Wall clock time and date at job start Mon Mar 30 2020 05:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46895 * 110.99872 * 2 1 4 4 C 1.52996 * 109.47683 * 66.03976 * 3 2 1 5 5 N 1.46898 * 109.47314 * 179.97438 * 4 3 2 6 6 C 1.46902 * 111.00038 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47336 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.46837 * 65.00225 * 7 6 5 9 9 C 1.42903 * 113.99992 * 180.02562 * 8 7 6 10 10 C 1.50694 * 109.47305 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99564 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00138 * 180.02562 * 10 9 8 13 13 N 1.31507 * 120.00015 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99860 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47099 * 90.00129 * 14 12 10 16 16 H 1.48500 * 109.47150 * 209.99753 * 14 12 10 17 17 H 1.48501 * 109.47402 * 329.99805 * 14 12 10 18 18 C 1.46892 * 111.00189 * 236.04264 * 2 1 3 19 19 C 1.54961 * 110.92423 * 190.49504 * 18 2 1 20 20 C 1.54270 * 104.16191 * 156.29494 * 19 18 2 21 21 C 1.53869 * 106.63967 * 336.44607 * 20 19 18 22 22 C 1.54268 * 106.60115 * 359.97438 * 21 20 19 23 23 H 1.08998 * 109.46887 * 183.95462 * 1 2 3 24 24 H 1.08998 * 109.46845 * 303.95821 * 1 2 3 25 25 H 1.09004 * 109.46731 * 63.95898 * 1 2 3 26 26 H 1.09001 * 109.47438 * 186.04864 * 3 2 1 27 27 H 1.09011 * 109.47091 * 306.04163 * 3 2 1 28 28 H 1.08997 * 109.47811 * 300.00606 * 4 3 2 29 29 H 1.09011 * 109.46704 * 59.99950 * 4 3 2 30 30 H 1.00899 * 111.00003 * 56.04997 * 5 4 3 31 31 H 1.09000 * 109.47006 * 300.00373 * 6 5 4 32 32 H 1.09002 * 109.46854 * 60.00086 * 6 5 4 33 33 H 1.09004 * 109.47472 * 185.00199 * 7 6 5 34 34 H 1.08996 * 109.47213 * 305.00055 * 7 6 5 35 35 H 1.09001 * 109.46989 * 300.00070 * 9 8 7 36 36 H 1.08999 * 109.47232 * 59.99492 * 9 8 7 37 37 H 0.97003 * 120.00365 * 179.97438 * 13 12 10 38 38 H 1.09001 * 110.67587 * 67.18675 * 18 2 1 39 39 H 1.08997 * 110.47708 * 37.64092 * 19 18 2 40 40 H 1.09002 * 110.53308 * 274.97484 * 19 18 2 41 41 H 1.09002 * 110.03399 * 217.13605 * 20 19 18 42 42 H 1.08995 * 110.02943 * 95.75505 * 20 19 18 43 43 H 1.08999 * 110.03405 * 119.26051 * 21 20 19 44 44 H 1.09001 * 110.03705 * 240.64196 * 21 20 19 45 45 H 1.08997 * 110.48788 * 142.28685 * 22 21 20 46 46 H 1.09001 * 110.48482 * 264.93365 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0576 1.3181 5 7 2.1584 3.4288 1.3183 6 6 1.8276 4.1197 2.5718 7 6 2.3923 5.5412 2.5349 8 8 1.7368 6.2875 1.5076 9 6 2.1933 7.6364 1.3878 10 6 1.4380 8.3259 0.2811 11 1 0.6849 7.7878 -0.2755 12 6 1.7090 9.6435 -0.0217 13 7 2.6263 10.2986 0.6556 14 14 0.7731 10.4980 -1.3941 15 1 -0.4474 11.1358 -0.8384 16 1 1.6373 11.5365 -2.0106 17 1 0.3855 9.5011 -2.4243 18 6 1.9955 -0.7660 -1.1375 19 6 3.5225 -0.9884 -0.9956 20 6 3.8017 -2.2444 -1.8467 21 6 2.4763 -3.0211 -1.9338 22 6 1.4370 -2.2108 -1.1319 23 1 -0.3633 -1.0252 0.0709 24 1 -0.3633 0.5740 0.8524 25 1 -0.3633 0.4512 -0.9234 26 1 3.0797 1.3445 -0.1083 27 1 1.5611 1.9273 -0.8310 28 1 0.5472 2.0846 1.4264 29 1 2.0657 1.5016 2.1492 30 1 1.8211 3.9458 0.5202 31 1 0.7448 4.1614 2.6889 32 1 2.2633 3.5778 3.4112 33 1 2.2248 6.0238 3.4978 34 1 3.4620 5.5020 2.3295 35 1 2.0220 8.1627 2.3268 36 1 3.2589 7.6403 1.1583 37 1 2.8173 11.2254 0.4424 38 1 1.7643 -0.2661 -2.0781 39 1 3.7866 -1.1674 0.0466 40 1 4.0716 -0.1322 -1.3876 41 1 4.5637 -2.8587 -1.3671 42 1 4.1304 -1.9538 -2.8445 43 1 2.1613 -3.1068 -2.9738 44 1 2.5952 -4.0128 -1.4971 45 1 0.4646 -2.2457 -1.6231 46 1 1.3640 -2.5876 -0.1118 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385220013.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:29 Heat of formation + Delta-G solvation = -82.531737 kcal Electronic energy + Delta-G solvation = -20578.944922 eV Core-core repulsion = 17501.758103 eV Total energy + Delta-G solvation = -3077.186819 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.04533 -38.91047 -37.40145 -35.82268 -34.84338 -31.61420 -29.98496 -29.37925 -28.60591 -27.74073 -25.29881 -24.52545 -22.75390 -22.32995 -20.93859 -20.78567 -18.65330 -17.69557 -17.34499 -17.01893 -16.75714 -16.40272 -16.20365 -15.86576 -15.71361 -15.15405 -14.71209 -14.52845 -14.20733 -14.02121 -13.83883 -13.40204 -13.21807 -13.06660 -12.83839 -12.69546 -12.62498 -12.45096 -12.29324 -12.17365 -11.96517 -11.82393 -11.71656 -11.59868 -11.55871 -11.28846 -11.23396 -10.88454 -10.24352 -9.44006 -9.30543 -8.33263 -6.45869 1.38970 1.41901 1.53868 2.33495 2.70262 3.00521 3.20536 3.42224 3.63395 3.79296 3.97598 4.05387 4.10983 4.24167 4.35123 4.40384 4.44645 4.52754 4.55386 4.58803 4.59171 4.66217 4.75646 4.77545 4.81348 4.84153 4.91628 4.95548 4.97643 5.02012 5.05968 5.10683 5.17504 5.22573 5.29083 5.33185 5.49977 5.53241 5.94378 5.98698 6.10462 6.16823 6.35870 6.51890 6.80231 7.26043 8.79133 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.023770 B = 0.002724 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.668582 B =10278.307600 C =10739.741497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.536 5.536 3 C 0.063 3.937 4 C 0.071 3.929 5 N -0.697 5.697 6 C 0.078 3.922 7 C 0.054 3.946 8 O -0.409 6.409 9 C 0.211 3.789 10 C -0.548 4.548 11 H 0.062 0.938 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.984 3.016 15 H -0.268 1.268 16 H -0.274 1.274 17 H -0.264 1.264 18 C 0.073 3.927 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.111 4.111 23 H 0.083 0.917 24 H 0.069 0.931 25 H 0.019 0.981 26 H 0.079 0.921 27 H 0.021 0.979 28 H 0.030 0.970 29 H 0.082 0.918 30 H 0.342 0.658 31 H 0.033 0.967 32 H 0.105 0.895 33 H 0.050 0.950 34 H 0.043 0.957 35 H -0.014 1.014 36 H -0.015 1.015 37 H 0.271 0.729 38 H 0.037 0.963 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.635 -26.389 -2.357 26.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.260 5.260 3 C -0.066 4.066 4 C -0.058 4.058 5 N -0.329 5.329 6 C -0.051 4.051 7 C -0.023 4.023 8 O -0.329 6.329 9 C 0.136 3.864 10 C -0.586 4.586 11 H 0.080 0.920 12 C -0.193 4.193 13 N -0.570 5.570 14 Si 0.807 3.193 15 H -0.193 1.193 16 H -0.199 1.199 17 H -0.189 1.189 18 C -0.036 4.036 19 C -0.153 4.153 20 C -0.160 4.160 21 C -0.159 4.159 22 C -0.149 4.149 23 H 0.102 0.898 24 H 0.087 0.913 25 H 0.038 0.962 26 H 0.097 0.903 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.100 0.900 30 H 0.159 0.841 31 H 0.052 0.948 32 H 0.123 0.877 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.003 0.997 36 H 0.003 0.997 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.906 -26.725 -1.800 26.801 hybrid contribution -1.145 1.627 -1.084 2.266 sum -2.052 -25.098 -2.885 25.347 Atomic orbital electron populations 1.22497 0.87041 1.02966 1.00402 1.62039 1.08236 1.12771 1.42975 1.21947 1.00761 0.87991 0.95871 1.21867 0.97022 0.88495 0.98457 1.60419 1.64020 1.03402 1.05092 1.21890 0.98384 0.91450 0.93388 1.22617 0.96517 0.92232 0.90984 1.87748 1.63908 1.25484 1.55778 1.19794 0.93296 0.78080 0.95227 1.21384 1.21989 0.97098 1.18111 0.91991 1.25982 0.96201 0.97490 0.99673 1.70069 1.33161 1.11455 1.42291 0.85171 0.78204 0.77896 0.78060 1.19266 1.19914 1.18856 1.22743 0.95715 0.94428 0.90681 1.22382 0.94146 0.97965 1.00837 1.22095 0.97994 0.96003 0.99948 1.22093 0.94356 0.99073 1.00398 1.22382 0.98480 0.92948 1.01099 0.89846 0.91276 0.96200 0.90257 0.96051 0.95233 0.89957 0.84067 0.94846 0.87683 0.93176 0.93833 0.99674 0.99744 0.92019 0.94455 0.91102 0.92500 0.90966 0.91699 0.91430 0.90726 0.91439 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.08 127.69 1.16 1.50 16 2 N -0.54 -10.74 4.66 -889.31 -4.15 -14.88 16 3 C 0.06 1.45 5.12 86.30 0.44 1.89 16 4 C 0.07 1.72 5.62 86.30 0.48 2.20 16 5 N -0.70 -20.95 6.50 -513.89 -3.34 -24.29 16 6 C 0.08 2.33 6.11 86.30 0.53 2.86 16 7 C 0.05 2.04 6.28 71.98 0.45 2.49 16 8 O -0.41 -20.09 9.85 -148.98 -1.47 -21.55 16 9 C 0.21 12.06 5.69 71.23 0.41 12.46 16 10 C -0.55 -32.98 9.43 25.60 0.24 -32.74 16 11 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 12 C 0.01 0.29 5.46 84.66 0.46 0.76 16 13 N -0.93 -56.51 13.29 21.45 0.28 -56.22 16 14 Si 0.98 44.63 29.54 68.60 2.03 46.66 16 15 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 18 C 0.07 1.31 2.58 46.24 0.12 1.42 16 19 C -0.12 -1.97 5.50 31.70 0.17 -1.80 16 20 C -0.12 -1.64 6.80 31.32 0.21 -1.43 16 21 C -0.12 -1.46 6.80 31.32 0.21 -1.24 16 22 C -0.11 -1.57 4.99 31.67 0.16 -1.41 16 23 H 0.08 1.23 6.93 -2.39 -0.02 1.21 16 24 H 0.07 1.25 6.30 -2.39 -0.02 1.24 16 25 H 0.02 0.37 8.14 -2.38 -0.02 0.35 16 26 H 0.08 1.92 6.86 -2.39 -0.02 1.90 16 27 H 0.02 0.54 8.12 -2.38 -0.02 0.52 16 28 H 0.03 0.71 6.47 -2.39 -0.02 0.69 16 29 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.34 11.66 8.29 -89.69 -0.74 10.91 16 31 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 35 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 36 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 37 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 1.04 7.76 -2.39 -0.02 1.02 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 0.87 7.97 -2.39 -0.02 0.85 16 46 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -64.82 361.56 -1.42 -66.24 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.17 Total: 17.08 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 5.05 Total: -13.03 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -7.20 Total: -95.39 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -1.47 Total: -21.55 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -64.82 -1.42 -66.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385220013.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.288 kcal (2) G-P(sol) polarization free energy of solvation -64.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds