Wall clock time and date at job start Mon Mar 30 2020 05:13:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42892 * 1
3 3 C 1.42901 * 113.99989 * 2 1
4 4 H 1.09006 * 109.52306 * 29.87068 * 3 2 1
5 5 C 1.53114 * 109.57805 * 269.71545 * 3 2 1
6 6 C 1.53035 * 109.27745 * 297.72101 * 5 3 2
7 7 N 1.46847 * 109.52093 * 300.81513 * 6 5 3
8 8 C 1.46899 * 111.00388 * 185.84277 * 7 6 5
9 9 C 1.52999 * 109.47092 * 51.60928 * 8 7 6
10 10 C 1.53006 * 109.47218 * 180.02562 * 9 8 7
11 11 C 1.53001 * 109.47252 * 180.02562 * 10 9 8
12 12 C 1.50693 * 109.47088 * 179.97438 * 11 10 9
13 13 H 1.08004 * 120.00049 * 359.97438 * 12 11 10
14 14 C 1.37879 * 119.99985 * 179.97438 * 12 11 10
15 15 N 1.31514 * 119.99783 * 0.02562 * 14 12 11
16 16 Si 1.86799 * 120.00125 * 180.02562 * 14 12 11
17 17 H 1.48498 * 109.47197 * 60.00245 * 16 14 12
18 18 H 1.48502 * 109.46794 * 300.00179 * 16 14 12
19 19 H 1.48496 * 109.47123 * 180.02562 * 16 14 12
20 20 C 1.46847 * 111.19780 * 61.74629 * 7 6 5
21 21 H 1.08992 * 109.46389 * 58.26767 * 20 7 6
22 22 C 1.53001 * 109.46479 * 178.24488 * 20 7 6
23 23 N 1.46898 * 109.47216 * 183.37219 * 22 20 7
24 24 C 1.53041 * 109.52128 * 298.25721 * 20 7 6
25 25 H 1.09006 * 109.47299 * 180.02562 * 1 2 3
26 26 H 1.09002 * 109.47447 * 300.00074 * 1 2 3
27 27 H 1.09002 * 109.47446 * 59.99787 * 1 2 3
28 28 H 1.09004 * 109.50295 * 57.65556 * 5 3 2
29 29 H 1.08996 * 109.50809 * 177.73525 * 5 3 2
30 30 H 1.09003 * 109.46203 * 180.80760 * 6 5 3
31 31 H 1.08997 * 109.46689 * 60.83457 * 6 5 3
32 32 H 1.09004 * 109.47067 * 291.61689 * 8 7 6
33 33 H 1.09001 * 109.47497 * 171.61297 * 8 7 6
34 34 H 1.09001 * 109.47237 * 60.00247 * 9 8 7
35 35 H 1.09001 * 109.47251 * 300.00519 * 9 8 7
36 36 H 1.08991 * 109.47409 * 59.99786 * 10 9 8
37 37 H 1.09002 * 109.46202 * 299.99732 * 10 9 8
38 38 H 1.09003 * 109.47232 * 59.98984 * 11 10 9
39 39 H 1.09001 * 109.46780 * 299.99561 * 11 10 9
40 40 H 0.96994 * 120.00133 * 359.97438 * 15 14 12
41 41 H 1.09003 * 109.46742 * 303.37304 * 22 20 7
42 42 H 1.08999 * 109.47416 * 63.37040 * 22 20 7
43 43 H 1.00897 * 110.99715 * 65.43302 * 23 22 20
44 44 H 1.00899 * 110.99987 * 189.38902 * 23 22 20
45 45 H 1.08998 * 109.50534 * 179.12165 * 24 20 7
46 46 H 1.09008 * 109.50519 * 299.19828 * 24 20 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 1 1.3444 2.0006 0.5117
5 6 2.2254 1.7713 -1.4426
6 6 3.2081 0.8260 -2.1374
7 7 4.4836 0.8228 -1.4098
8 6 5.4958 0.0342 -2.1250
9 6 5.5742 0.5036 -3.5791
10 6 6.6280 -0.3182 -4.3242
11 6 6.7068 0.1516 -5.7782
12 6 7.7451 -0.6573 -6.5119
13 1 8.2943 -1.4291 -5.9929
14 6 7.9941 -0.4123 -7.8457
15 7 7.3258 0.5279 -8.4774
16 14 9.2807 -1.4155 -8.7553
17 1 8.9055 -2.8518 -8.7186
18 1 10.6027 -1.2324 -8.1040
19 1 9.3573 -0.9594 -10.1665
20 6 4.3099 0.3341 -0.0360
21 1 3.8913 -0.6720 -0.0586
22 6 5.6668 0.3058 0.6705
23 7 5.5061 -0.2586 2.0171
24 6 3.3600 1.2646 0.7216
25 1 -0.3634 -1.0277 0.0005
26 1 -0.3634 0.5138 0.8900
27 1 -0.3634 0.5139 -0.8900
28 1 1.2737 1.7615 -1.9740
29 1 2.6313 2.7828 -1.4417
30 1 3.3746 1.1632 -3.1605
31 1 2.7947 -0.1824 -2.1503
32 1 5.2207 -1.0202 -2.0980
33 1 6.4660 0.1690 -1.6469
34 1 5.8492 1.5580 -3.6062
35 1 4.6039 0.3688 -4.0572
36 1 6.3526 -1.3724 -4.2971
37 1 7.5983 -0.1836 -3.8462
38 1 6.9823 1.2059 -5.8050
39 1 5.7365 0.0174 -6.2564
40 1 6.6575 1.0485 -8.0052
41 1 6.3612 -0.3100 0.0988
42 1 6.0583 1.3202 0.7461
43 1 5.2288 -1.2277 1.9722
44 1 6.3505 -0.1488 2.5584
45 1 3.2190 0.8930 1.7365
46 1 3.7848 2.2679 0.7572
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385197367.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:13:57
Heat of formation + Delta-G solvation = -90.361556 kcal
Electronic energy + Delta-G solvation = -21576.914899 eV
Core-core repulsion = 18499.388554 eV
Total energy + Delta-G solvation = -3077.526346 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-40.90928 -38.48739 -36.86802 -35.57692 -34.64247 -32.94715 -31.39371 -29.70114
-27.52142 -26.47281 -26.00620 -24.92901 -23.06263 -21.97424 -21.61406 -20.59895
-18.87940 -17.60551 -17.10287 -16.68845 -16.64655 -16.26293 -16.09632 -15.83209
-15.63723 -15.30475 -14.86053 -14.71206 -14.43031 -14.09765 -13.85400 -13.59139
-13.29092 -13.05961 -12.92145 -12.76855 -12.66013 -12.37004 -12.16982 -12.04509
-11.97362 -11.85830 -11.83868 -11.53527 -11.31558 -11.19281 -10.64095 -10.55958
-10.41997 -9.60223 -9.28608 -8.71150 -6.41528 1.50877 1.59971 1.79514
2.55704 2.73984 2.94336 3.13884 3.65423 3.74023 3.85799 3.88640
3.99168 4.07721 4.18379 4.28992 4.38417 4.40763 4.48104 4.49543
4.51340 4.55227 4.63825 4.68596 4.72089 4.81114 4.85471 4.89548
4.93281 5.01385 5.02639 5.06899 5.13161 5.15890 5.20615 5.34953
5.44288 5.53795 5.98958 6.03953 6.12508 6.16885 6.23930 6.31939
6.56019 6.58089 7.41212 8.69669
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.025432 B = 0.003362 C = 0.003101
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1100.697511 B = 8326.698875 C = 9026.074966
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.405 6.405
3 C 0.084 3.916
4 H 0.079 0.921
5 C -0.134 4.134
6 C 0.057 3.943
7 N -0.535 5.535
8 C 0.066 3.934
9 C -0.107 4.107
10 C -0.090 4.090
11 C 0.009 3.991
12 C -0.623 4.623
13 H 0.050 0.950
14 C -0.042 4.042
15 N -0.938 5.938
16 Si 1.119 2.881
17 H -0.268 1.268
18 H -0.267 1.267
19 H -0.282 1.282
20 C 0.097 3.903
21 H 0.027 0.973
22 C 0.068 3.932
23 N -0.846 5.846
24 C -0.089 4.089
25 H 0.088 0.912
26 H 0.053 0.947
27 H 0.044 0.956
28 H 0.074 0.926
29 H 0.084 0.916
30 H 0.070 0.930
31 H 0.023 0.977
32 H 0.023 0.977
33 H 0.082 0.918
34 H 0.060 0.940
35 H 0.054 0.946
36 H 0.046 0.954
37 H 0.052 0.948
38 H -0.012 1.012
39 H -0.015 1.015
40 H 0.255 0.745
41 H 0.025 0.975
42 H 0.077 0.923
43 H 0.343 0.657
44 H 0.353 0.647
45 H 0.084 0.916
46 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.110 0.567 22.714 25.292
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.325 6.325
3 C 0.026 3.974
4 H 0.097 0.903
5 C -0.172 4.172
6 C -0.071 4.071
7 N -0.260 5.260
8 C -0.062 4.062
9 C -0.144 4.144
10 C -0.128 4.128
11 C -0.028 4.028
12 C -0.661 4.661
13 H 0.069 0.931
14 C -0.239 4.239
15 N -0.575 5.575
16 Si 0.940 3.060
17 H -0.194 1.194
18 H -0.192 1.192
19 H -0.207 1.207
20 C -0.012 4.012
21 H 0.045 0.955
22 C -0.063 4.063
23 N -0.377 5.377
24 C -0.127 4.127
25 H 0.107 0.893
26 H 0.072 0.928
27 H 0.062 0.938
28 H 0.093 0.907
29 H 0.103 0.897
30 H 0.089 0.911
31 H 0.041 0.959
32 H 0.041 0.959
33 H 0.100 0.900
34 H 0.079 0.921
35 H 0.072 0.928
36 H 0.064 0.936
37 H 0.071 0.929
38 H 0.006 0.994
39 H 0.003 0.997
40 H 0.064 0.936
41 H 0.043 0.957
42 H 0.096 0.904
43 H 0.155 0.845
44 H 0.167 0.833
45 H 0.102 0.898
46 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -10.692 1.237 21.395 23.950
hybrid contribution -0.608 -0.965 0.704 1.340
sum -11.300 0.272 22.099 24.822
Atomic orbital electron populations
1.22907 0.80206 1.03296 1.00612 1.87914 1.20809 1.28620 1.95121
1.22309 0.95330 0.84535 0.95215 0.90314 1.22068 0.98829 0.99852
0.96407 1.22023 0.89075 0.98243 0.97772 1.62022 1.08153 1.53645
1.02190 1.22050 0.96302 0.94318 0.93491 1.21601 0.98551 0.99869
0.94404 1.21288 0.98131 0.98501 0.94894 1.19174 0.94795 0.94923
0.93947 1.22555 1.23648 1.21437 0.98412 0.93131 1.27534 1.01661
0.97833 0.96840 1.70914 1.24668 1.22016 1.39936 0.82923 0.73503
0.74690 0.74922 1.19358 1.19249 1.20736 1.21439 0.95742 0.96572
0.87424 0.95475 1.21776 0.94918 1.00322 0.89315 1.58550 1.40791
1.24012 1.14358 1.21569 0.92134 1.00180 0.98836 0.89310 0.92807
0.93766 0.90744 0.89744 0.91147 0.95912 0.95879 0.89971 0.92137
0.92777 0.93568 0.92937 0.99372 0.99654 0.93610 0.95654 0.90419
0.84451 0.83328 0.89789 0.89940
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.39 10.82 113.37 1.23 1.62 16
2 O -0.41 -8.81 9.22 -148.98 -1.37 -10.19 16
3 C 0.08 1.60 2.93 30.67 0.09 1.69 16
4 H 0.08 1.20 7.79 -2.38 -0.02 1.18 16
5 C -0.13 -2.77 5.79 30.64 0.18 -2.59 16
6 C 0.06 1.50 4.89 86.33 0.42 1.92 16
7 N -0.53 -14.17 4.60 -871.11 -4.01 -18.18 16
8 C 0.07 1.95 4.44 86.30 0.38 2.34 16
9 C -0.11 -3.78 4.71 30.60 0.14 -3.63 16
10 C -0.09 -3.87 5.15 30.60 0.16 -3.71 16
11 C 0.01 0.47 4.28 29.85 0.13 0.60 16
12 C -0.62 -37.08 9.11 25.60 0.23 -36.85 16
13 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16
14 C -0.04 -2.50 5.46 84.66 0.46 -2.04 16
15 N -0.94 -60.06 13.65 21.45 0.29 -59.77 16
16 Si 1.12 51.40 29.90 68.60 2.05 53.45 16
17 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16
18 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16
19 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16
20 C 0.10 2.24 1.99 44.94 0.09 2.33 16
21 H 0.03 0.74 7.76 -2.39 -0.02 0.72 16
22 C 0.07 1.37 5.86 86.30 0.51 1.88 16
23 N -0.85 -13.61 8.98 -186.72 -1.68 -15.28 16
24 C -0.09 -1.79 4.96 30.65 0.15 -1.63 16
25 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16
26 H 0.05 0.64 8.09 -2.39 -0.02 0.62 16
27 H 0.04 0.62 7.86 -2.39 -0.02 0.60 16
28 H 0.07 1.39 7.86 -2.38 -0.02 1.37 16
29 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16
30 H 0.07 2.02 5.84 -2.39 -0.01 2.00 16
31 H 0.02 0.66 7.76 -2.39 -0.02 0.65 16
32 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16
33 H 0.08 2.31 6.40 -2.39 -0.02 2.29 16
34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16
35 H 0.05 1.95 6.19 -2.39 -0.01 1.94 16
36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16
37 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16
38 H -0.01 -0.69 8.01 -2.39 -0.02 -0.71 16
39 H -0.01 -0.86 8.01 -2.39 -0.02 -0.88 16
40 H 0.25 16.53 7.22 -92.71 -0.67 15.86 16
41 H 0.03 0.55 6.22 -2.39 -0.01 0.53 16
42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16
43 H 0.34 5.19 9.07 -89.70 -0.81 4.37 16
44 H 0.35 4.41 9.08 -89.69 -0.81 3.60 16
45 H 0.08 1.67 7.73 -2.39 -0.02 1.65 16
46 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16
Total: -1.00 -68.73 351.84 -1.12 -69.86
By element:
Atomic # 1 Polarization: 18.77 SS G_CDS: -0.58 Total: 18.19 kcal
Atomic # 6 Polarization: -42.25 SS G_CDS: 4.17 Total: -38.08 kcal
Atomic # 7 Polarization: -87.84 SS G_CDS: -5.39 Total: -93.23 kcal
Atomic # 8 Polarization: -8.81 SS G_CDS: -1.37 Total: -10.19 kcal
Atomic # 14 Polarization: 51.40 SS G_CDS: 2.05 Total: 53.45 kcal
Total: -68.73 -1.12 -69.86 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385197367.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.504 kcal
(2) G-P(sol) polarization free energy of solvation -68.734 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.239 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.123 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.857 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.362 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds