Wall clock time and date at job start Mon Mar 30 2020 05:11:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46907 * 1
3 3 C 1.46895 * 110.99872 * 2 1
4 4 C 1.52996 * 109.47683 * 66.03976 * 3 2 1
5 5 N 1.46898 * 109.47314 * 179.97438 * 4 3 2
6 6 C 1.46902 * 111.00038 * 180.02562 * 5 4 3
7 7 C 1.52995 * 109.47336 * 179.97438 * 6 5 4
8 8 O 1.42903 * 109.46837 * 65.00225 * 7 6 5
9 9 C 1.42903 * 113.99992 * 180.02562 * 8 7 6
10 10 C 1.50694 * 109.47305 * 180.02562 * 9 8 7
11 11 H 1.08004 * 119.99564 * 359.97438 * 10 9 8
12 12 C 1.37879 * 120.00138 * 180.02562 * 10 9 8
13 13 N 1.31507 * 120.00015 * 359.97438 * 12 10 9
14 14 Si 1.86800 * 119.99860 * 179.97438 * 12 10 9
15 15 H 1.48501 * 109.47099 * 90.00129 * 14 12 10
16 16 H 1.48500 * 109.47150 * 209.99753 * 14 12 10
17 17 H 1.48501 * 109.47402 * 329.99805 * 14 12 10
18 18 C 1.46892 * 111.00189 * 236.04264 * 2 1 3
19 19 C 1.54961 * 110.92423 * 190.49504 * 18 2 1
20 20 C 1.54270 * 104.16191 * 156.29494 * 19 18 2
21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18
22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19
23 23 H 1.08998 * 109.46887 * 183.95462 * 1 2 3
24 24 H 1.08998 * 109.46845 * 303.95821 * 1 2 3
25 25 H 1.09004 * 109.46731 * 63.95898 * 1 2 3
26 26 H 1.09001 * 109.47438 * 186.04864 * 3 2 1
27 27 H 1.09011 * 109.47091 * 306.04163 * 3 2 1
28 28 H 1.08997 * 109.47811 * 300.00606 * 4 3 2
29 29 H 1.09011 * 109.46704 * 59.99950 * 4 3 2
30 30 H 1.00899 * 111.00003 * 56.04997 * 5 4 3
31 31 H 1.09000 * 109.47006 * 300.00373 * 6 5 4
32 32 H 1.09002 * 109.46854 * 60.00086 * 6 5 4
33 33 H 1.09004 * 109.47472 * 185.00199 * 7 6 5
34 34 H 1.08996 * 109.47213 * 305.00055 * 7 6 5
35 35 H 1.09001 * 109.46989 * 300.00070 * 9 8 7
36 36 H 1.08999 * 109.47232 * 59.99492 * 9 8 7
37 37 H 0.97003 * 120.00365 * 179.97438 * 13 12 10
38 38 H 1.09001 * 110.67587 * 67.18675 * 18 2 1
39 39 H 1.08997 * 110.47708 * 37.64092 * 19 18 2
40 40 H 1.09002 * 110.53308 * 274.97484 * 19 18 2
41 41 H 1.09002 * 110.03399 * 217.13605 * 20 19 18
42 42 H 1.08995 * 110.02943 * 95.75505 * 20 19 18
43 43 H 1.08999 * 110.03405 * 119.26051 * 21 20 19
44 44 H 1.09001 * 110.03705 * 240.64196 * 21 20 19
45 45 H 1.08997 * 110.48788 * 142.28685 * 22 21 20
46 46 H 1.09001 * 110.48482 * 264.93365 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4691 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.6314 2.0576 1.3181
5 7 2.1584 3.4288 1.3183
6 6 1.8276 4.1197 2.5718
7 6 2.3923 5.5412 2.5349
8 8 1.7368 6.2875 1.5076
9 6 2.1933 7.6364 1.3878
10 6 1.4380 8.3259 0.2811
11 1 0.6849 7.7878 -0.2755
12 6 1.7090 9.6435 -0.0217
13 7 2.6263 10.2986 0.6556
14 14 0.7731 10.4980 -1.3941
15 1 -0.4474 11.1358 -0.8384
16 1 1.6373 11.5365 -2.0106
17 1 0.3855 9.5011 -2.4243
18 6 1.9955 -0.7660 -1.1375
19 6 3.5225 -0.9884 -0.9956
20 6 3.8017 -2.2444 -1.8467
21 6 2.4763 -3.0211 -1.9338
22 6 1.4370 -2.2108 -1.1319
23 1 -0.3633 -1.0252 0.0709
24 1 -0.3633 0.5740 0.8524
25 1 -0.3633 0.4512 -0.9234
26 1 3.0797 1.3445 -0.1083
27 1 1.5611 1.9273 -0.8310
28 1 0.5472 2.0846 1.4264
29 1 2.0657 1.5016 2.1492
30 1 1.8211 3.9458 0.5202
31 1 0.7448 4.1614 2.6889
32 1 2.2633 3.5778 3.4112
33 1 2.2248 6.0238 3.4978
34 1 3.4620 5.5020 2.3295
35 1 2.0220 8.1627 2.3268
36 1 3.2589 7.6403 1.1583
37 1 2.8173 11.2254 0.4424
38 1 1.7643 -0.2661 -2.0781
39 1 3.7866 -1.1674 0.0466
40 1 4.0716 -0.1322 -1.3876
41 1 4.5637 -2.8587 -1.3671
42 1 4.1304 -1.9538 -2.8445
43 1 2.1613 -3.1068 -2.9738
44 1 2.5952 -4.0128 -1.4971
45 1 0.4646 -2.2457 -1.6231
46 1 1.3640 -2.5876 -0.1118
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385220013.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:11:29
Heat of formation + Delta-G solvation = -82.531737 kcal
Electronic energy + Delta-G solvation = -20578.944922 eV
Core-core repulsion = 17501.758103 eV
Total energy + Delta-G solvation = -3077.186819 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-40.04533 -38.91047 -37.40145 -35.82268 -34.84338 -31.61420 -29.98496 -29.37925
-28.60591 -27.74073 -25.29881 -24.52545 -22.75390 -22.32995 -20.93859 -20.78567
-18.65330 -17.69557 -17.34499 -17.01893 -16.75714 -16.40272 -16.20365 -15.86576
-15.71361 -15.15405 -14.71209 -14.52845 -14.20733 -14.02121 -13.83883 -13.40204
-13.21807 -13.06660 -12.83839 -12.69546 -12.62498 -12.45096 -12.29324 -12.17365
-11.96517 -11.82393 -11.71656 -11.59868 -11.55871 -11.28846 -11.23396 -10.88454
-10.24352 -9.44006 -9.30543 -8.33263 -6.45869 1.38970 1.41901 1.53868
2.33495 2.70262 3.00521 3.20536 3.42224 3.63395 3.79296 3.97598
4.05387 4.10983 4.24167 4.35123 4.40384 4.44645 4.52754 4.55386
4.58803 4.59171 4.66217 4.75646 4.77545 4.81348 4.84153 4.91628
4.95548 4.97643 5.02012 5.05968 5.10683 5.17504 5.22573 5.29083
5.33185 5.49977 5.53241 5.94378 5.98698 6.10462 6.16823 6.35870
6.51890 6.80231 7.26043 8.79133
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.023770 B = 0.002724 C = 0.002607
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1177.668582 B =10278.307600 C =10739.741497
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 N -0.536 5.536
3 C 0.063 3.937
4 C 0.071 3.929
5 N -0.697 5.697
6 C 0.078 3.922
7 C 0.054 3.946
8 O -0.409 6.409
9 C 0.211 3.789
10 C -0.548 4.548
11 H 0.062 0.938
12 C 0.005 3.995
13 N -0.931 5.931
14 Si 0.984 3.016
15 H -0.268 1.268
16 H -0.274 1.274
17 H -0.264 1.264
18 C 0.073 3.927
19 C -0.115 4.115
20 C -0.122 4.122
21 C -0.121 4.121
22 C -0.111 4.111
23 H 0.083 0.917
24 H 0.069 0.931
25 H 0.019 0.981
26 H 0.079 0.921
27 H 0.021 0.979
28 H 0.030 0.970
29 H 0.082 0.918
30 H 0.342 0.658
31 H 0.033 0.967
32 H 0.105 0.895
33 H 0.050 0.950
34 H 0.043 0.957
35 H -0.014 1.014
36 H -0.015 1.015
37 H 0.271 0.729
38 H 0.037 0.963
39 H 0.070 0.930
40 H 0.056 0.944
41 H 0.072 0.928
42 H 0.064 0.936
43 H 0.067 0.933
44 H 0.074 0.926
45 H 0.067 0.933
46 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.635 -26.389 -2.357 26.544
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 N -0.260 5.260
3 C -0.066 4.066
4 C -0.058 4.058
5 N -0.329 5.329
6 C -0.051 4.051
7 C -0.023 4.023
8 O -0.329 6.329
9 C 0.136 3.864
10 C -0.586 4.586
11 H 0.080 0.920
12 C -0.193 4.193
13 N -0.570 5.570
14 Si 0.807 3.193
15 H -0.193 1.193
16 H -0.199 1.199
17 H -0.189 1.189
18 C -0.036 4.036
19 C -0.153 4.153
20 C -0.160 4.160
21 C -0.159 4.159
22 C -0.149 4.149
23 H 0.102 0.898
24 H 0.087 0.913
25 H 0.038 0.962
26 H 0.097 0.903
27 H 0.039 0.961
28 H 0.048 0.952
29 H 0.100 0.900
30 H 0.159 0.841
31 H 0.052 0.948
32 H 0.123 0.877
33 H 0.068 0.932
34 H 0.062 0.938
35 H 0.003 0.997
36 H 0.003 0.997
37 H 0.080 0.920
38 H 0.055 0.945
39 H 0.089 0.911
40 H 0.075 0.925
41 H 0.090 0.910
42 H 0.083 0.917
43 H 0.086 0.914
44 H 0.093 0.907
45 H 0.086 0.914
46 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -0.906 -26.725 -1.800 26.801
hybrid contribution -1.145 1.627 -1.084 2.266
sum -2.052 -25.098 -2.885 25.347
Atomic orbital electron populations
1.22497 0.87041 1.02966 1.00402 1.62039 1.08236 1.12771 1.42975
1.21947 1.00761 0.87991 0.95871 1.21867 0.97022 0.88495 0.98457
1.60419 1.64020 1.03402 1.05092 1.21890 0.98384 0.91450 0.93388
1.22617 0.96517 0.92232 0.90984 1.87748 1.63908 1.25484 1.55778
1.19794 0.93296 0.78080 0.95227 1.21384 1.21989 0.97098 1.18111
0.91991 1.25982 0.96201 0.97490 0.99673 1.70069 1.33161 1.11455
1.42291 0.85171 0.78204 0.77896 0.78060 1.19266 1.19914 1.18856
1.22743 0.95715 0.94428 0.90681 1.22382 0.94146 0.97965 1.00837
1.22095 0.97994 0.96003 0.99948 1.22093 0.94356 0.99073 1.00398
1.22382 0.98480 0.92948 1.01099 0.89846 0.91276 0.96200 0.90257
0.96051 0.95233 0.89957 0.84067 0.94846 0.87683 0.93176 0.93833
0.99674 0.99744 0.92019 0.94455 0.91102 0.92500 0.90966 0.91699
0.91430 0.90726 0.91439 0.90744
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.34 9.08 127.69 1.16 1.50 16
2 N -0.54 -10.74 4.66 -889.31 -4.15 -14.88 16
3 C 0.06 1.45 5.12 86.30 0.44 1.89 16
4 C 0.07 1.72 5.62 86.30 0.48 2.20 16
5 N -0.70 -20.95 6.50 -513.89 -3.34 -24.29 16
6 C 0.08 2.33 6.11 86.30 0.53 2.86 16
7 C 0.05 2.04 6.28 71.98 0.45 2.49 16
8 O -0.41 -20.09 9.85 -148.98 -1.47 -21.55 16
9 C 0.21 12.06 5.69 71.23 0.41 12.46 16
10 C -0.55 -32.98 9.43 25.60 0.24 -32.74 16
11 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16
12 C 0.01 0.29 5.46 84.66 0.46 0.76 16
13 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16
14 Si 0.98 44.63 29.54 68.60 2.03 46.66 16
15 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16
16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16
17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16
18 C 0.07 1.31 2.58 46.24 0.12 1.42 16
19 C -0.12 -1.97 5.50 31.70 0.17 -1.80 16
20 C -0.12 -1.64 6.80 31.32 0.21 -1.43 16
21 C -0.12 -1.46 6.80 31.32 0.21 -1.24 16
22 C -0.11 -1.57 4.99 31.67 0.16 -1.41 16
23 H 0.08 1.23 6.93 -2.39 -0.02 1.21 16
24 H 0.07 1.25 6.30 -2.39 -0.02 1.24 16
25 H 0.02 0.37 8.14 -2.38 -0.02 0.35 16
26 H 0.08 1.92 6.86 -2.39 -0.02 1.90 16
27 H 0.02 0.54 8.12 -2.38 -0.02 0.52 16
28 H 0.03 0.71 6.47 -2.39 -0.02 0.69 16
29 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16
30 H 0.34 11.66 8.29 -89.69 -0.74 10.91 16
31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16
32 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16
33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16
34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16
35 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16
36 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16
37 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16
38 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16
39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16
40 H 0.06 1.04 7.76 -2.39 -0.02 1.02 16
41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16
42 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16
43 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16
44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16
45 H 0.07 0.87 7.97 -2.39 -0.02 0.85 16
46 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16
Total: -1.00 -64.82 361.56 -1.42 -66.24
By element:
Atomic # 1 Polarization: 16.90 SS G_CDS: 0.17 Total: 17.08 kcal
Atomic # 6 Polarization: -18.08 SS G_CDS: 5.05 Total: -13.03 kcal
Atomic # 7 Polarization: -88.19 SS G_CDS: -7.20 Total: -95.39 kcal
Atomic # 8 Polarization: -20.09 SS G_CDS: -1.47 Total: -21.55 kcal
Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal
Total: -64.82 -1.42 -66.24 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385220013.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -16.288 kcal
(2) G-P(sol) polarization free energy of solvation -64.825 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.113 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.419 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.244 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.532 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds