Wall clock time and date at job start Mon Mar 30 2020 04:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47055 * 2 1 4 4 C 1.46897 * 111.00245 * 287.71356 * 3 2 1 5 5 C 1.52991 * 109.47106 * 158.33749 * 4 3 2 6 6 O 1.42900 * 109.47200 * 67.51005 * 5 4 3 7 7 C 1.42905 * 114.00098 * 180.02562 * 6 5 4 8 8 C 1.50703 * 109.47193 * 179.97438 * 7 6 5 9 9 H 1.08001 * 119.99635 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99900 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00192 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 119.99917 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.46897 * 60.00139 * 12 10 8 14 14 H 1.48503 * 109.47211 * 179.97438 * 12 10 8 15 15 H 1.48492 * 109.47324 * 300.00285 * 12 10 8 16 16 C 1.46901 * 110.99346 * 163.76286 * 3 2 1 17 17 C 1.53002 * 109.47291 * 291.97633 * 16 3 2 18 18 H 1.09006 * 109.46134 * 65.00615 * 17 16 3 19 19 C 1.53039 * 109.46606 * 184.97952 * 17 16 3 20 20 C 1.53114 * 109.28186 * 179.19608 * 19 17 16 21 21 C 1.53116 * 109.15897 * 302.35184 * 20 19 17 22 22 C 1.53039 * 109.28511 * 57.65123 * 21 20 19 23 23 N 1.46842 * 109.46560 * 305.02851 * 17 16 3 24 24 H 1.09001 * 109.47217 * 307.97603 * 1 2 3 25 25 H 1.09000 * 109.47038 * 67.97114 * 1 2 3 26 26 H 1.08992 * 109.47838 * 187.97172 * 1 2 3 27 27 H 1.09004 * 109.46781 * 240.00111 * 2 1 3 28 28 H 1.09000 * 109.46889 * 120.00781 * 2 1 3 29 29 H 1.09003 * 109.47002 * 278.33834 * 4 3 2 30 30 H 1.09000 * 109.46973 * 38.33815 * 4 3 2 31 31 H 1.08997 * 109.47265 * 187.50737 * 5 4 3 32 32 H 1.08999 * 109.47037 * 307.51225 * 5 4 3 33 33 H 1.09007 * 109.46845 * 299.99652 * 7 6 5 34 34 H 1.08997 * 109.47452 * 59.99473 * 7 6 5 35 35 H 0.96999 * 120.00073 * 180.02562 * 11 10 8 36 36 H 1.09001 * 109.47895 * 51.98195 * 16 3 2 37 37 H 1.09007 * 109.47237 * 171.98133 * 16 3 2 38 38 H 1.09004 * 109.50163 * 299.14622 * 19 17 16 39 39 H 1.09006 * 109.50019 * 59.25638 * 19 17 16 40 40 H 1.09001 * 109.51874 * 62.25126 * 20 19 17 41 41 H 1.08998 * 109.52355 * 182.37945 * 20 19 17 42 42 H 1.09008 * 109.50118 * 177.59229 * 21 20 19 43 43 H 1.09001 * 109.50235 * 297.70905 * 21 20 19 44 44 H 1.09005 * 109.45886 * 60.83117 * 22 21 20 45 45 H 1.08990 * 109.46616 * 180.81041 * 22 21 20 46 46 H 1.00906 * 110.99483 * 302.33992 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8018 2.0205 -1.3064 5 6 1.8029 3.5413 -1.1402 6 8 3.1137 3.9799 -0.7777 7 6 3.2244 5.3931 -0.5963 8 6 4.6408 5.7416 -0.2177 9 1 5.3822 4.9618 -0.1244 10 6 4.9901 7.0558 0.0096 11 7 4.0872 8.0053 -0.1035 12 14 6.7457 7.4877 0.4797 13 1 7.6683 7.0528 -0.5996 14 1 6.8610 8.9564 0.6668 15 1 7.1035 6.7974 1.7448 16 6 3.4366 1.4423 0.3835 17 6 3.5830 1.0498 1.8550 18 1 3.2913 0.0074 1.9836 19 6 5.0399 1.2287 2.2881 20 6 5.1776 0.8540 3.7663 21 6 4.2308 1.7257 4.5960 22 6 2.7974 1.5323 4.0961 23 7 2.7180 1.9048 2.6779 24 1 -0.3634 0.6324 0.8101 25 1 -0.3633 0.3855 -0.9526 26 1 -0.3634 -1.0176 0.1425 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5140 0.8899 29 1 2.5994 1.7290 -1.9897 30 1 0.8416 1.6999 -1.7107 31 1 1.5100 4.0097 -2.0798 32 1 1.0968 3.8219 -0.3587 33 1 2.9608 5.9002 -1.5245 34 1 2.5478 5.7118 0.1966 35 1 4.3330 8.9299 0.0561 36 1 4.0089 0.7513 -0.2355 37 1 3.8115 2.4555 0.2388 38 1 5.6800 0.5824 1.6875 39 1 5.3364 2.2681 2.1470 40 1 4.9184 -0.1961 3.9015 41 1 6.2050 1.0203 4.0900 42 1 4.2930 1.4343 5.6445 43 1 4.5146 2.7728 4.4912 44 1 2.5095 0.4876 4.2139 45 1 2.1226 2.1625 4.6753 46 1 2.9432 2.8796 2.5468 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385223916.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:35 Heat of formation + Delta-G solvation = -77.907949 kcal Electronic energy + Delta-G solvation = -22382.335565 eV Core-core repulsion = 19305.349248 eV Total energy + Delta-G solvation = -3076.986317 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.23418 -38.87122 -37.52419 -34.88609 -33.02821 -32.39883 -31.96157 -29.86819 -28.75174 -26.07785 -24.45995 -24.09467 -23.74235 -22.49499 -21.24082 -21.00740 -18.59208 -17.51008 -16.97140 -16.67116 -16.36606 -16.16760 -16.00219 -15.54568 -15.41154 -15.11277 -14.93428 -14.64578 -13.98905 -13.70467 -13.60823 -13.34810 -13.04431 -12.99160 -12.90152 -12.68345 -12.62568 -12.38861 -12.34619 -12.26656 -12.06839 -11.98811 -11.70201 -11.55872 -11.35438 -11.29329 -11.01212 -10.77596 -10.08690 -9.01873 -8.96604 -8.29352 -6.40629 1.38405 1.42300 1.50593 2.34308 3.01126 3.04665 3.27819 3.49311 3.85335 3.96531 4.09242 4.18410 4.23859 4.30375 4.37683 4.42999 4.46145 4.53590 4.62901 4.68028 4.71182 4.77472 4.82868 4.87129 4.89674 4.95199 5.00380 5.04601 5.11661 5.13991 5.17596 5.20843 5.24012 5.27309 5.41601 5.48149 5.53100 5.57128 6.01011 6.23811 6.39203 6.49464 6.57117 6.60265 6.88694 7.31146 8.82797 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.006364 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.823140 B = 4398.666563 C = 5847.019652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.053 3.947 3 N -0.520 5.520 4 C 0.067 3.933 5 C 0.063 3.937 6 O -0.394 6.394 7 C 0.213 3.787 8 C -0.537 4.537 9 H 0.060 0.940 10 C 0.009 3.991 11 N -0.931 5.931 12 Si 0.976 3.024 13 H -0.267 1.267 14 H -0.277 1.277 15 H -0.267 1.267 16 C 0.054 3.946 17 C 0.108 3.892 18 H 0.082 0.918 19 C -0.154 4.154 20 C -0.110 4.110 21 C -0.158 4.158 22 C 0.061 3.939 23 N -0.669 5.669 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.030 0.970 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.104 0.896 31 H 0.040 0.960 32 H 0.040 0.960 33 H -0.021 1.021 34 H -0.018 1.018 35 H 0.269 0.731 36 H 0.027 0.973 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.040 0.960 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.043 0.957 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.999 -17.624 5.115 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.075 4.075 3 N -0.245 5.245 4 C -0.061 4.061 5 C -0.014 4.014 6 O -0.314 6.314 7 C 0.138 3.862 8 C -0.575 4.575 9 H 0.078 0.922 10 C -0.190 4.190 11 N -0.570 5.570 12 Si 0.799 3.201 13 H -0.191 1.191 14 H -0.202 1.202 15 H -0.192 1.192 16 C -0.075 4.075 17 C -0.002 4.002 18 H 0.100 0.900 19 C -0.194 4.194 20 C -0.148 4.148 21 C -0.197 4.197 22 C -0.069 4.069 23 N -0.297 5.297 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.122 0.878 31 H 0.058 0.942 32 H 0.058 0.942 33 H -0.003 1.003 34 H -0.001 1.001 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.745 -17.685 5.369 18.858 hybrid contribution 1.863 0.982 -0.390 2.142 sum -1.882 -16.704 4.979 17.531 Atomic orbital electron populations 1.21703 0.94213 1.01861 1.01745 1.22115 0.96727 0.88328 1.00318 1.61870 1.17888 1.17369 1.27332 1.22116 1.01600 0.91870 0.90528 1.22523 0.85615 0.95395 0.97851 1.87767 1.29646 1.24081 1.89944 1.19719 0.96248 0.77355 0.92853 1.21282 0.95372 0.93108 1.47757 0.92171 1.25870 1.02645 0.95587 0.94878 1.70068 1.36033 1.01039 1.49874 0.85346 0.78347 0.77261 0.79143 1.19146 1.20165 1.19163 1.22376 0.88312 1.02086 0.94684 1.21428 0.89591 0.97330 0.91889 0.90017 1.22255 0.98489 1.01045 0.97636 1.21483 0.99518 1.00060 0.93704 1.22265 0.97397 0.99406 1.00624 1.22035 0.94674 1.01739 0.88460 1.60548 1.55583 1.07284 1.06254 0.92900 0.92971 0.91098 0.95226 0.90760 0.95026 0.87783 0.94167 0.94218 1.00348 1.00052 0.92214 0.95464 0.90297 0.91205 0.94084 0.90732 0.91915 0.90169 0.93805 0.90419 0.91009 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.85 71.98 0.71 -2.07 16 2 C 0.05 1.22 5.53 86.30 0.48 1.70 16 3 N -0.52 -15.46 4.09 -896.23 -3.66 -19.12 16 4 C 0.07 2.04 5.37 86.30 0.46 2.50 16 5 C 0.06 2.44 6.25 71.98 0.45 2.89 16 6 O -0.39 -18.96 7.52 -148.98 -1.12 -20.08 16 7 C 0.21 12.03 5.69 71.24 0.41 12.43 16 8 C -0.54 -31.76 9.43 25.60 0.24 -31.52 16 9 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 10 C 0.01 0.50 5.46 84.65 0.46 0.96 16 11 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16 12 Si 0.98 44.58 29.54 68.60 2.03 46.61 16 13 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 14 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 16 C 0.05 1.71 4.40 86.30 0.38 2.09 16 17 C 0.11 2.98 2.29 44.94 0.10 3.09 16 18 H 0.08 2.03 6.56 -2.38 -0.02 2.02 16 19 C -0.15 -4.16 5.36 30.65 0.16 -3.99 16 20 C -0.11 -2.44 6.00 30.67 0.18 -2.25 16 21 C -0.16 -3.58 6.08 30.65 0.19 -3.39 16 22 C 0.06 1.43 6.56 86.33 0.57 2.00 16 23 N -0.67 -19.70 6.23 -491.69 -3.06 -22.76 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.05 1.01 6.81 -2.39 -0.02 0.99 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.03 0.65 8.05 -2.39 -0.02 0.63 16 28 H 0.07 1.67 6.13 -2.39 -0.01 1.66 16 29 H 0.03 0.99 7.97 -2.39 -0.02 0.97 16 30 H 0.10 2.59 6.36 -2.39 -0.02 2.57 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H -0.02 -1.26 8.14 -2.38 -0.02 -1.28 16 34 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 35 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.03 0.83 8.10 -2.39 -0.02 0.81 16 37 H 0.08 3.23 5.16 -2.38 -0.01 3.21 16 38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.33 11.78 8.79 -89.69 -0.79 10.99 16 Total: -1.00 -63.53 354.29 -0.60 -64.14 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.14 Total: 22.88 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 4.79 Total: -15.56 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -6.44 Total: -97.99 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -1.12 Total: -20.08 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -63.53 -0.60 -64.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385223916.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.770 kcal (2) G-P(sol) polarization free energy of solvation -63.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds