Wall clock time and date at job start Mon Mar 30 2020 05:13:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42892 * 1
3 3 C 1.42901 * 113.99989 * 2 1
4 4 H 1.09006 * 109.52306 * 29.87068 * 3 2 1
5 5 C 1.53114 * 109.57805 * 269.71545 * 3 2 1
6 6 C 1.53035 * 109.27745 * 297.72101 * 5 3 2
7 7 N 1.46847 * 109.52093 * 300.81513 * 6 5 3
8 8 C 1.46899 * 111.00388 * 185.84277 * 7 6 5
9 9 C 1.52999 * 109.47092 * 51.60928 * 8 7 6
10 10 C 1.53006 * 109.47218 * 180.02562 * 9 8 7
11 11 C 1.53001 * 109.47252 * 180.02562 * 10 9 8
12 12 C 1.50693 * 109.47088 * 179.97438 * 11 10 9
13 13 H 1.08004 * 120.00049 * 359.97438 * 12 11 10
14 14 C 1.37879 * 119.99985 * 179.97438 * 12 11 10
15 15 N 1.31514 * 119.99783 * 0.02562 * 14 12 11
16 16 Si 1.86799 * 120.00125 * 180.02562 * 14 12 11
17 17 H 1.48498 * 109.47197 * 60.00245 * 16 14 12
18 18 H 1.48502 * 109.46794 * 300.00179 * 16 14 12
19 19 H 1.48496 * 109.47123 * 180.02562 * 16 14 12
20 20 C 1.46847 * 111.19780 * 61.74629 * 7 6 5
21 21 H 1.08992 * 109.46389 * 58.26767 * 20 7 6
22 22 C 1.53001 * 109.46479 * 178.24488 * 20 7 6
23 23 N 1.46898 * 109.47216 * 183.37219 * 22 20 7
24 24 C 1.53041 * 109.52128 * 298.25721 * 20 7 6
25 25 H 1.09006 * 109.47299 * 180.02562 * 1 2 3
26 26 H 1.09002 * 109.47447 * 300.00074 * 1 2 3
27 27 H 1.09002 * 109.47446 * 59.99787 * 1 2 3
28 28 H 1.09004 * 109.50295 * 57.65556 * 5 3 2
29 29 H 1.08996 * 109.50809 * 177.73525 * 5 3 2
30 30 H 1.09003 * 109.46203 * 180.80760 * 6 5 3
31 31 H 1.08997 * 109.46689 * 60.83457 * 6 5 3
32 32 H 1.09004 * 109.47067 * 291.61689 * 8 7 6
33 33 H 1.09001 * 109.47497 * 171.61297 * 8 7 6
34 34 H 1.09001 * 109.47237 * 60.00247 * 9 8 7
35 35 H 1.09001 * 109.47251 * 300.00519 * 9 8 7
36 36 H 1.08991 * 109.47409 * 59.99786 * 10 9 8
37 37 H 1.09002 * 109.46202 * 299.99732 * 10 9 8
38 38 H 1.09003 * 109.47232 * 59.98984 * 11 10 9
39 39 H 1.09001 * 109.46780 * 299.99561 * 11 10 9
40 40 H 0.96994 * 120.00133 * 359.97438 * 15 14 12
41 41 H 1.09003 * 109.46742 * 303.37304 * 22 20 7
42 42 H 1.08999 * 109.47416 * 63.37040 * 22 20 7
43 43 H 1.00897 * 110.99715 * 65.43302 * 23 22 20
44 44 H 1.00899 * 110.99987 * 189.38902 * 23 22 20
45 45 H 1.08998 * 109.50534 * 179.12165 * 24 20 7
46 46 H 1.09008 * 109.50519 * 299.19828 * 24 20 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 1 1.3444 2.0006 0.5117
5 6 2.2254 1.7713 -1.4426
6 6 3.2081 0.8260 -2.1374
7 7 4.4836 0.8228 -1.4098
8 6 5.4958 0.0342 -2.1250
9 6 5.5742 0.5036 -3.5791
10 6 6.6280 -0.3182 -4.3242
11 6 6.7068 0.1516 -5.7782
12 6 7.7451 -0.6573 -6.5119
13 1 8.2943 -1.4291 -5.9929
14 6 7.9941 -0.4123 -7.8457
15 7 7.3258 0.5279 -8.4774
16 14 9.2807 -1.4155 -8.7553
17 1 8.9055 -2.8518 -8.7186
18 1 10.6027 -1.2324 -8.1040
19 1 9.3573 -0.9594 -10.1665
20 6 4.3099 0.3341 -0.0360
21 1 3.8913 -0.6720 -0.0586
22 6 5.6668 0.3058 0.6705
23 7 5.5061 -0.2586 2.0171
24 6 3.3600 1.2646 0.7216
25 1 -0.3634 -1.0277 0.0005
26 1 -0.3634 0.5138 0.8900
27 1 -0.3634 0.5139 -0.8900
28 1 1.2737 1.7615 -1.9740
29 1 2.6313 2.7828 -1.4417
30 1 3.3746 1.1632 -3.1605
31 1 2.7947 -0.1824 -2.1503
32 1 5.2207 -1.0202 -2.0980
33 1 6.4660 0.1690 -1.6469
34 1 5.8492 1.5580 -3.6062
35 1 4.6039 0.3688 -4.0572
36 1 6.3526 -1.3724 -4.2971
37 1 7.5983 -0.1836 -3.8462
38 1 6.9823 1.2059 -5.8050
39 1 5.7365 0.0174 -6.2564
40 1 6.6575 1.0485 -8.0052
41 1 6.3612 -0.3100 0.0988
42 1 6.0583 1.3202 0.7461
43 1 5.2288 -1.2277 1.9722
44 1 6.3505 -0.1488 2.5584
45 1 3.2190 0.8930 1.7365
46 1 3.7848 2.2679 0.7572
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385197367.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:13:58
Heat of formation + Delta-G solvation = -67.521674 kcal
Electronic energy + Delta-G solvation = -21575.924488 eV
Core-core repulsion = 18499.388554 eV
Total energy + Delta-G solvation = -3076.535934 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-39.95052 -37.54241 -35.33227 -34.35080 -33.09054 -31.46965 -30.48621 -28.06571
-26.73850 -25.23296 -24.82053 -23.33235 -21.50757 -20.93003 -20.07302 -19.64496
-16.74134 -16.61648 -16.18944 -15.82962 -15.62628 -15.36434 -14.97619 -14.60220
-14.07128 -13.90288 -13.69487 -13.16690 -13.09294 -12.87907 -12.60039 -12.30318
-12.16327 -12.03091 -11.92059 -11.30772 -11.20123 -11.03115 -10.87081 -10.71839
-10.60042 -10.43618 -10.30863 -10.09002 -9.74900 -9.63637 -9.49587 -8.83273
-8.46525 -8.27925 -8.16922 -6.31470 -3.99788 3.45831 3.48214 3.60463
3.66909 3.85517 4.51567 4.58627 4.63596 4.70074 4.82542 5.00173
5.09360 5.13759 5.20233 5.30893 5.38305 5.43159 5.44884 5.45927
5.51461 5.57816 5.66202 5.75268 5.86775 5.88930 5.92034 5.98081
6.05332 6.11944 6.24727 6.26820 6.45154 6.72597 6.84679 6.87585
7.02042 7.05159 7.15418 7.26445 7.28415 7.48418 7.62174 8.28675
8.51823 8.94182 9.72613 11.09291
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.025432 B = 0.003362 C = 0.003101
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1100.697511 B = 8326.698875 C = 9026.074966
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.382 6.382
3 C 0.084 3.916
4 H 0.058 0.942
5 C -0.138 4.138
6 C 0.057 3.943
7 N -0.535 5.535
8 C 0.055 3.945
9 C -0.119 4.119
10 C -0.102 4.102
11 C 0.009 3.991
12 C -0.602 4.602
13 H 0.047 0.953
14 C 0.013 3.987
15 N -0.915 5.915
16 Si 1.069 2.931
17 H -0.288 1.288
18 H -0.288 1.288
19 H -0.282 1.282
20 C 0.094 3.906
21 H 0.045 0.955
22 C 0.062 3.938
23 N -0.849 5.849
24 C -0.095 4.095
25 H 0.082 0.918
26 H 0.038 0.962
27 H 0.039 0.961
28 H 0.064 0.936
29 H 0.079 0.921
30 H 0.083 0.917
31 H 0.037 0.963
32 H 0.028 0.972
33 H 0.074 0.926
34 H 0.064 0.936
35 H 0.057 0.943
36 H 0.046 0.954
37 H 0.048 0.952
38 H 0.006 0.994
39 H 0.005 0.995
40 H 0.268 0.732
41 H 0.033 0.967
42 H 0.078 0.922
43 H 0.339 0.661
44 H 0.342 0.658
45 H 0.082 0.918
46 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.246 0.929 21.274 24.081
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.301 6.301
3 C 0.026 3.974
4 H 0.076 0.924
5 C -0.176 4.176
6 C -0.071 4.071
7 N -0.260 5.260
8 C -0.072 4.072
9 C -0.157 4.157
10 C -0.140 4.140
11 C -0.028 4.028
12 C -0.640 4.640
13 H 0.065 0.935
14 C -0.191 4.191
15 N -0.551 5.551
16 Si 0.897 3.103
17 H -0.215 1.215
18 H -0.215 1.215
19 H -0.208 1.208
20 C -0.015 4.015
21 H 0.063 0.937
22 C -0.069 4.069
23 N -0.378 5.378
24 C -0.132 4.132
25 H 0.101 0.899
26 H 0.057 0.943
27 H 0.058 0.942
28 H 0.083 0.917
29 H 0.098 0.902
30 H 0.102 0.898
31 H 0.056 0.944
32 H 0.046 0.954
33 H 0.092 0.908
34 H 0.083 0.917
35 H 0.076 0.924
36 H 0.064 0.936
37 H 0.067 0.933
38 H 0.025 0.975
39 H 0.023 0.977
40 H 0.079 0.921
41 H 0.051 0.949
42 H 0.097 0.903
43 H 0.151 0.849
44 H 0.154 0.846
45 H 0.100 0.900
46 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -10.811 1.596 19.911 22.713
hybrid contribution -0.508 -1.082 1.126 1.642
sum -11.319 0.514 21.037 23.895
Atomic orbital electron populations
1.22747 0.81654 1.02468 0.99666 1.87940 1.19096 1.28014 1.95019
1.22278 0.95107 0.84330 0.95698 0.92364 1.22083 0.99148 1.00394
0.95960 1.22032 0.88617 0.98416 0.97988 1.61991 1.08381 1.54127
1.01521 1.22240 0.95214 0.94560 0.95166 1.21790 1.00129 1.00848
0.92935 1.21462 0.96599 0.98140 0.97787 1.19210 0.96563 0.96188
0.90873 1.22095 1.23085 1.21125 0.97690 0.93469 1.25859 1.00247
0.97640 0.95330 1.70774 1.23864 1.20759 1.39731 0.83554 0.75292
0.75309 0.76151 1.21501 1.21481 1.20773 1.21417 0.94647 0.97190
0.88205 0.93736 1.21898 0.96014 1.00384 0.88602 1.58590 1.40086
1.23714 1.15435 1.21607 0.92187 1.00426 0.99025 0.89944 0.94307
0.94230 0.91700 0.90228 0.89843 0.94436 0.95405 0.90783 0.91713
0.92422 0.93568 0.93343 0.97537 0.97696 0.92122 0.94868 0.90343
0.84918 0.84591 0.89981 0.90388
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.26 10.82 101.05 1.09 1.36 16
2 O -0.38 -4.41 9.22 -35.23 -0.32 -4.74 16
3 C 0.08 0.88 2.93 -26.61 -0.08 0.80 16
4 H 0.06 0.52 7.79 -51.93 -0.40 0.12 16
5 C -0.14 -1.52 5.79 -26.65 -0.15 -1.67 16
6 C 0.06 0.76 4.89 -3.83 -0.02 0.74 16
7 N -0.53 -7.26 4.60 -226.69 -1.04 -8.30 16
8 C 0.06 0.83 4.44 -3.82 -0.02 0.82 16
9 C -0.12 -2.11 4.71 -26.73 -0.13 -2.23 16
10 C -0.10 -2.18 5.15 -26.73 -0.14 -2.31 16
11 C 0.01 0.23 4.28 -27.89 -0.12 0.11 16
12 C -0.60 -17.78 9.11 -34.44 -0.31 -18.10 16
13 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16
14 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16
15 N -0.91 -28.82 13.65 55.43 0.76 -28.06 16
16 Si 1.07 25.92 29.90 -169.99 -5.08 20.83 16
17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16
19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
20 C 0.09 1.14 1.99 -67.72 -0.13 1.00 16
21 H 0.04 0.62 7.76 -51.93 -0.40 0.21 16
22 C 0.06 0.67 5.86 -3.82 -0.02 0.65 16
23 N -0.85 -7.53 8.98 -10.37 -0.09 -7.62 16
24 C -0.09 -1.03 4.96 -26.65 -0.13 -1.16 16
25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
26 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16
27 H 0.04 0.31 7.86 -51.93 -0.41 -0.10 16
28 H 0.06 0.65 7.86 -51.93 -0.41 0.24 16
29 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16
30 H 0.08 1.18 5.84 -51.93 -0.30 0.88 16
31 H 0.04 0.54 7.76 -51.93 -0.40 0.14 16
32 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16
33 H 0.07 1.08 6.40 -51.93 -0.33 0.75 16
34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
35 H 0.06 1.02 6.19 -51.93 -0.32 0.70 16
36 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16
37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16
38 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16
39 H 0.00 0.13 8.01 -51.93 -0.42 -0.28 16
40 H 0.27 8.43 7.22 -40.82 -0.29 8.13 16
41 H 0.03 0.38 6.22 -51.93 -0.32 0.06 16
42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16
43 H 0.34 2.81 9.07 -39.29 -0.36 2.45 16
44 H 0.34 2.46 9.08 -39.29 -0.36 2.10 16
45 H 0.08 0.90 7.73 -51.93 -0.40 0.50 16
46 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16
LS Contribution 351.84 15.07 5.30 5.30
Total: -1.00 -32.06 351.84 -9.29 -41.36
By element:
Atomic # 1 Polarization: 9.50 SS G_CDS: -8.55 Total: 0.94 kcal
Atomic # 6 Polarization: -19.46 SS G_CDS: -0.26 Total: -19.71 kcal
Atomic # 7 Polarization: -43.61 SS G_CDS: -0.38 Total: -43.99 kcal
Atomic # 8 Polarization: -4.41 SS G_CDS: -0.32 Total: -4.74 kcal
Atomic # 14 Polarization: 25.92 SS G_CDS: -5.08 Total: 20.83 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -32.06 -9.29 -41.36 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385197367.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.164 kcal
(2) G-P(sol) polarization free energy of solvation -32.063 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.227 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.522 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds