 351.84 -9.29 -41.36 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -8.55 Total: 0.94 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -0.26 Total: -19.71 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: -0.38 Total: -43.99 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.32 Total: -4.74 kcal Atomic # 14 Polarization: 25.92 SS G_CDS: -5.08 Total: 20.83 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.06 -9.29 -41.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385197367.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.164 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds