Wall clock time and date at job start Mon Mar 30 2020 04:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47055 * 2 1 4 4 C 1.46897 * 111.00245 * 287.71356 * 3 2 1 5 5 C 1.52991 * 109.47106 * 158.33749 * 4 3 2 6 6 O 1.42900 * 109.47200 * 67.51005 * 5 4 3 7 7 C 1.42905 * 114.00098 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47193 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99635 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99900 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00192 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99917 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.46897 * 60.00139 * 12 10 8 14 14 H 1.48503 * 109.47211 * 179.97438 * 12 10 8 15 15 H 1.48492 * 109.47324 * 300.00285 * 12 10 8 16 16 C 1.46901 * 110.99346 * 163.76286 * 3 2 1 17 17 C 1.53002 * 109.47291 * 291.97633 * 16 3 2 18 18 H 1.09006 * 109.46134 * 65.00615 * 17 16 3 19 19 C 1.53039 * 109.46606 * 184.97952 * 17 16 3 20 20 C 1.53114 * 109.28186 * 179.19608 * 19 17 16 21 21 C 1.53116 * 109.15897 * 302.35184 * 20 19 17 22 22 C 1.53039 * 109.28511 * 57.65123 * 21 20 19 23 23 N 1.46842 * 109.46560 * 305.02851 * 17 16 3 24 24 H 1.09001 * 109.47217 * 307.97603 * 1 2 3 25 25 H 1.09000 * 109.47038 * 67.97114 * 1 2 3 26 26 H 1.08992 * 109.47838 * 187.97172 * 1 2 3 27 27 H 1.09004 * 109.46781 * 240.00111 * 2 1 3 28 28 H 1.09000 * 109.46889 * 120.00781 * 2 1 3 29 29 H 1.09003 * 109.47002 * 278.33834 * 4 3 2 30 30 H 1.09000 * 109.46973 * 38.33815 * 4 3 2 31 31 H 1.08997 * 109.47265 * 187.50737 * 5 4 3 32 32 H 1.08999 * 109.47037 * 307.51225 * 5 4 3 33 33 H 1.09007 * 109.46845 * 299.99652 * 7 6 5 34 34 H 1.08997 * 109.47452 * 59.99473 * 7 6 5 35 35 H 0.96999 * 120.00073 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.47895 * 51.98195 * 16 3 2 37 37 H 1.09007 * 109.47237 * 171.98133 * 16 3 2 38 38 H 1.09004 * 109.50163 * 299.14622 * 19 17 16 39 39 H 1.09006 * 109.50019 * 59.25638 * 19 17 16 40 40 H 1.09001 * 109.51874 * 62.25126 * 20 19 17 41 41 H 1.08998 * 109.52355 * 182.37945 * 20 19 17 42 42 H 1.09008 * 109.50118 * 177.59229 * 21 20 19 43 43 H 1.09001 * 109.50235 * 297.70905 * 21 20 19 44 44 H 1.09005 * 109.45886 * 60.83117 * 22 21 20 45 45 H 1.08990 * 109.46616 * 180.81041 * 22 21 20 46 46 H 1.00906 * 110.99483 * 302.33992 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8018 2.0205 -1.3064 5 6 1.8029 3.5413 -1.1402 6 8 3.1137 3.9799 -0.7777 7 6 3.2244 5.3931 -0.5963 8 6 4.6408 5.7416 -0.2177 9 1 5.3822 4.9618 -0.1244 10 6 4.9901 7.0558 0.0096 11 7 4.0872 8.0053 -0.1035 12 14 6.7457 7.4877 0.4797 13 1 7.6683 7.0528 -0.5996 14 1 6.8610 8.9564 0.6668 15 1 7.1035 6.7974 1.7448 16 6 3.4366 1.4423 0.3835 17 6 3.5830 1.0498 1.8550 18 1 3.2913 0.0074 1.9836 19 6 5.0399 1.2287 2.2881 20 6 5.1776 0.8540 3.7663 21 6 4.2308 1.7257 4.5960 22 6 2.7974 1.5323 4.0961 23 7 2.7180 1.9048 2.6779 24 1 -0.3634 0.6324 0.8101 25 1 -0.3633 0.3855 -0.9526 26 1 -0.3634 -1.0176 0.1425 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5140 0.8899 29 1 2.5994 1.7290 -1.9897 30 1 0.8416 1.6999 -1.7107 31 1 1.5100 4.0097 -2.0798 32 1 1.0968 3.8219 -0.3587 33 1 2.9608 5.9002 -1.5245 34 1 2.5478 5.7118 0.1966 35 1 4.3330 8.9299 0.0561 36 1 4.0089 0.7513 -0.2355 37 1 3.8115 2.4555 0.2388 38 1 5.6800 0.5824 1.6875 39 1 5.3364 2.2681 2.1470 40 1 4.9184 -0.1961 3.9015 41 1 6.2050 1.0203 4.0900 42 1 4.2930 1.4343 5.6445 43 1 4.5146 2.7728 4.4912 44 1 2.5095 0.4876 4.2139 45 1 2.1226 2.1625 4.6753 46 1 2.9432 2.8796 2.5468 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385223916.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:35 Heat of formation + Delta-G solvation = -58.904104 kcal Electronic energy + Delta-G solvation = -22381.511496 eV Core-core repulsion = 19305.349248 eV Total energy + Delta-G solvation = -3076.162248 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.07194 -37.45909 -35.95830 -32.72356 -31.95358 -31.32339 -30.66558 -28.42248 -26.83496 -24.84628 -23.06868 -22.56178 -22.27559 -21.27258 -20.13723 -19.84614 -16.41028 -15.95408 -15.53013 -15.19893 -15.06420 -14.75669 -14.53723 -14.38267 -14.11830 -13.86450 -13.55043 -13.13887 -12.70662 -12.42690 -12.20474 -11.96983 -11.75485 -11.66202 -11.55003 -11.25067 -11.13131 -10.98875 -10.84897 -10.81546 -10.68533 -10.63560 -10.49666 -10.29240 -10.11719 -9.72967 -9.05183 -8.74106 -8.08982 -7.87115 -7.77689 -6.09103 -4.10676 3.30797 3.34453 3.37353 4.19402 4.35398 4.62322 4.90374 4.98069 5.01599 5.13877 5.23364 5.27352 5.30464 5.43242 5.46890 5.55567 5.60975 5.69687 5.72619 5.78834 5.86439 5.92387 5.99308 6.02880 6.05818 6.12204 6.15326 6.20598 6.21297 6.26124 6.27963 6.44058 6.49774 6.53106 6.84444 7.20264 7.39857 7.49757 7.58701 7.64857 7.80153 7.86657 8.19624 8.64102 9.03253 9.54126 11.02289 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.006364 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.823140 B = 4398.666563 C = 5847.019652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 N -0.510 5.510 4 C 0.058 3.942 5 C 0.070 3.930 6 O -0.393 6.393 7 C 0.197 3.803 8 C -0.512 4.512 9 H 0.063 0.937 10 C 0.058 3.942 11 N -0.897 5.897 12 Si 0.904 3.096 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.049 3.951 17 C 0.100 3.900 18 H 0.066 0.934 19 C -0.157 4.157 20 C -0.114 4.114 21 C -0.161 4.161 22 C 0.059 3.941 23 N -0.659 5.659 24 H 0.067 0.933 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.020 0.980 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.048 0.952 33 H 0.001 0.999 34 H 0.006 0.994 35 H 0.264 0.736 36 H 0.024 0.976 37 H 0.119 0.881 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.476 -15.687 4.425 16.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 N -0.234 5.234 4 C -0.070 4.070 5 C -0.008 4.008 6 O -0.313 6.313 7 C 0.123 3.877 8 C -0.550 4.550 9 H 0.081 0.919 10 C -0.143 4.143 11 N -0.536 5.536 12 Si 0.731 3.269 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.201 1.201 16 C -0.079 4.079 17 C -0.011 4.011 18 H 0.085 0.915 19 C -0.197 4.197 20 C -0.152 4.152 21 C -0.201 4.201 22 C -0.071 4.071 23 N -0.289 5.289 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.038 0.962 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.019 0.981 34 H 0.023 0.977 35 H 0.073 0.927 36 H 0.042 0.958 37 H 0.137 0.863 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.206 -15.714 4.679 16.926 hybrid contribution 2.106 0.425 -0.151 2.154 sum -2.100 -15.288 4.527 16.082 Atomic orbital electron populations 1.21750 0.95439 1.00786 1.02144 1.22054 0.95838 0.90089 0.99707 1.61892 1.18383 1.15404 1.27696 1.22184 1.00215 0.94512 0.90128 1.22250 0.87706 0.92803 0.98036 1.87726 1.27112 1.26633 1.89835 1.20139 0.97264 0.75361 0.94983 1.20986 0.94691 0.92526 1.46826 0.91889 1.24914 0.97874 0.95997 0.95550 1.69950 1.33677 1.00512 1.49502 0.86474 0.84196 0.77156 0.79083 1.20126 1.21189 1.20126 1.22536 0.87791 1.04461 0.93117 1.21496 0.89386 0.96985 0.93200 0.91543 1.22297 0.98657 1.02813 0.95884 1.21495 0.99174 0.99179 0.95358 1.22313 0.97812 1.00565 0.99370 1.21982 0.94238 1.00990 0.89887 1.60520 1.55321 1.08415 1.04615 0.91396 0.93349 0.93264 0.96157 0.91170 0.94669 0.90634 0.94761 0.93416 0.98098 0.97656 0.92662 0.95832 0.86280 0.92027 0.90928 0.92546 0.92424 0.92222 0.91698 0.91863 0.91175 0.83062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.85 37.16 0.37 -1.27 16 2 C 0.05 0.65 5.53 -3.82 -0.02 0.63 16 3 N -0.51 -7.76 4.09 -234.63 -0.96 -8.72 16 4 C 0.06 0.90 5.37 -3.83 -0.02 0.88 16 5 C 0.07 1.31 6.25 37.15 0.23 1.55 16 6 O -0.39 -9.05 7.52 -35.23 -0.26 -9.31 16 7 C 0.20 5.28 5.69 36.01 0.20 5.49 16 8 C -0.51 -14.66 9.43 -34.44 -0.32 -14.99 16 9 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 11 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 12 Si 0.90 21.65 29.54 -169.99 -5.02 16.62 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 C 0.05 0.78 4.40 -3.82 -0.02 0.76 16 17 C 0.10 1.41 2.29 -67.72 -0.16 1.26 16 18 H 0.07 0.90 6.56 -51.93 -0.34 0.56 16 19 C -0.16 -2.14 5.36 -26.65 -0.14 -2.28 16 20 C -0.11 -1.37 6.00 -26.61 -0.16 -1.52 16 21 C -0.16 -1.93 6.08 -26.65 -0.16 -2.09 16 22 C 0.06 0.74 6.56 -3.84 -0.03 0.71 16 23 N -0.66 -9.72 6.23 -106.76 -0.66 -10.38 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.53 6.81 -51.93 -0.35 0.18 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.02 0.25 8.05 -51.93 -0.42 -0.17 16 28 H 0.07 0.88 6.13 -51.93 -0.32 0.57 16 29 H 0.04 0.57 7.97 -51.93 -0.41 0.15 16 30 H 0.08 1.01 6.36 -51.93 -0.33 0.68 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 34 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 37 H 0.12 2.34 5.16 -51.93 -0.27 2.07 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.35 5.93 8.79 -39.29 -0.35 5.59 16 LS Contribution 354.29 15.07 5.34 5.34 Total: -1.00 -28.96 354.29 -9.83 -38.79 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -8.67 Total: 2.93 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -0.32 Total: -9.32 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.89 Total: -45.04 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.26 Total: -9.31 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.96 -9.83 -38.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385223916.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.118 kcal (2) G-P(sol) polarization free energy of solvation -28.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds