Wall clock time and date at job start Mon Mar 30 2020 05:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42901 * 113.99989 * 2 1 4 4 H 1.09006 * 109.52306 * 29.87068 * 3 2 1 5 5 C 1.53114 * 109.57805 * 269.71545 * 3 2 1 6 6 C 1.53035 * 109.27745 * 297.72101 * 5 3 2 7 7 N 1.46847 * 109.52093 * 300.81513 * 6 5 3 8 8 C 1.46899 * 111.00388 * 185.84277 * 7 6 5 9 9 C 1.52999 * 109.47092 * 51.60928 * 8 7 6 10 10 C 1.53006 * 109.47218 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47252 * 180.02562 * 10 9 8 12 12 C 1.50693 * 109.47088 * 179.97438 * 11 10 9 13 13 H 1.08004 * 120.00049 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99985 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99783 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00125 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47197 * 60.00245 * 16 14 12 18 18 H 1.48502 * 109.46794 * 300.00179 * 16 14 12 19 19 H 1.48496 * 109.47123 * 180.02562 * 16 14 12 20 20 C 1.46847 * 111.19780 * 61.74629 * 7 6 5 21 21 H 1.08992 * 109.46389 * 58.26767 * 20 7 6 22 22 C 1.53001 * 109.46479 * 178.24488 * 20 7 6 23 23 N 1.46898 * 109.47216 * 183.37219 * 22 20 7 24 24 C 1.53041 * 109.52128 * 298.25721 * 20 7 6 25 25 H 1.09006 * 109.47299 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47447 * 300.00074 * 1 2 3 27 27 H 1.09002 * 109.47446 * 59.99787 * 1 2 3 28 28 H 1.09004 * 109.50295 * 57.65556 * 5 3 2 29 29 H 1.08996 * 109.50809 * 177.73525 * 5 3 2 30 30 H 1.09003 * 109.46203 * 180.80760 * 6 5 3 31 31 H 1.08997 * 109.46689 * 60.83457 * 6 5 3 32 32 H 1.09004 * 109.47067 * 291.61689 * 8 7 6 33 33 H 1.09001 * 109.47497 * 171.61297 * 8 7 6 34 34 H 1.09001 * 109.47237 * 60.00247 * 9 8 7 35 35 H 1.09001 * 109.47251 * 300.00519 * 9 8 7 36 36 H 1.08991 * 109.47409 * 59.99786 * 10 9 8 37 37 H 1.09002 * 109.46202 * 299.99732 * 10 9 8 38 38 H 1.09003 * 109.47232 * 59.98984 * 11 10 9 39 39 H 1.09001 * 109.46780 * 299.99561 * 11 10 9 40 40 H 0.96994 * 120.00133 * 359.97438 * 15 14 12 41 41 H 1.09003 * 109.46742 * 303.37304 * 22 20 7 42 42 H 1.08999 * 109.47416 * 63.37040 * 22 20 7 43 43 H 1.00897 * 110.99715 * 65.43302 * 23 22 20 44 44 H 1.00899 * 110.99987 * 189.38902 * 23 22 20 45 45 H 1.08998 * 109.50534 * 179.12165 * 24 20 7 46 46 H 1.09008 * 109.50519 * 299.19828 * 24 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3444 2.0006 0.5117 5 6 2.2254 1.7713 -1.4426 6 6 3.2081 0.8260 -2.1374 7 7 4.4836 0.8228 -1.4098 8 6 5.4958 0.0342 -2.1250 9 6 5.5742 0.5036 -3.5791 10 6 6.6280 -0.3182 -4.3242 11 6 6.7068 0.1516 -5.7782 12 6 7.7451 -0.6573 -6.5119 13 1 8.2943 -1.4291 -5.9929 14 6 7.9941 -0.4123 -7.8457 15 7 7.3258 0.5279 -8.4774 16 14 9.2807 -1.4155 -8.7553 17 1 8.9055 -2.8518 -8.7186 18 1 10.6027 -1.2324 -8.1040 19 1 9.3573 -0.9594 -10.1665 20 6 4.3099 0.3341 -0.0360 21 1 3.8913 -0.6720 -0.0586 22 6 5.6668 0.3058 0.6705 23 7 5.5061 -0.2586 2.0171 24 6 3.3600 1.2646 0.7216 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.2737 1.7615 -1.9740 29 1 2.6313 2.7828 -1.4417 30 1 3.3746 1.1632 -3.1605 31 1 2.7947 -0.1824 -2.1503 32 1 5.2207 -1.0202 -2.0980 33 1 6.4660 0.1690 -1.6469 34 1 5.8492 1.5580 -3.6062 35 1 4.6039 0.3688 -4.0572 36 1 6.3526 -1.3724 -4.2971 37 1 7.5983 -0.1836 -3.8462 38 1 6.9823 1.2059 -5.8050 39 1 5.7365 0.0174 -6.2564 40 1 6.6575 1.0485 -8.0052 41 1 6.3612 -0.3100 0.0988 42 1 6.0583 1.3202 0.7461 43 1 5.2288 -1.2277 1.9722 44 1 6.3505 -0.1488 2.5584 45 1 3.2190 0.8930 1.7365 46 1 3.7848 2.2679 0.7572 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385197367.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:57 Heat of formation + Delta-G solvation = -90.361556 kcal Electronic energy + Delta-G solvation = -21576.914899 eV Core-core repulsion = 18499.388554 eV Total energy + Delta-G solvation = -3077.526346 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.90928 -38.48739 -36.86802 -35.57692 -34.64247 -32.94715 -31.39371 -29.70114 -27.52142 -26.47281 -26.00620 -24.92901 -23.06263 -21.97424 -21.61406 -20.59895 -18.87940 -17.60551 -17.10287 -16.68845 -16.64655 -16.26293 -16.09632 -15.83209 -15.63723 -15.30475 -14.86053 -14.71206 -14.43031 -14.09765 -13.85400 -13.59139 -13.29092 -13.05961 -12.92145 -12.76855 -12.66013 -12.37004 -12.16982 -12.04509 -11.97362 -11.85830 -11.83868 -11.53527 -11.31558 -11.19281 -10.64095 -10.55958 -10.41997 -9.60223 -9.28608 -8.71150 -6.41528 1.50877 1.59971 1.79514 2.55704 2.73984 2.94336 3.13884 3.65423 3.74023 3.85799 3.88640 3.99168 4.07721 4.18379 4.28992 4.38417 4.40763 4.48104 4.49543 4.51340 4.55227 4.63825 4.68596 4.72089 4.81114 4.85471 4.89548 4.93281 5.01385 5.02639 5.06899 5.13161 5.15890 5.20615 5.34953 5.44288 5.53795 5.98958 6.03953 6.12508 6.16885 6.23930 6.31939 6.56019 6.58089 7.41212 8.69669 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.025432 B = 0.003362 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.697511 B = 8326.698875 C = 9026.074966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.084 3.916 4 H 0.079 0.921 5 C -0.134 4.134 6 C 0.057 3.943 7 N -0.535 5.535 8 C 0.066 3.934 9 C -0.107 4.107 10 C -0.090 4.090 11 C 0.009 3.991 12 C -0.623 4.623 13 H 0.050 0.950 14 C -0.042 4.042 15 N -0.938 5.938 16 Si 1.119 2.881 17 H -0.268 1.268 18 H -0.267 1.267 19 H -0.282 1.282 20 C 0.097 3.903 21 H 0.027 0.973 22 C 0.068 3.932 23 N -0.846 5.846 24 C -0.089 4.089 25 H 0.088 0.912 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.046 0.954 37 H 0.052 0.948 38 H -0.012 1.012 39 H -0.015 1.015 40 H 0.255 0.745 41 H 0.025 0.975 42 H 0.077 0.923 43 H 0.343 0.657 44 H 0.353 0.647 45 H 0.084 0.916 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.110 0.567 22.714 25.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C 0.026 3.974 4 H 0.097 0.903 5 C -0.172 4.172 6 C -0.071 4.071 7 N -0.260 5.260 8 C -0.062 4.062 9 C -0.144 4.144 10 C -0.128 4.128 11 C -0.028 4.028 12 C -0.661 4.661 13 H 0.069 0.931 14 C -0.239 4.239 15 N -0.575 5.575 16 Si 0.940 3.060 17 H -0.194 1.194 18 H -0.192 1.192 19 H -0.207 1.207 20 C -0.012 4.012 21 H 0.045 0.955 22 C -0.063 4.063 23 N -0.377 5.377 24 C -0.127 4.127 25 H 0.107 0.893 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.006 0.994 39 H 0.003 0.997 40 H 0.064 0.936 41 H 0.043 0.957 42 H 0.096 0.904 43 H 0.155 0.845 44 H 0.167 0.833 45 H 0.102 0.898 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.692 1.237 21.395 23.950 hybrid contribution -0.608 -0.965 0.704 1.340 sum -11.300 0.272 22.099 24.822 Atomic orbital electron populations 1.22907 0.80206 1.03296 1.00612 1.87914 1.20809 1.28620 1.95121 1.22309 0.95330 0.84535 0.95215 0.90314 1.22068 0.98829 0.99852 0.96407 1.22023 0.89075 0.98243 0.97772 1.62022 1.08153 1.53645 1.02190 1.22050 0.96302 0.94318 0.93491 1.21601 0.98551 0.99869 0.94404 1.21288 0.98131 0.98501 0.94894 1.19174 0.94795 0.94923 0.93947 1.22555 1.23648 1.21437 0.98412 0.93131 1.27534 1.01661 0.97833 0.96840 1.70914 1.24668 1.22016 1.39936 0.82923 0.73503 0.74690 0.74922 1.19358 1.19249 1.20736 1.21439 0.95742 0.96572 0.87424 0.95475 1.21776 0.94918 1.00322 0.89315 1.58550 1.40791 1.24012 1.14358 1.21569 0.92134 1.00180 0.98836 0.89310 0.92807 0.93766 0.90744 0.89744 0.91147 0.95912 0.95879 0.89971 0.92137 0.92777 0.93568 0.92937 0.99372 0.99654 0.93610 0.95654 0.90419 0.84451 0.83328 0.89789 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.82 113.37 1.23 1.62 16 2 O -0.41 -8.81 9.22 -148.98 -1.37 -10.19 16 3 C 0.08 1.60 2.93 30.67 0.09 1.69 16 4 H 0.08 1.20 7.79 -2.38 -0.02 1.18 16 5 C -0.13 -2.77 5.79 30.64 0.18 -2.59 16 6 C 0.06 1.50 4.89 86.33 0.42 1.92 16 7 N -0.53 -14.17 4.60 -871.11 -4.01 -18.18 16 8 C 0.07 1.95 4.44 86.30 0.38 2.34 16 9 C -0.11 -3.78 4.71 30.60 0.14 -3.63 16 10 C -0.09 -3.87 5.15 30.60 0.16 -3.71 16 11 C 0.01 0.47 4.28 29.85 0.13 0.60 16 12 C -0.62 -37.08 9.11 25.60 0.23 -36.85 16 13 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 14 C -0.04 -2.50 5.46 84.66 0.46 -2.04 16 15 N -0.94 -60.06 13.65 21.45 0.29 -59.77 16 16 Si 1.12 51.40 29.90 68.60 2.05 53.45 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 20 C 0.10 2.24 1.99 44.94 0.09 2.33 16 21 H 0.03 0.74 7.76 -2.39 -0.02 0.72 16 22 C 0.07 1.37 5.86 86.30 0.51 1.88 16 23 N -0.85 -13.61 8.98 -186.72 -1.68 -15.28 16 24 C -0.09 -1.79 4.96 30.65 0.15 -1.63 16 25 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.05 0.64 8.09 -2.39 -0.02 0.62 16 27 H 0.04 0.62 7.86 -2.39 -0.02 0.60 16 28 H 0.07 1.39 7.86 -2.38 -0.02 1.37 16 29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 2.02 5.84 -2.39 -0.01 2.00 16 31 H 0.02 0.66 7.76 -2.39 -0.02 0.65 16 32 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.08 2.31 6.40 -2.39 -0.02 2.29 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.05 1.95 6.19 -2.39 -0.01 1.94 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 38 H -0.01 -0.69 8.01 -2.39 -0.02 -0.71 16 39 H -0.01 -0.86 8.01 -2.39 -0.02 -0.88 16 40 H 0.25 16.53 7.22 -92.71 -0.67 15.86 16 41 H 0.03 0.55 6.22 -2.39 -0.01 0.53 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.34 5.19 9.07 -89.70 -0.81 4.37 16 44 H 0.35 4.41 9.08 -89.69 -0.81 3.60 16 45 H 0.08 1.67 7.73 -2.39 -0.02 1.65 16 46 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 Total: -1.00 -68.73 351.84 -1.12 -69.86 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -0.58 Total: 18.19 kcal Atomic # 6 Polarization: -42.25 SS G_CDS: 4.17 Total: -38.08 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -5.39 Total: -93.23 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -1.37 Total: -10.19 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 2.05 Total: 53.45 kcal Total: -68.73 -1.12 -69.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385197367.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.504 kcal (2) G-P(sol) polarization free energy of solvation -68.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds