Wall clock time and date at job start Mon Mar 30 2020 04:52:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46901 * 109.47055 * 2 1
4 4 C 1.46897 * 111.00245 * 287.71356 * 3 2 1
5 5 C 1.52991 * 109.47106 * 158.33749 * 4 3 2
6 6 O 1.42900 * 109.47200 * 67.51005 * 5 4 3
7 7 C 1.42905 * 114.00098 * 180.02562 * 6 5 4
8 8 C 1.50703 * 109.47193 * 179.97438 * 7 6 5
9 9 H 1.08001 * 119.99635 * 359.97438 * 8 7 6
10 10 C 1.37873 * 119.99900 * 179.97438 * 8 7 6
11 11 N 1.31513 * 120.00192 * 0.02562 * 10 8 7
12 12 Si 1.86799 * 119.99917 * 179.97438 * 10 8 7
13 13 H 1.48508 * 109.46897 * 60.00139 * 12 10 8
14 14 H 1.48503 * 109.47211 * 179.97438 * 12 10 8
15 15 H 1.48492 * 109.47324 * 300.00285 * 12 10 8
16 16 C 1.46901 * 110.99346 * 163.76286 * 3 2 1
17 17 C 1.53002 * 109.47291 * 291.97633 * 16 3 2
18 18 H 1.09006 * 109.46134 * 65.00615 * 17 16 3
19 19 C 1.53039 * 109.46606 * 184.97952 * 17 16 3
20 20 C 1.53114 * 109.28186 * 179.19608 * 19 17 16
21 21 C 1.53116 * 109.15897 * 302.35184 * 20 19 17
22 22 C 1.53039 * 109.28511 * 57.65123 * 21 20 19
23 23 N 1.46842 * 109.46560 * 305.02851 * 17 16 3
24 24 H 1.09001 * 109.47217 * 307.97603 * 1 2 3
25 25 H 1.09000 * 109.47038 * 67.97114 * 1 2 3
26 26 H 1.08992 * 109.47838 * 187.97172 * 1 2 3
27 27 H 1.09004 * 109.46781 * 240.00111 * 2 1 3
28 28 H 1.09000 * 109.46889 * 120.00781 * 2 1 3
29 29 H 1.09003 * 109.47002 * 278.33834 * 4 3 2
30 30 H 1.09000 * 109.46973 * 38.33815 * 4 3 2
31 31 H 1.08997 * 109.47265 * 187.50737 * 5 4 3
32 32 H 1.08999 * 109.47037 * 307.51225 * 5 4 3
33 33 H 1.09007 * 109.46845 * 299.99652 * 7 6 5
34 34 H 1.08997 * 109.47452 * 59.99473 * 7 6 5
35 35 H 0.96999 * 120.00073 * 180.02562 * 11 10 8
36 36 H 1.09001 * 109.47895 * 51.98195 * 16 3 2
37 37 H 1.09007 * 109.47237 * 171.98133 * 16 3 2
38 38 H 1.09004 * 109.50163 * 299.14622 * 19 17 16
39 39 H 1.09006 * 109.50019 * 59.25638 * 19 17 16
40 40 H 1.09001 * 109.51874 * 62.25126 * 20 19 17
41 41 H 1.08998 * 109.52355 * 182.37945 * 20 19 17
42 42 H 1.09008 * 109.50118 * 177.59229 * 21 20 19
43 43 H 1.09001 * 109.50235 * 297.70905 * 21 20 19
44 44 H 1.09005 * 109.45886 * 60.83117 * 22 21 20
45 45 H 1.08990 * 109.46616 * 180.81041 * 22 21 20
46 46 H 1.00906 * 110.99483 * 302.33992 * 23 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0197 1.3850 0.0000
4 6 1.8018 2.0205 -1.3064
5 6 1.8029 3.5413 -1.1402
6 8 3.1137 3.9799 -0.7777
7 6 3.2244 5.3931 -0.5963
8 6 4.6408 5.7416 -0.2177
9 1 5.3822 4.9618 -0.1244
10 6 4.9901 7.0558 0.0096
11 7 4.0872 8.0053 -0.1035
12 14 6.7457 7.4877 0.4797
13 1 7.6683 7.0528 -0.5996
14 1 6.8610 8.9564 0.6668
15 1 7.1035 6.7974 1.7448
16 6 3.4366 1.4423 0.3835
17 6 3.5830 1.0498 1.8550
18 1 3.2913 0.0074 1.9836
19 6 5.0399 1.2287 2.2881
20 6 5.1776 0.8540 3.7663
21 6 4.2308 1.7257 4.5960
22 6 2.7974 1.5323 4.0961
23 7 2.7180 1.9048 2.6779
24 1 -0.3634 0.6324 0.8101
25 1 -0.3633 0.3855 -0.9526
26 1 -0.3634 -1.0176 0.1425
27 1 1.8933 -0.5138 -0.8900
28 1 1.8933 -0.5140 0.8899
29 1 2.5994 1.7290 -1.9897
30 1 0.8416 1.6999 -1.7107
31 1 1.5100 4.0097 -2.0798
32 1 1.0968 3.8219 -0.3587
33 1 2.9608 5.9002 -1.5245
34 1 2.5478 5.7118 0.1966
35 1 4.3330 8.9299 0.0561
36 1 4.0089 0.7513 -0.2355
37 1 3.8115 2.4555 0.2388
38 1 5.6800 0.5824 1.6875
39 1 5.3364 2.2681 2.1470
40 1 4.9184 -0.1961 3.9015
41 1 6.2050 1.0203 4.0900
42 1 4.2930 1.4343 5.6445
43 1 4.5146 2.7728 4.4912
44 1 2.5095 0.4876 4.2139
45 1 2.1226 2.1625 4.6753
46 1 2.9432 2.8796 2.5468
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385223916.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:52:35
Heat of formation + Delta-G solvation = -77.907949 kcal
Electronic energy + Delta-G solvation = -22382.335565 eV
Core-core repulsion = 19305.349248 eV
Total energy + Delta-G solvation = -3076.986317 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-40.23418 -38.87122 -37.52419 -34.88609 -33.02821 -32.39883 -31.96157 -29.86819
-28.75174 -26.07785 -24.45995 -24.09467 -23.74235 -22.49499 -21.24082 -21.00740
-18.59208 -17.51008 -16.97140 -16.67116 -16.36606 -16.16760 -16.00219 -15.54568
-15.41154 -15.11277 -14.93428 -14.64578 -13.98905 -13.70467 -13.60823 -13.34810
-13.04431 -12.99160 -12.90152 -12.68345 -12.62568 -12.38861 -12.34619 -12.26656
-12.06839 -11.98811 -11.70201 -11.55872 -11.35438 -11.29329 -11.01212 -10.77596
-10.08690 -9.01873 -8.96604 -8.29352 -6.40629 1.38405 1.42300 1.50593
2.34308 3.01126 3.04665 3.27819 3.49311 3.85335 3.96531 4.09242
4.18410 4.23859 4.30375 4.37683 4.42999 4.46145 4.53590 4.62901
4.68028 4.71182 4.77472 4.82868 4.87129 4.89674 4.95199 5.00380
5.04601 5.11661 5.13991 5.17596 5.20843 5.24012 5.27309 5.41601
5.48149 5.53100 5.57128 6.01011 6.23811 6.39203 6.49464 6.57117
6.60265 6.88694 7.31146 8.82797
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.013710 B = 0.006364 C = 0.004788
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2041.823140 B = 4398.666563 C = 5847.019652
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.053 3.947
3 N -0.520 5.520
4 C 0.067 3.933
5 C 0.063 3.937
6 O -0.394 6.394
7 C 0.213 3.787
8 C -0.537 4.537
9 H 0.060 0.940
10 C 0.009 3.991
11 N -0.931 5.931
12 Si 0.976 3.024
13 H -0.267 1.267
14 H -0.277 1.277
15 H -0.267 1.267
16 C 0.054 3.946
17 C 0.108 3.892
18 H 0.082 0.918
19 C -0.154 4.154
20 C -0.110 4.110
21 C -0.158 4.158
22 C 0.061 3.939
23 N -0.669 5.669
24 H 0.052 0.948
25 H 0.051 0.949
26 H 0.070 0.930
27 H 0.030 0.970
28 H 0.074 0.926
29 H 0.031 0.969
30 H 0.104 0.896
31 H 0.040 0.960
32 H 0.040 0.960
33 H -0.021 1.021
34 H -0.018 1.018
35 H 0.269 0.731
36 H 0.027 0.973
37 H 0.079 0.921
38 H 0.069 0.931
39 H 0.040 0.960
40 H 0.074 0.926
41 H 0.062 0.938
42 H 0.080 0.920
43 H 0.043 0.957
44 H 0.077 0.923
45 H 0.071 0.929
46 H 0.332 0.668
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.999 -17.624 5.115 18.595
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.075 4.075
3 N -0.245 5.245
4 C -0.061 4.061
5 C -0.014 4.014
6 O -0.314 6.314
7 C 0.138 3.862
8 C -0.575 4.575
9 H 0.078 0.922
10 C -0.190 4.190
11 N -0.570 5.570
12 Si 0.799 3.201
13 H -0.191 1.191
14 H -0.202 1.202
15 H -0.192 1.192
16 C -0.075 4.075
17 C -0.002 4.002
18 H 0.100 0.900
19 C -0.194 4.194
20 C -0.148 4.148
21 C -0.197 4.197
22 C -0.069 4.069
23 N -0.297 5.297
24 H 0.071 0.929
25 H 0.070 0.930
26 H 0.089 0.911
27 H 0.048 0.952
28 H 0.092 0.908
29 H 0.050 0.950
30 H 0.122 0.878
31 H 0.058 0.942
32 H 0.058 0.942
33 H -0.003 1.003
34 H -0.001 1.001
35 H 0.078 0.922
36 H 0.045 0.955
37 H 0.097 0.903
38 H 0.088 0.912
39 H 0.059 0.941
40 H 0.093 0.907
41 H 0.081 0.919
42 H 0.098 0.902
43 H 0.062 0.938
44 H 0.096 0.904
45 H 0.090 0.910
46 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -3.745 -17.685 5.369 18.858
hybrid contribution 1.863 0.982 -0.390 2.142
sum -1.882 -16.704 4.979 17.531
Atomic orbital electron populations
1.21703 0.94213 1.01861 1.01745 1.22115 0.96727 0.88328 1.00318
1.61870 1.17888 1.17369 1.27332 1.22116 1.01600 0.91870 0.90528
1.22523 0.85615 0.95395 0.97851 1.87767 1.29646 1.24081 1.89944
1.19719 0.96248 0.77355 0.92853 1.21282 0.95372 0.93108 1.47757
0.92171 1.25870 1.02645 0.95587 0.94878 1.70068 1.36033 1.01039
1.49874 0.85346 0.78347 0.77261 0.79143 1.19146 1.20165 1.19163
1.22376 0.88312 1.02086 0.94684 1.21428 0.89591 0.97330 0.91889
0.90017 1.22255 0.98489 1.01045 0.97636 1.21483 0.99518 1.00060
0.93704 1.22265 0.97397 0.99406 1.00624 1.22035 0.94674 1.01739
0.88460 1.60548 1.55583 1.07284 1.06254 0.92900 0.92971 0.91098
0.95226 0.90760 0.95026 0.87783 0.94167 0.94218 1.00348 1.00052
0.92214 0.95464 0.90297 0.91205 0.94084 0.90732 0.91915 0.90169
0.93805 0.90419 0.91009 0.85130
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.78 9.85 71.98 0.71 -2.07 16
2 C 0.05 1.22 5.53 86.30 0.48 1.70 16
3 N -0.52 -15.46 4.09 -896.23 -3.66 -19.12 16
4 C 0.07 2.04 5.37 86.30 0.46 2.50 16
5 C 0.06 2.44 6.25 71.98 0.45 2.89 16
6 O -0.39 -18.96 7.52 -148.98 -1.12 -20.08 16
7 C 0.21 12.03 5.69 71.24 0.41 12.43 16
8 C -0.54 -31.76 9.43 25.60 0.24 -31.52 16
9 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16
10 C 0.01 0.50 5.46 84.65 0.46 0.96 16
11 N -0.93 -56.40 13.29 21.45 0.28 -56.11 16
12 Si 0.98 44.58 29.54 68.60 2.03 46.61 16
13 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16
14 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16
15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16
16 C 0.05 1.71 4.40 86.30 0.38 2.09 16
17 C 0.11 2.98 2.29 44.94 0.10 3.09 16
18 H 0.08 2.03 6.56 -2.38 -0.02 2.02 16
19 C -0.15 -4.16 5.36 30.65 0.16 -3.99 16
20 C -0.11 -2.44 6.00 30.67 0.18 -2.25 16
21 C -0.16 -3.58 6.08 30.65 0.19 -3.39 16
22 C 0.06 1.43 6.56 86.33 0.57 2.00 16
23 N -0.67 -19.70 6.23 -491.69 -3.06 -22.76 16
24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16
25 H 0.05 1.01 6.81 -2.39 -0.02 0.99 16
26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16
27 H 0.03 0.65 8.05 -2.39 -0.02 0.63 16
28 H 0.07 1.67 6.13 -2.39 -0.01 1.66 16
29 H 0.03 0.99 7.97 -2.39 -0.02 0.97 16
30 H 0.10 2.59 6.36 -2.39 -0.02 2.57 16
31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16
32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16
33 H -0.02 -1.26 8.14 -2.38 -0.02 -1.28 16
34 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16
35 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16
36 H 0.03 0.83 8.10 -2.39 -0.02 0.81 16
37 H 0.08 3.23 5.16 -2.38 -0.01 3.21 16
38 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16
39 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16
40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16
41 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16
42 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16
43 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16
44 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16
45 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16
46 H 0.33 11.78 8.79 -89.69 -0.79 10.99 16
Total: -1.00 -63.53 354.29 -0.60 -64.14
By element:
Atomic # 1 Polarization: 22.75 SS G_CDS: 0.14 Total: 22.88 kcal
Atomic # 6 Polarization: -20.35 SS G_CDS: 4.79 Total: -15.56 kcal
Atomic # 7 Polarization: -91.56 SS G_CDS: -6.44 Total: -97.99 kcal
Atomic # 8 Polarization: -18.96 SS G_CDS: -1.12 Total: -20.08 kcal
Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal
Total: -63.53 -0.60 -64.14 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385223916.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.770 kcal
(2) G-P(sol) polarization free energy of solvation -63.533 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.303 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.605 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.138 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.908 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds