Wall clock time and date at job start Mon Mar 30 2020 04:52:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46901 * 109.47055 * 2 1
4 4 C 1.46897 * 111.00245 * 287.71356 * 3 2 1
5 5 C 1.52991 * 109.47106 * 158.33749 * 4 3 2
6 6 O 1.42900 * 109.47200 * 67.51005 * 5 4 3
7 7 C 1.42905 * 114.00098 * 180.02562 * 6 5 4
8 8 C 1.50703 * 109.47193 * 179.97438 * 7 6 5
9 9 H 1.08001 * 119.99635 * 359.97438 * 8 7 6
10 10 C 1.37873 * 119.99900 * 179.97438 * 8 7 6
11 11 N 1.31513 * 120.00192 * 0.02562 * 10 8 7
12 12 Si 1.86799 * 119.99917 * 179.97438 * 10 8 7
13 13 H 1.48508 * 109.46897 * 60.00139 * 12 10 8
14 14 H 1.48503 * 109.47211 * 179.97438 * 12 10 8
15 15 H 1.48492 * 109.47324 * 300.00285 * 12 10 8
16 16 C 1.46901 * 110.99346 * 163.76286 * 3 2 1
17 17 C 1.53002 * 109.47291 * 291.97633 * 16 3 2
18 18 H 1.09006 * 109.46134 * 65.00615 * 17 16 3
19 19 C 1.53039 * 109.46606 * 184.97952 * 17 16 3
20 20 C 1.53114 * 109.28186 * 179.19608 * 19 17 16
21 21 C 1.53116 * 109.15897 * 302.35184 * 20 19 17
22 22 C 1.53039 * 109.28511 * 57.65123 * 21 20 19
23 23 N 1.46842 * 109.46560 * 305.02851 * 17 16 3
24 24 H 1.09001 * 109.47217 * 307.97603 * 1 2 3
25 25 H 1.09000 * 109.47038 * 67.97114 * 1 2 3
26 26 H 1.08992 * 109.47838 * 187.97172 * 1 2 3
27 27 H 1.09004 * 109.46781 * 240.00111 * 2 1 3
28 28 H 1.09000 * 109.46889 * 120.00781 * 2 1 3
29 29 H 1.09003 * 109.47002 * 278.33834 * 4 3 2
30 30 H 1.09000 * 109.46973 * 38.33815 * 4 3 2
31 31 H 1.08997 * 109.47265 * 187.50737 * 5 4 3
32 32 H 1.08999 * 109.47037 * 307.51225 * 5 4 3
33 33 H 1.09007 * 109.46845 * 299.99652 * 7 6 5
34 34 H 1.08997 * 109.47452 * 59.99473 * 7 6 5
35 35 H 0.96999 * 120.00073 * 180.02562 * 11 10 8
36 36 H 1.09001 * 109.47895 * 51.98195 * 16 3 2
37 37 H 1.09007 * 109.47237 * 171.98133 * 16 3 2
38 38 H 1.09004 * 109.50163 * 299.14622 * 19 17 16
39 39 H 1.09006 * 109.50019 * 59.25638 * 19 17 16
40 40 H 1.09001 * 109.51874 * 62.25126 * 20 19 17
41 41 H 1.08998 * 109.52355 * 182.37945 * 20 19 17
42 42 H 1.09008 * 109.50118 * 177.59229 * 21 20 19
43 43 H 1.09001 * 109.50235 * 297.70905 * 21 20 19
44 44 H 1.09005 * 109.45886 * 60.83117 * 22 21 20
45 45 H 1.08990 * 109.46616 * 180.81041 * 22 21 20
46 46 H 1.00906 * 110.99483 * 302.33992 * 23 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.8018 2.0205 -1.3064
5 6 1.8029 3.5413 -1.1402
6 8 3.1137 3.9799 -0.7777
7 6 3.2244 5.3931 -0.5963
8 6 4.6408 5.7416 -0.2177
9 1 5.3822 4.9618 -0.1244
10 6 4.9901 7.0558 0.0096
11 7 4.0872 8.0053 -0.1035
12 14 6.7457 7.4877 0.4797
13 1 7.6683 7.0528 -0.5996
14 1 6.8610 8.9564 0.6668
15 1 7.1035 6.7974 1.7448
16 6 3.4366 1.4423 0.3835
17 6 3.5830 1.0498 1.8550
18 1 3.2913 0.0074 1.9836
19 6 5.0399 1.2287 2.2881
20 6 5.1776 0.8540 3.7663
21 6 4.2308 1.7257 4.5960
22 6 2.7974 1.5323 4.0961
23 7 2.7180 1.9048 2.6779
24 1 -0.3634 0.6324 0.8101
25 1 -0.3633 0.3855 -0.9526
26 1 -0.3634 -1.0176 0.1425
27 1 1.8933 -0.5138 -0.8900
28 1 1.8933 -0.5140 0.8899
29 1 2.5994 1.7290 -1.9897
30 1 0.8416 1.6999 -1.7107
31 1 1.5100 4.0097 -2.0798
32 1 1.0968 3.8219 -0.3587
33 1 2.9608 5.9002 -1.5245
34 1 2.5478 5.7118 0.1966
35 1 4.3330 8.9299 0.0561
36 1 4.0089 0.7513 -0.2355
37 1 3.8115 2.4555 0.2388
38 1 5.6800 0.5824 1.6875
39 1 5.3364 2.2681 2.1470
40 1 4.9184 -0.1961 3.9015
41 1 6.2050 1.0203 4.0900
42 1 4.2930 1.4343 5.6445
43 1 4.5146 2.7728 4.4912
44 1 2.5095 0.4876 4.2139
45 1 2.1226 2.1625 4.6753
46 1 2.9432 2.8796 2.5468
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385223916.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:52:35
Heat of formation + Delta-G solvation = -58.904104 kcal
Electronic energy + Delta-G solvation = -22381.511496 eV
Core-core repulsion = 19305.349248 eV
Total energy + Delta-G solvation = -3076.162248 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-39.07194 -37.45909 -35.95830 -32.72356 -31.95358 -31.32339 -30.66558 -28.42248
-26.83496 -24.84628 -23.06868 -22.56178 -22.27559 -21.27258 -20.13723 -19.84614
-16.41028 -15.95408 -15.53013 -15.19893 -15.06420 -14.75669 -14.53723 -14.38267
-14.11830 -13.86450 -13.55043 -13.13887 -12.70662 -12.42690 -12.20474 -11.96983
-11.75485 -11.66202 -11.55003 -11.25067 -11.13131 -10.98875 -10.84897 -10.81546
-10.68533 -10.63560 -10.49666 -10.29240 -10.11719 -9.72967 -9.05183 -8.74106
-8.08982 -7.87115 -7.77689 -6.09103 -4.10676 3.30797 3.34453 3.37353
4.19402 4.35398 4.62322 4.90374 4.98069 5.01599 5.13877 5.23364
5.27352 5.30464 5.43242 5.46890 5.55567 5.60975 5.69687 5.72619
5.78834 5.86439 5.92387 5.99308 6.02880 6.05818 6.12204 6.15326
6.20598 6.21297 6.26124 6.27963 6.44058 6.49774 6.53106 6.84444
7.20264 7.39857 7.49757 7.58701 7.64857 7.80153 7.86657 8.19624
8.64102 9.03253 9.54126 11.02289
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.013710 B = 0.006364 C = 0.004788
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2041.823140 B = 4398.666563 C = 5847.019652
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.051 3.949
3 N -0.510 5.510
4 C 0.058 3.942
5 C 0.070 3.930
6 O -0.393 6.393
7 C 0.197 3.803
8 C -0.512 4.512
9 H 0.063 0.937
10 C 0.058 3.942
11 N -0.897 5.897
12 Si 0.904 3.096
13 H -0.276 1.276
14 H -0.286 1.286
15 H -0.276 1.276
16 C 0.049 3.951
17 C 0.100 3.900
18 H 0.066 0.934
19 C -0.157 4.157
20 C -0.114 4.114
21 C -0.161 4.161
22 C 0.059 3.941
23 N -0.659 5.659
24 H 0.067 0.933
25 H 0.047 0.953
26 H 0.048 0.952
27 H 0.020 0.980
28 H 0.070 0.930
29 H 0.035 0.965
30 H 0.075 0.925
31 H 0.034 0.966
32 H 0.048 0.952
33 H 0.001 0.999
34 H 0.006 0.994
35 H 0.264 0.736
36 H 0.024 0.976
37 H 0.119 0.881
38 H 0.061 0.939
39 H 0.072 0.928
40 H 0.056 0.944
41 H 0.057 0.943
42 H 0.059 0.941
43 H 0.064 0.936
44 H 0.063 0.937
45 H 0.070 0.930
46 H 0.350 0.650
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.476 -15.687 4.425 16.666
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.077 4.077
3 N -0.234 5.234
4 C -0.070 4.070
5 C -0.008 4.008
6 O -0.313 6.313
7 C 0.123 3.877
8 C -0.550 4.550
9 H 0.081 0.919
10 C -0.143 4.143
11 N -0.536 5.536
12 Si 0.731 3.269
13 H -0.201 1.201
14 H -0.212 1.212
15 H -0.201 1.201
16 C -0.079 4.079
17 C -0.011 4.011
18 H 0.085 0.915
19 C -0.197 4.197
20 C -0.152 4.152
21 C -0.201 4.201
22 C -0.071 4.071
23 N -0.289 5.289
24 H 0.086 0.914
25 H 0.067 0.933
26 H 0.067 0.933
27 H 0.038 0.962
28 H 0.088 0.912
29 H 0.053 0.947
30 H 0.094 0.906
31 H 0.052 0.948
32 H 0.066 0.934
33 H 0.019 0.981
34 H 0.023 0.977
35 H 0.073 0.927
36 H 0.042 0.958
37 H 0.137 0.863
38 H 0.080 0.920
39 H 0.091 0.909
40 H 0.075 0.925
41 H 0.076 0.924
42 H 0.078 0.922
43 H 0.083 0.917
44 H 0.081 0.919
45 H 0.088 0.912
46 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges -4.206 -15.714 4.679 16.926
hybrid contribution 2.106 0.425 -0.151 2.154
sum -2.100 -15.288 4.527 16.082
Atomic orbital electron populations
1.21750 0.95439 1.00786 1.02144 1.22054 0.95838 0.90089 0.99707
1.61892 1.18383 1.15404 1.27696 1.22184 1.00215 0.94512 0.90128
1.22250 0.87706 0.92803 0.98036 1.87726 1.27112 1.26633 1.89835
1.20139 0.97264 0.75361 0.94983 1.20986 0.94691 0.92526 1.46826
0.91889 1.24914 0.97874 0.95997 0.95550 1.69950 1.33677 1.00512
1.49502 0.86474 0.84196 0.77156 0.79083 1.20126 1.21189 1.20126
1.22536 0.87791 1.04461 0.93117 1.21496 0.89386 0.96985 0.93200
0.91543 1.22297 0.98657 1.02813 0.95884 1.21495 0.99174 0.99179
0.95358 1.22313 0.97812 1.00565 0.99370 1.21982 0.94238 1.00990
0.89887 1.60520 1.55321 1.08415 1.04615 0.91396 0.93349 0.93264
0.96157 0.91170 0.94669 0.90634 0.94761 0.93416 0.98098 0.97656
0.92662 0.95832 0.86280 0.92027 0.90928 0.92546 0.92424 0.92222
0.91698 0.91863 0.91175 0.83062
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.63 9.85 37.16 0.37 -1.27 16
2 C 0.05 0.65 5.53 -3.82 -0.02 0.63 16
3 N -0.51 -7.76 4.09 -234.63 -0.96 -8.72 16
4 C 0.06 0.90 5.37 -3.83 -0.02 0.88 16
5 C 0.07 1.31 6.25 37.15 0.23 1.55 16
6 O -0.39 -9.05 7.52 -35.23 -0.26 -9.31 16
7 C 0.20 5.28 5.69 36.01 0.20 5.49 16
8 C -0.51 -14.66 9.43 -34.44 -0.32 -14.99 16
9 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16
10 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
11 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16
12 Si 0.90 21.65 29.54 -169.99 -5.02 16.62 16
13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16
16 C 0.05 0.78 4.40 -3.82 -0.02 0.76 16
17 C 0.10 1.41 2.29 -67.72 -0.16 1.26 16
18 H 0.07 0.90 6.56 -51.93 -0.34 0.56 16
19 C -0.16 -2.14 5.36 -26.65 -0.14 -2.28 16
20 C -0.11 -1.37 6.00 -26.61 -0.16 -1.52 16
21 C -0.16 -1.93 6.08 -26.65 -0.16 -2.09 16
22 C 0.06 0.74 6.56 -3.84 -0.03 0.71 16
23 N -0.66 -9.72 6.23 -106.76 -0.66 -10.38 16
24 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16
25 H 0.05 0.53 6.81 -51.93 -0.35 0.18 16
26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
27 H 0.02 0.25 8.05 -51.93 -0.42 -0.17 16
28 H 0.07 0.88 6.13 -51.93 -0.32 0.57 16
29 H 0.04 0.57 7.97 -51.93 -0.41 0.15 16
30 H 0.08 1.01 6.36 -51.93 -0.33 0.68 16
31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16
32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16
33 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16
34 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16
35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
36 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16
37 H 0.12 2.34 5.16 -51.93 -0.27 2.07 16
38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
42 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16
43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16
44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16
45 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
46 H 0.35 5.93 8.79 -39.29 -0.35 5.59 16
LS Contribution 354.29 15.07 5.34 5.34
Total: -1.00 -28.96 354.29 -9.83 -38.79
By element:
Atomic # 1 Polarization: 11.60 SS G_CDS: -8.67 Total: 2.93 kcal
Atomic # 6 Polarization: -9.00 SS G_CDS: -0.32 Total: -9.32 kcal
Atomic # 7 Polarization: -44.16 SS G_CDS: -0.89 Total: -45.04 kcal
Atomic # 8 Polarization: -9.05 SS G_CDS: -0.26 Total: -9.31 kcal
Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal
Total LS contribution 5.34 Total: 5.34 kcal
Total: -28.96 -9.83 -38.79 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385223916.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.118 kcal
(2) G-P(sol) polarization free energy of solvation -28.957 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.075 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.786 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.904 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds