Wall clock time and date at job start Mon Mar 30 2020 05:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46897 * 111.00201 * 2 1 4 4 C 1.46892 * 111.00238 * 236.04498 * 2 1 3 5 5 C 1.53004 * 110.01721 * 305.04804 * 4 2 1 6 6 N 1.46905 * 109.46972 * 304.88611 * 5 4 2 7 7 C 1.46895 * 111.00176 * 184.80357 * 6 5 4 8 8 C 1.52999 * 109.47300 * 180.02562 * 7 6 5 9 9 O 1.42899 * 109.47307 * 64.99957 * 8 7 6 10 10 C 1.42888 * 114.00265 * 179.97438 * 9 8 7 11 11 C 1.50708 * 109.47336 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99307 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00087 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00276 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99875 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47371 * 89.99880 * 15 13 11 17 17 H 1.48499 * 109.46991 * 209.99832 * 15 13 11 18 18 H 1.48501 * 109.47224 * 329.99946 * 15 13 11 19 19 C 1.54272 * 110.03611 * 183.65631 * 4 2 1 20 20 C 1.54959 * 104.15842 * 217.13539 * 19 4 2 21 21 C 1.54892 * 102.78043 * 37.88836 * 20 19 4 22 22 C 1.53874 * 110.03224 * 66.43402 * 4 2 1 23 23 H 1.08994 * 109.47634 * 190.11676 * 1 2 3 24 24 H 1.09002 * 109.46816 * 70.11452 * 1 2 3 25 25 H 1.09001 * 109.46923 * 310.12047 * 1 2 3 26 26 H 1.09004 * 109.47298 * 53.29461 * 3 2 1 27 27 H 1.09005 * 109.47667 * 173.29334 * 3 2 1 28 28 H 1.08999 * 109.47566 * 293.29234 * 3 2 1 29 29 H 1.08993 * 109.47098 * 64.88515 * 5 4 2 30 30 H 1.09004 * 109.47332 * 184.89018 * 5 4 2 31 31 H 1.00900 * 110.99653 * 60.84960 * 6 5 4 32 32 H 1.08995 * 109.46957 * 300.00350 * 7 6 5 33 33 H 1.09003 * 109.46867 * 59.99801 * 7 6 5 34 34 H 1.09004 * 109.47217 * 185.00008 * 8 7 6 35 35 H 1.09005 * 109.46956 * 305.00145 * 8 7 6 36 36 H 1.08997 * 109.47939 * 300.00492 * 10 9 8 37 37 H 1.09007 * 109.46933 * 60.00722 * 10 9 8 38 38 H 0.97000 * 119.99940 * 180.02562 * 14 13 11 39 39 H 1.08997 * 110.48504 * 335.78137 * 19 4 2 40 40 H 1.08999 * 110.48779 * 98.42493 * 19 4 2 41 41 H 1.08999 * 110.72590 * 279.57344 * 20 19 4 42 42 H 1.09001 * 110.92211 * 156.29362 * 20 19 4 43 43 H 1.08997 * 110.48896 * 203.40683 * 21 20 19 44 44 H 1.08999 * 110.48780 * 80.76092 * 21 20 19 45 45 H 1.09000 * 110.03631 * 238.57134 * 22 4 2 46 46 H 1.08999 * 110.03531 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 -1.1375 5 6 1.4124 -2.1805 -1.1311 6 7 1.6820 -2.8154 0.1659 7 6 1.2369 -4.2153 0.1695 8 6 1.5332 -4.8412 1.5338 9 8 0.7481 -4.1924 2.5362 10 6 0.9500 -4.7048 3.8546 11 6 0.0776 -3.9514 4.8255 12 1 -0.5669 -3.1607 4.4709 13 6 0.1023 -4.2717 6.1663 14 7 0.8875 -5.2343 6.5982 15 14 -0.9796 -3.3384 7.3695 16 1 -2.2938 -4.0202 7.4854 17 1 -0.3221 -3.3015 8.7005 18 1 -1.1830 -1.9515 6.8793 19 6 3.5352 -0.8287 -1.0652 20 6 3.9885 -0.7287 -2.5436 21 6 2.9838 0.2869 -3.1421 22 6 1.6448 -0.0574 -2.4576 23 1 -0.3634 -1.0116 0.1805 24 1 -0.3633 0.3496 -0.9664 25 1 -0.3633 0.6622 0.7859 26 1 1.5522 1.9308 0.8239 27 1 3.0785 1.3449 0.1200 28 1 1.7463 1.8563 -0.9439 29 1 0.3359 -2.1306 -1.2944 30 1 1.8736 -2.7672 -1.9256 31 1 1.2529 -2.2976 0.9181 32 1 0.1650 -4.2562 -0.0235 33 1 1.7671 -4.7671 -0.6067 34 1 1.2850 -5.9023 1.5084 35 1 2.5912 -4.7210 1.7667 36 1 0.6895 -5.7630 3.8772 37 1 1.9960 -4.5820 4.1360 38 1 0.9045 -5.4598 7.5414 39 1 3.9245 0.0109 -0.4894 40 1 3.8584 -1.7740 -0.6293 41 1 3.9022 -1.6954 -3.0397 42 1 5.0082 -0.3501 -2.6133 43 1 2.9054 0.1553 -4.2213 44 1 3.2838 1.3070 -2.9020 45 1 1.0600 -0.7215 -3.0941 46 1 1.0843 0.8551 -2.2542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385280384.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:52 Heat of formation + Delta-G solvation = -46.736715 kcal Electronic energy + Delta-G solvation = -21855.679786 eV Core-core repulsion = 18780.045155 eV Total energy + Delta-G solvation = -3075.634631 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.09746 -36.99361 -35.06755 -34.79775 -32.63309 -30.15289 -28.99133 -27.79030 -27.43102 -26.39459 -23.60653 -23.25458 -22.29022 -21.28848 -20.59550 -18.48859 -16.70589 -16.41500 -15.93144 -15.60312 -15.10081 -14.98271 -14.85801 -14.33165 -14.04327 -13.83652 -13.65722 -13.24153 -13.02317 -12.34692 -12.29725 -12.03047 -11.84830 -11.75050 -11.55057 -11.44497 -11.25035 -11.19157 -11.02121 -10.87403 -10.77060 -10.71805 -10.64784 -10.50281 -10.22962 -9.92751 -9.04650 -8.76117 -8.19522 -8.10275 -8.00245 -6.05951 -4.07190 3.33264 3.38144 3.43777 3.87857 4.33455 4.39496 4.57830 4.64130 4.84329 5.02571 5.13301 5.16009 5.23443 5.30554 5.31142 5.37087 5.44448 5.50496 5.57706 5.59349 5.61002 5.68122 5.74462 5.76167 5.82694 5.85329 5.91406 5.99893 6.00785 6.03924 6.16467 6.29135 6.30685 6.43577 6.48965 7.08620 7.15610 7.18155 7.41194 7.50869 7.84328 7.91372 8.21488 8.64992 9.06354 9.57398 11.05693 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.023828 B = 0.003925 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.785169 B = 7132.441770 C = 7775.819454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.526 5.526 3 C 0.020 3.980 4 C 0.115 3.885 5 C 0.075 3.925 6 N -0.677 5.677 7 C 0.065 3.935 8 C 0.064 3.936 9 O -0.398 6.398 10 C 0.198 3.802 11 C -0.512 4.512 12 H 0.065 0.935 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.907 3.093 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.272 1.272 19 C -0.108 4.108 20 C -0.126 4.126 21 C -0.120 4.120 22 C -0.154 4.154 23 H 0.069 0.931 24 H 0.023 0.977 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.025 0.975 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.365 0.635 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.038 0.962 35 H 0.046 0.954 36 H 0.003 0.997 37 H 0.006 0.994 38 H 0.263 0.737 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.527 10.282 -19.635 22.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.248 5.248 3 C -0.128 4.128 4 C 0.024 3.976 5 C -0.056 4.056 6 N -0.311 5.311 7 C -0.065 4.065 8 C -0.014 4.014 9 O -0.318 6.318 10 C 0.123 3.877 11 C -0.550 4.550 12 H 0.084 0.916 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.734 3.266 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.196 1.196 19 C -0.145 4.145 20 C -0.164 4.164 21 C -0.158 4.158 22 C -0.194 4.194 23 H 0.088 0.912 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.088 0.912 31 H 0.187 0.813 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.020 0.980 37 H 0.024 0.976 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.240 9.948 -19.188 22.025 hybrid contribution -1.665 0.630 0.065 1.781 sum 2.575 10.578 -19.123 22.005 Atomic orbital electron populations 1.22452 0.87765 1.02809 0.99866 1.62091 1.07369 1.13384 1.41986 1.22467 1.01269 0.89046 0.99983 1.21775 0.95821 0.92656 0.87301 1.21982 0.97139 0.93191 0.93241 1.60360 1.63737 1.02333 1.04681 1.21945 0.97826 0.90114 0.96591 1.22274 0.95676 0.94948 0.88541 1.87789 1.64726 1.61125 1.18143 1.20155 0.96306 0.93890 0.77308 1.21057 1.23900 1.18732 0.91322 0.91643 1.24938 0.95998 0.95455 0.98117 1.69967 1.38506 1.29951 1.15428 0.86356 0.80124 0.80215 0.79904 1.20573 1.21104 1.19625 1.22448 0.92826 1.03753 0.95522 1.22537 0.98402 0.98987 0.96481 1.22300 0.95031 0.99223 0.99251 1.22854 0.98068 1.00732 0.97749 0.91202 0.95824 0.91337 0.91599 0.91016 0.95633 0.95846 0.91195 0.81273 0.95277 0.91039 0.94421 0.93586 0.97966 0.97628 0.92722 0.91120 0.89458 0.91643 0.91733 0.92098 0.91978 0.91720 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 8.55 60.06 0.51 0.75 16 2 N -0.53 -6.56 4.15 -234.10 -0.97 -7.53 16 3 C 0.02 0.22 8.96 60.06 0.54 0.75 16 4 C 0.11 1.30 0.37 -130.48 -0.05 1.26 16 5 C 0.07 0.94 3.70 -3.82 -0.01 0.92 16 6 N -0.68 -10.47 5.87 -113.78 -0.67 -11.14 16 7 C 0.06 1.01 6.10 -3.83 -0.02 0.99 16 8 C 0.06 1.23 6.28 37.16 0.23 1.46 16 9 O -0.40 -9.75 9.84 -35.23 -0.35 -10.09 16 10 C 0.20 5.55 5.69 36.01 0.20 5.75 16 11 C -0.51 -15.30 9.43 -34.44 -0.32 -15.63 16 12 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16 15 Si 0.91 22.13 29.54 -169.99 -5.02 17.11 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 C -0.11 -1.21 5.78 -25.03 -0.14 -1.35 16 20 C -0.13 -1.14 6.91 -24.70 -0.17 -1.31 16 21 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 22 C -0.15 -1.49 4.86 -25.61 -0.12 -1.61 16 23 H 0.07 0.94 6.17 -51.93 -0.32 0.62 16 24 H 0.02 0.25 6.61 -51.93 -0.34 -0.09 16 25 H 0.07 0.80 7.97 -51.93 -0.41 0.39 16 26 H 0.07 0.68 8.00 -51.93 -0.42 0.26 16 27 H 0.07 0.75 6.04 -51.93 -0.31 0.43 16 28 H 0.03 0.24 6.09 -51.93 -0.32 -0.07 16 29 H 0.02 0.30 6.82 -51.93 -0.35 -0.06 16 30 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 31 H 0.37 6.58 6.84 -39.29 -0.27 6.31 16 32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.07 0.80 5.72 -51.93 -0.30 0.51 16 40 H 0.09 1.14 7.42 -51.93 -0.39 0.75 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 46 H 0.07 0.65 5.18 -51.93 -0.27 0.38 16 LS Contribution 349.12 15.07 5.26 5.26 Total: -1.00 -30.72 349.12 -8.93 -39.65 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -8.29 Total: 1.01 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: 0.37 Total: -7.68 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.90 Total: -45.26 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.35 Total: -10.09 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.72 -8.93 -39.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385280384.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.086 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds