Wall clock time and date at job start Mon Mar 30 2020 05:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46895 * 110.99872 * 2 1 4 4 C 1.52996 * 109.47683 * 66.03976 * 3 2 1 5 5 N 1.46898 * 109.47314 * 179.97438 * 4 3 2 6 6 C 1.46902 * 111.00038 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47336 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.46837 * 65.00225 * 7 6 5 9 9 C 1.42903 * 113.99992 * 180.02562 * 8 7 6 10 10 C 1.50694 * 109.47305 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99564 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00138 * 180.02562 * 10 9 8 13 13 N 1.31507 * 120.00015 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99860 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47099 * 90.00129 * 14 12 10 16 16 H 1.48500 * 109.47150 * 209.99753 * 14 12 10 17 17 H 1.48501 * 109.47402 * 329.99805 * 14 12 10 18 18 C 1.46892 * 111.00189 * 236.04264 * 2 1 3 19 19 C 1.54961 * 110.92423 * 190.49504 * 18 2 1 20 20 C 1.54270 * 104.16191 * 156.29494 * 19 18 2 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 1.08998 * 109.46887 * 183.95462 * 1 2 3 24 24 H 1.08998 * 109.46845 * 303.95821 * 1 2 3 25 25 H 1.09004 * 109.46731 * 63.95898 * 1 2 3 26 26 H 1.09001 * 109.47438 * 186.04864 * 3 2 1 27 27 H 1.09011 * 109.47091 * 306.04163 * 3 2 1 28 28 H 1.08997 * 109.47811 * 300.00606 * 4 3 2 29 29 H 1.09011 * 109.46704 * 59.99950 * 4 3 2 30 30 H 1.00899 * 111.00003 * 56.04997 * 5 4 3 31 31 H 1.09000 * 109.47006 * 300.00373 * 6 5 4 32 32 H 1.09002 * 109.46854 * 60.00086 * 6 5 4 33 33 H 1.09004 * 109.47472 * 185.00199 * 7 6 5 34 34 H 1.08996 * 109.47213 * 305.00055 * 7 6 5 35 35 H 1.09001 * 109.46989 * 300.00070 * 9 8 7 36 36 H 1.08999 * 109.47232 * 59.99492 * 9 8 7 37 37 H 0.97003 * 120.00365 * 179.97438 * 13 12 10 38 38 H 1.09001 * 110.67587 * 67.18675 * 18 2 1 39 39 H 1.08997 * 110.47708 * 37.64092 * 19 18 2 40 40 H 1.09002 * 110.53308 * 274.97484 * 19 18 2 41 41 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 42 42 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 43 43 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 44 44 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 45 45 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 46 46 H 1.09001 * 110.48482 * 264.93365 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0576 1.3181 5 7 2.1584 3.4288 1.3183 6 6 1.8276 4.1197 2.5718 7 6 2.3923 5.5412 2.5349 8 8 1.7368 6.2875 1.5076 9 6 2.1933 7.6364 1.3878 10 6 1.4380 8.3259 0.2811 11 1 0.6849 7.7878 -0.2755 12 6 1.7090 9.6435 -0.0217 13 7 2.6263 10.2986 0.6556 14 14 0.7731 10.4980 -1.3941 15 1 -0.4474 11.1358 -0.8384 16 1 1.6373 11.5365 -2.0106 17 1 0.3855 9.5011 -2.4243 18 6 1.9955 -0.7660 -1.1375 19 6 3.5225 -0.9884 -0.9956 20 6 3.8017 -2.2444 -1.8467 21 6 2.4763 -3.0211 -1.9338 22 6 1.4370 -2.2108 -1.1319 23 1 -0.3633 -1.0252 0.0709 24 1 -0.3633 0.5740 0.8524 25 1 -0.3633 0.4512 -0.9234 26 1 3.0797 1.3445 -0.1083 27 1 1.5611 1.9273 -0.8310 28 1 0.5472 2.0846 1.4264 29 1 2.0657 1.5016 2.1492 30 1 1.8211 3.9458 0.5202 31 1 0.7448 4.1614 2.6889 32 1 2.2633 3.5778 3.4112 33 1 2.2248 6.0238 3.4978 34 1 3.4620 5.5020 2.3295 35 1 2.0220 8.1627 2.3268 36 1 3.2589 7.6403 1.1583 37 1 2.8173 11.2254 0.4424 38 1 1.7643 -0.2661 -2.0781 39 1 3.7866 -1.1674 0.0466 40 1 4.0716 -0.1322 -1.3876 41 1 4.5637 -2.8587 -1.3671 42 1 4.1304 -1.9538 -2.8445 43 1 2.1613 -3.1068 -2.9738 44 1 2.5952 -4.0128 -1.4971 45 1 0.4646 -2.2457 -1.6231 46 1 1.3640 -2.5876 -0.1118 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385220013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:29 Heat of formation + Delta-G solvation = -61.926065 kcal Electronic energy + Delta-G solvation = -20578.051393 eV Core-core repulsion = 17501.758103 eV Total energy + Delta-G solvation = -3076.293290 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.27717 -37.31506 -36.24002 -34.69017 -32.69193 -30.36797 -29.20633 -28.07256 -27.37371 -26.38327 -24.35684 -22.35282 -21.42310 -21.30962 -20.32008 -20.01700 -16.69007 -16.44822 -16.07640 -15.83969 -15.50250 -15.07386 -14.75659 -14.70904 -14.32074 -13.93651 -13.54384 -13.37239 -13.24841 -12.90350 -12.60033 -12.17423 -11.95408 -11.65683 -11.61047 -11.47320 -11.21574 -11.17776 -11.03518 -10.99257 -10.83284 -10.80939 -10.67428 -10.66369 -10.44801 -10.00242 -9.10553 -8.82165 -8.51878 -8.17720 -8.16262 -6.10908 -4.12711 3.29696 3.34700 3.39805 3.59336 4.24387 4.34708 4.42884 4.56079 4.69268 4.94948 4.98912 5.06168 5.12196 5.14155 5.25481 5.26068 5.30845 5.36183 5.40129 5.46373 5.55159 5.56138 5.63387 5.67657 5.74446 5.75649 5.82273 5.88402 5.94845 5.99413 6.05090 6.09500 6.13235 6.22617 6.37059 6.88767 6.95941 7.12229 7.24957 7.44725 7.66288 7.78808 8.15642 8.58357 9.00423 9.52075 11.00619 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.023770 B = 0.002724 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.668582 B =10278.307600 C =10739.741497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.534 5.534 3 C 0.055 3.945 4 C 0.063 3.937 5 N -0.688 5.688 6 C 0.069 3.931 7 C 0.062 3.938 8 O -0.400 6.400 9 C 0.197 3.803 10 C -0.515 4.515 11 H 0.065 0.935 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.908 3.092 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.077 3.923 19 C -0.116 4.116 20 C -0.124 4.124 21 C -0.123 4.123 22 C -0.116 4.116 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.024 0.976 26 H 0.085 0.915 27 H 0.033 0.967 28 H 0.026 0.974 29 H 0.075 0.925 30 H 0.354 0.646 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.047 0.953 35 H 0.004 0.996 36 H 0.006 0.994 37 H 0.264 0.736 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 -25.255 -1.763 25.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.258 5.258 3 C -0.073 4.073 4 C -0.066 4.066 5 N -0.321 5.321 6 C -0.061 4.061 7 C -0.016 4.016 8 O -0.320 6.320 9 C 0.123 3.877 10 C -0.553 4.553 11 H 0.083 0.917 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.735 3.265 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.031 4.031 19 C -0.154 4.154 20 C -0.162 4.162 21 C -0.162 4.162 22 C -0.154 4.154 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.043 0.957 26 H 0.103 0.897 27 H 0.052 0.948 28 H 0.044 0.956 29 H 0.094 0.906 30 H 0.173 0.827 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.022 0.978 36 H 0.024 0.976 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.115 -25.558 -1.226 25.588 hybrid contribution -1.441 1.335 -1.338 2.377 sum -1.556 -24.223 -2.565 24.408 Atomic orbital electron populations 1.22463 0.87678 1.02058 1.00741 1.62005 1.07633 1.13771 1.42428 1.22081 1.01160 0.87272 0.96752 1.21893 0.96926 0.89980 0.97825 1.60382 1.63638 1.02411 1.05717 1.21923 0.98399 0.93491 0.92256 1.22304 0.96664 0.90706 0.91954 1.87783 1.63377 1.27008 1.53830 1.20171 0.94702 0.76356 0.96483 1.21050 1.21200 0.96019 1.17037 0.91674 1.24952 0.95479 0.97025 0.97081 1.69960 1.32081 1.10824 1.40852 0.86342 0.79447 0.79092 0.81628 1.20499 1.21054 1.19664 1.22665 0.95228 0.93706 0.91538 1.22402 0.94554 0.97421 1.00991 1.22094 0.97401 0.96624 1.00080 1.22088 0.95098 0.98874 1.00090 1.22412 0.97931 0.94136 1.00933 0.91356 0.91101 0.95733 0.89672 0.94843 0.95573 0.90635 0.82710 0.94866 0.90650 0.94131 0.93519 0.97829 0.97596 0.92646 0.93509 0.90427 0.91683 0.91716 0.91953 0.92026 0.91768 0.92046 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.08 60.07 0.55 0.72 16 2 N -0.53 -5.56 4.66 -232.44 -1.08 -6.65 16 3 C 0.06 0.65 5.12 -3.83 -0.02 0.63 16 4 C 0.06 0.80 5.62 -3.83 -0.02 0.78 16 5 N -0.69 -10.51 6.50 -113.78 -0.74 -11.25 16 6 C 0.07 1.06 6.11 -3.83 -0.02 1.04 16 7 C 0.06 1.17 6.28 37.15 0.23 1.40 16 8 O -0.40 -9.64 9.85 -35.23 -0.35 -9.99 16 9 C 0.20 5.47 5.69 36.00 0.20 5.67 16 10 C -0.51 -15.25 9.43 -34.44 -0.32 -15.58 16 11 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 14 Si 0.91 21.94 29.54 -169.99 -5.02 16.92 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 C 0.08 0.72 2.58 -65.68 -0.17 0.55 16 19 C -0.12 -1.02 5.50 -25.03 -0.14 -1.16 16 20 C -0.12 -0.91 6.80 -25.61 -0.17 -1.09 16 21 C -0.12 -0.86 6.80 -25.62 -0.17 -1.03 16 22 C -0.12 -0.91 4.99 -25.07 -0.12 -1.04 16 23 H 0.07 0.56 6.93 -51.93 -0.36 0.20 16 24 H 0.07 0.68 6.30 -51.93 -0.33 0.36 16 25 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.08 1.03 6.86 -51.93 -0.36 0.67 16 27 H 0.03 0.42 8.12 -51.92 -0.42 0.00 16 28 H 0.03 0.33 6.47 -51.93 -0.34 -0.01 16 29 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 30 H 0.35 5.98 8.29 -39.29 -0.33 5.65 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 36 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.59 7.76 -51.93 -0.40 0.19 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.45 7.97 -51.93 -0.41 0.04 16 46 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 361.56 15.07 5.45 5.45 Total: -1.00 -30.42 361.56 -10.12 -40.54 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.83 Total: -1.10 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -0.28 Total: -7.57 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -1.09 Total: -44.24 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.35 Total: -9.99 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.42 -10.12 -40.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385220013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.387 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds