Wall clock time and date at job start Mon Mar 30 2020 05:11:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46907 * 1
3 3 C 1.46895 * 110.99872 * 2 1
4 4 C 1.52996 * 109.47683 * 66.03976 * 3 2 1
5 5 N 1.46898 * 109.47314 * 179.97438 * 4 3 2
6 6 C 1.46902 * 111.00038 * 180.02562 * 5 4 3
7 7 C 1.52995 * 109.47336 * 179.97438 * 6 5 4
8 8 O 1.42903 * 109.46837 * 65.00225 * 7 6 5
9 9 C 1.42903 * 113.99992 * 180.02562 * 8 7 6
10 10 C 1.50694 * 109.47305 * 180.02562 * 9 8 7
11 11 H 1.08004 * 119.99564 * 359.97438 * 10 9 8
12 12 C 1.37879 * 120.00138 * 180.02562 * 10 9 8
13 13 N 1.31507 * 120.00015 * 359.97438 * 12 10 9
14 14 Si 1.86800 * 119.99860 * 179.97438 * 12 10 9
15 15 H 1.48501 * 109.47099 * 90.00129 * 14 12 10
16 16 H 1.48500 * 109.47150 * 209.99753 * 14 12 10
17 17 H 1.48501 * 109.47402 * 329.99805 * 14 12 10
18 18 C 1.46892 * 111.00189 * 236.04264 * 2 1 3
19 19 C 1.54961 * 110.92423 * 190.49504 * 18 2 1
20 20 C 1.54270 * 104.16191 * 156.29494 * 19 18 2
21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18
22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19
23 23 H 1.08998 * 109.46887 * 183.95462 * 1 2 3
24 24 H 1.08998 * 109.46845 * 303.95821 * 1 2 3
25 25 H 1.09004 * 109.46731 * 63.95898 * 1 2 3
26 26 H 1.09001 * 109.47438 * 186.04864 * 3 2 1
27 27 H 1.09011 * 109.47091 * 306.04163 * 3 2 1
28 28 H 1.08997 * 109.47811 * 300.00606 * 4 3 2
29 29 H 1.09011 * 109.46704 * 59.99950 * 4 3 2
30 30 H 1.00899 * 111.00003 * 56.04997 * 5 4 3
31 31 H 1.09000 * 109.47006 * 300.00373 * 6 5 4
32 32 H 1.09002 * 109.46854 * 60.00086 * 6 5 4
33 33 H 1.09004 * 109.47472 * 185.00199 * 7 6 5
34 34 H 1.08996 * 109.47213 * 305.00055 * 7 6 5
35 35 H 1.09001 * 109.46989 * 300.00070 * 9 8 7
36 36 H 1.08999 * 109.47232 * 59.99492 * 9 8 7
37 37 H 0.97003 * 120.00365 * 179.97438 * 13 12 10
38 38 H 1.09001 * 110.67587 * 67.18675 * 18 2 1
39 39 H 1.08997 * 110.47708 * 37.64092 * 19 18 2
40 40 H 1.09002 * 110.53308 * 274.97484 * 19 18 2
41 41 H 1.09002 * 110.03399 * 217.13605 * 20 19 18
42 42 H 1.08995 * 110.02943 * 95.75505 * 20 19 18
43 43 H 1.08999 * 110.03405 * 119.26051 * 21 20 19
44 44 H 1.09001 * 110.03705 * 240.64196 * 21 20 19
45 45 H 1.08997 * 110.48788 * 142.28685 * 22 21 20
46 46 H 1.09001 * 110.48482 * 264.93365 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6314 2.0576 1.3181
5 7 2.1584 3.4288 1.3183
6 6 1.8276 4.1197 2.5718
7 6 2.3923 5.5412 2.5349
8 8 1.7368 6.2875 1.5076
9 6 2.1933 7.6364 1.3878
10 6 1.4380 8.3259 0.2811
11 1 0.6849 7.7878 -0.2755
12 6 1.7090 9.6435 -0.0217
13 7 2.6263 10.2986 0.6556
14 14 0.7731 10.4980 -1.3941
15 1 -0.4474 11.1358 -0.8384
16 1 1.6373 11.5365 -2.0106
17 1 0.3855 9.5011 -2.4243
18 6 1.9955 -0.7660 -1.1375
19 6 3.5225 -0.9884 -0.9956
20 6 3.8017 -2.2444 -1.8467
21 6 2.4763 -3.0211 -1.9338
22 6 1.4370 -2.2108 -1.1319
23 1 -0.3633 -1.0252 0.0709
24 1 -0.3633 0.5740 0.8524
25 1 -0.3633 0.4512 -0.9234
26 1 3.0797 1.3445 -0.1083
27 1 1.5611 1.9273 -0.8310
28 1 0.5472 2.0846 1.4264
29 1 2.0657 1.5016 2.1492
30 1 1.8211 3.9458 0.5202
31 1 0.7448 4.1614 2.6889
32 1 2.2633 3.5778 3.4112
33 1 2.2248 6.0238 3.4978
34 1 3.4620 5.5020 2.3295
35 1 2.0220 8.1627 2.3268
36 1 3.2589 7.6403 1.1583
37 1 2.8173 11.2254 0.4424
38 1 1.7643 -0.2661 -2.0781
39 1 3.7866 -1.1674 0.0466
40 1 4.0716 -0.1322 -1.3876
41 1 4.5637 -2.8587 -1.3671
42 1 4.1304 -1.9538 -2.8445
43 1 2.1613 -3.1068 -2.9738
44 1 2.5952 -4.0128 -1.4971
45 1 0.4646 -2.2457 -1.6231
46 1 1.3640 -2.5876 -0.1118
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385220013.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:11:29
Heat of formation + Delta-G solvation = -61.926065 kcal
Electronic energy + Delta-G solvation = -20578.051393 eV
Core-core repulsion = 17501.758103 eV
Total energy + Delta-G solvation = -3076.293290 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-39.27717 -37.31506 -36.24002 -34.69017 -32.69193 -30.36797 -29.20633 -28.07256
-27.37371 -26.38327 -24.35684 -22.35282 -21.42310 -21.30962 -20.32008 -20.01700
-16.69007 -16.44822 -16.07640 -15.83969 -15.50250 -15.07386 -14.75659 -14.70904
-14.32074 -13.93651 -13.54384 -13.37239 -13.24841 -12.90350 -12.60033 -12.17423
-11.95408 -11.65683 -11.61047 -11.47320 -11.21574 -11.17776 -11.03518 -10.99257
-10.83284 -10.80939 -10.67428 -10.66369 -10.44801 -10.00242 -9.10553 -8.82165
-8.51878 -8.17720 -8.16262 -6.10908 -4.12711 3.29696 3.34700 3.39805
3.59336 4.24387 4.34708 4.42884 4.56079 4.69268 4.94948 4.98912
5.06168 5.12196 5.14155 5.25481 5.26068 5.30845 5.36183 5.40129
5.46373 5.55159 5.56138 5.63387 5.67657 5.74446 5.75649 5.82273
5.88402 5.94845 5.99413 6.05090 6.09500 6.13235 6.22617 6.37059
6.88767 6.95941 7.12229 7.24957 7.44725 7.66288 7.78808 8.15642
8.58357 9.00423 9.52075 11.00619
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.023770 B = 0.002724 C = 0.002607
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1177.668582 B =10278.307600 C =10739.741497
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 N -0.534 5.534
3 C 0.055 3.945
4 C 0.063 3.937
5 N -0.688 5.688
6 C 0.069 3.931
7 C 0.062 3.938
8 O -0.400 6.400
9 C 0.197 3.803
10 C -0.515 4.515
11 H 0.065 0.935
12 C 0.056 3.944
13 N -0.898 5.898
14 Si 0.908 3.092
15 H -0.279 1.279
16 H -0.285 1.285
17 H -0.272 1.272
18 C 0.077 3.923
19 C -0.116 4.116
20 C -0.124 4.124
21 C -0.123 4.123
22 C -0.116 4.116
23 H 0.068 0.932
24 H 0.070 0.930
25 H 0.024 0.976
26 H 0.085 0.915
27 H 0.033 0.967
28 H 0.026 0.974
29 H 0.075 0.925
30 H 0.354 0.646
31 H 0.033 0.967
32 H 0.075 0.925
33 H 0.041 0.959
34 H 0.047 0.953
35 H 0.004 0.996
36 H 0.006 0.994
37 H 0.264 0.736
38 H 0.047 0.953
39 H 0.077 0.923
40 H 0.064 0.936
41 H 0.064 0.936
42 H 0.062 0.938
43 H 0.061 0.939
44 H 0.064 0.936
45 H 0.061 0.939
46 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.840 -25.255 -1.763 25.331
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 N -0.258 5.258
3 C -0.073 4.073
4 C -0.066 4.066
5 N -0.321 5.321
6 C -0.061 4.061
7 C -0.016 4.016
8 O -0.320 6.320
9 C 0.123 3.877
10 C -0.553 4.553
11 H 0.083 0.917
12 C -0.145 4.145
13 N -0.537 5.537
14 Si 0.735 3.265
15 H -0.205 1.205
16 H -0.211 1.211
17 H -0.197 1.197
18 C -0.031 4.031
19 C -0.154 4.154
20 C -0.162 4.162
21 C -0.162 4.162
22 C -0.154 4.154
23 H 0.086 0.914
24 H 0.089 0.911
25 H 0.043 0.957
26 H 0.103 0.897
27 H 0.052 0.948
28 H 0.044 0.956
29 H 0.094 0.906
30 H 0.173 0.827
31 H 0.051 0.949
32 H 0.093 0.907
33 H 0.059 0.941
34 H 0.065 0.935
35 H 0.022 0.978
36 H 0.024 0.976
37 H 0.074 0.926
38 H 0.065 0.935
39 H 0.096 0.904
40 H 0.083 0.917
41 H 0.083 0.917
42 H 0.080 0.920
43 H 0.080 0.920
44 H 0.082 0.918
45 H 0.080 0.920
46 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -0.115 -25.558 -1.226 25.588
hybrid contribution -1.441 1.335 -1.338 2.377
sum -1.556 -24.223 -2.565 24.408
Atomic orbital electron populations
1.22463 0.87678 1.02058 1.00741 1.62005 1.07633 1.13771 1.42428
1.22081 1.01160 0.87272 0.96752 1.21893 0.96926 0.89980 0.97825
1.60382 1.63638 1.02411 1.05717 1.21923 0.98399 0.93491 0.92256
1.22304 0.96664 0.90706 0.91954 1.87783 1.63377 1.27008 1.53830
1.20171 0.94702 0.76356 0.96483 1.21050 1.21200 0.96019 1.17037
0.91674 1.24952 0.95479 0.97025 0.97081 1.69960 1.32081 1.10824
1.40852 0.86342 0.79447 0.79092 0.81628 1.20499 1.21054 1.19664
1.22665 0.95228 0.93706 0.91538 1.22402 0.94554 0.97421 1.00991
1.22094 0.97401 0.96624 1.00080 1.22088 0.95098 0.98874 1.00090
1.22412 0.97931 0.94136 1.00933 0.91356 0.91101 0.95733 0.89672
0.94843 0.95573 0.90635 0.82710 0.94866 0.90650 0.94131 0.93519
0.97829 0.97596 0.92646 0.93509 0.90427 0.91683 0.91716 0.91953
0.92026 0.91768 0.92046 0.90560
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.18 9.08 60.07 0.55 0.72 16
2 N -0.53 -5.56 4.66 -232.44 -1.08 -6.65 16
3 C 0.06 0.65 5.12 -3.83 -0.02 0.63 16
4 C 0.06 0.80 5.62 -3.83 -0.02 0.78 16
5 N -0.69 -10.51 6.50 -113.78 -0.74 -11.25 16
6 C 0.07 1.06 6.11 -3.83 -0.02 1.04 16
7 C 0.06 1.17 6.28 37.15 0.23 1.40 16
8 O -0.40 -9.64 9.85 -35.23 -0.35 -9.99 16
9 C 0.20 5.47 5.69 36.00 0.20 5.67 16
10 C -0.51 -15.25 9.43 -34.44 -0.32 -15.58 16
11 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16
12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16
13 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16
14 Si 0.91 21.94 29.54 -169.99 -5.02 16.92 16
15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16
18 C 0.08 0.72 2.58 -65.68 -0.17 0.55 16
19 C -0.12 -1.02 5.50 -25.03 -0.14 -1.16 16
20 C -0.12 -0.91 6.80 -25.61 -0.17 -1.09 16
21 C -0.12 -0.86 6.80 -25.62 -0.17 -1.03 16
22 C -0.12 -0.91 4.99 -25.07 -0.12 -1.04 16
23 H 0.07 0.56 6.93 -51.93 -0.36 0.20 16
24 H 0.07 0.68 6.30 -51.93 -0.33 0.36 16
25 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16
26 H 0.08 1.03 6.86 -51.93 -0.36 0.67 16
27 H 0.03 0.42 8.12 -51.92 -0.42 0.00 16
28 H 0.03 0.33 6.47 -51.93 -0.34 -0.01 16
29 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16
30 H 0.35 5.98 8.29 -39.29 -0.33 5.65 16
31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16
32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16
33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16
34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16
35 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16
36 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16
37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16
40 H 0.06 0.59 7.76 -51.93 -0.40 0.19 16
41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16
42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
45 H 0.06 0.45 7.97 -51.93 -0.41 0.04 16
46 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
LS Contribution 361.56 15.07 5.45 5.45
Total: -1.00 -30.42 361.56 -10.12 -40.54
By element:
Atomic # 1 Polarization: 7.73 SS G_CDS: -8.83 Total: -1.10 kcal
Atomic # 6 Polarization: -7.29 SS G_CDS: -0.28 Total: -7.57 kcal
Atomic # 7 Polarization: -43.16 SS G_CDS: -1.09 Total: -44.24 kcal
Atomic # 8 Polarization: -9.64 SS G_CDS: -0.35 Total: -9.99 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -30.42 -10.12 -40.54 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385220013.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.387 kcal
(2) G-P(sol) polarization free energy of solvation -30.419 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.806 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.926 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds