Wall clock time and date at job start Mon Mar 30 2020 05:00:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46896 * 1
3 3 C 1.46897 * 111.00201 * 2 1
4 4 C 1.46892 * 111.00238 * 236.04498 * 2 1 3
5 5 C 1.53004 * 110.01721 * 305.04804 * 4 2 1
6 6 N 1.46905 * 109.46972 * 304.88611 * 5 4 2
7 7 C 1.46895 * 111.00176 * 184.80357 * 6 5 4
8 8 C 1.52999 * 109.47300 * 180.02562 * 7 6 5
9 9 O 1.42899 * 109.47307 * 64.99957 * 8 7 6
10 10 C 1.42888 * 114.00265 * 179.97438 * 9 8 7
11 11 C 1.50708 * 109.47336 * 179.97438 * 10 9 8
12 12 H 1.08002 * 119.99307 * 0.02562 * 11 10 9
13 13 C 1.37873 * 120.00087 * 180.02562 * 11 10 9
14 14 N 1.31516 * 120.00276 * 0.02562 * 13 11 10
15 15 Si 1.86796 * 119.99875 * 180.02562 * 13 11 10
16 16 H 1.48504 * 109.47371 * 89.99880 * 15 13 11
17 17 H 1.48499 * 109.46991 * 209.99832 * 15 13 11
18 18 H 1.48501 * 109.47224 * 329.99946 * 15 13 11
19 19 C 1.54272 * 110.03611 * 183.65631 * 4 2 1
20 20 C 1.54959 * 104.15842 * 217.13539 * 19 4 2
21 21 C 1.54892 * 102.78043 * 37.88836 * 20 19 4
22 22 C 1.53874 * 110.03224 * 66.43402 * 4 2 1
23 23 H 1.08994 * 109.47634 * 190.11676 * 1 2 3
24 24 H 1.09002 * 109.46816 * 70.11452 * 1 2 3
25 25 H 1.09001 * 109.46923 * 310.12047 * 1 2 3
26 26 H 1.09004 * 109.47298 * 53.29461 * 3 2 1
27 27 H 1.09005 * 109.47667 * 173.29334 * 3 2 1
28 28 H 1.08999 * 109.47566 * 293.29234 * 3 2 1
29 29 H 1.08993 * 109.47098 * 64.88515 * 5 4 2
30 30 H 1.09004 * 109.47332 * 184.89018 * 5 4 2
31 31 H 1.00900 * 110.99653 * 60.84960 * 6 5 4
32 32 H 1.08995 * 109.46957 * 300.00350 * 7 6 5
33 33 H 1.09003 * 109.46867 * 59.99801 * 7 6 5
34 34 H 1.09004 * 109.47217 * 185.00008 * 8 7 6
35 35 H 1.09005 * 109.46956 * 305.00145 * 8 7 6
36 36 H 1.08997 * 109.47939 * 300.00492 * 10 9 8
37 37 H 1.09007 * 109.46933 * 60.00722 * 10 9 8
38 38 H 0.97000 * 119.99940 * 180.02562 * 14 13 11
39 39 H 1.08997 * 110.48504 * 335.78137 * 19 4 2
40 40 H 1.08999 * 110.48779 * 98.42493 * 19 4 2
41 41 H 1.08999 * 110.72590 * 279.57344 * 20 19 4
42 42 H 1.09001 * 110.92211 * 156.29362 * 20 19 4
43 43 H 1.08997 * 110.48896 * 203.40683 * 21 20 19
44 44 H 1.08999 * 110.48780 * 80.76092 * 21 20 19
45 45 H 1.09000 * 110.03631 * 238.57134 * 22 4 2
46 46 H 1.08999 * 110.03531 * 0.02562 * 22 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.9954 -0.7659 -1.1375
5 6 1.4124 -2.1805 -1.1311
6 7 1.6820 -2.8154 0.1659
7 6 1.2369 -4.2153 0.1695
8 6 1.5332 -4.8412 1.5338
9 8 0.7481 -4.1924 2.5362
10 6 0.9500 -4.7048 3.8546
11 6 0.0776 -3.9514 4.8255
12 1 -0.5669 -3.1607 4.4709
13 6 0.1023 -4.2717 6.1663
14 7 0.8875 -5.2343 6.5982
15 14 -0.9796 -3.3384 7.3695
16 1 -2.2938 -4.0202 7.4854
17 1 -0.3221 -3.3015 8.7005
18 1 -1.1830 -1.9515 6.8793
19 6 3.5352 -0.8287 -1.0652
20 6 3.9885 -0.7287 -2.5436
21 6 2.9838 0.2869 -3.1421
22 6 1.6448 -0.0574 -2.4576
23 1 -0.3634 -1.0116 0.1805
24 1 -0.3633 0.3496 -0.9664
25 1 -0.3633 0.6622 0.7859
26 1 1.5522 1.9308 0.8239
27 1 3.0785 1.3449 0.1200
28 1 1.7463 1.8563 -0.9439
29 1 0.3359 -2.1306 -1.2944
30 1 1.8736 -2.7672 -1.9256
31 1 1.2529 -2.2976 0.9181
32 1 0.1650 -4.2562 -0.0235
33 1 1.7671 -4.7671 -0.6067
34 1 1.2850 -5.9023 1.5084
35 1 2.5912 -4.7210 1.7667
36 1 0.6895 -5.7630 3.8772
37 1 1.9960 -4.5820 4.1360
38 1 0.9045 -5.4598 7.5414
39 1 3.9245 0.0109 -0.4894
40 1 3.8584 -1.7740 -0.6293
41 1 3.9022 -1.6954 -3.0397
42 1 5.0082 -0.3501 -2.6133
43 1 2.9054 0.1553 -4.2213
44 1 3.2838 1.3070 -2.9020
45 1 1.0600 -0.7215 -3.0941
46 1 1.0843 0.8551 -2.2542
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385280384.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:00:52
Heat of formation + Delta-G solvation = -46.736715 kcal
Electronic energy + Delta-G solvation = -21855.679786 eV
Core-core repulsion = 18780.045155 eV
Total energy + Delta-G solvation = -3075.634631 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-40.09746 -36.99361 -35.06755 -34.79775 -32.63309 -30.15289 -28.99133 -27.79030
-27.43102 -26.39459 -23.60653 -23.25458 -22.29022 -21.28848 -20.59550 -18.48859
-16.70589 -16.41500 -15.93144 -15.60312 -15.10081 -14.98271 -14.85801 -14.33165
-14.04327 -13.83652 -13.65722 -13.24153 -13.02317 -12.34692 -12.29725 -12.03047
-11.84830 -11.75050 -11.55057 -11.44497 -11.25035 -11.19157 -11.02121 -10.87403
-10.77060 -10.71805 -10.64784 -10.50281 -10.22962 -9.92751 -9.04650 -8.76117
-8.19522 -8.10275 -8.00245 -6.05951 -4.07190 3.33264 3.38144 3.43777
3.87857 4.33455 4.39496 4.57830 4.64130 4.84329 5.02571 5.13301
5.16009 5.23443 5.30554 5.31142 5.37087 5.44448 5.50496 5.57706
5.59349 5.61002 5.68122 5.74462 5.76167 5.82694 5.85329 5.91406
5.99893 6.00785 6.03924 6.16467 6.29135 6.30685 6.43577 6.48965
7.08620 7.15610 7.18155 7.41194 7.50869 7.84328 7.91372 8.21488
8.64992 9.06354 9.57398 11.05693
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.023828 B = 0.003925 C = 0.003600
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1174.785169 B = 7132.441770 C = 7775.819454
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 N -0.526 5.526
3 C 0.020 3.980
4 C 0.115 3.885
5 C 0.075 3.925
6 N -0.677 5.677
7 C 0.065 3.935
8 C 0.064 3.936
9 O -0.398 6.398
10 C 0.198 3.802
11 C -0.512 4.512
12 H 0.065 0.935
13 C 0.056 3.944
14 N -0.899 5.899
15 Si 0.907 3.093
16 H -0.280 1.280
17 H -0.285 1.285
18 H -0.272 1.272
19 C -0.108 4.108
20 C -0.126 4.126
21 C -0.120 4.120
22 C -0.154 4.154
23 H 0.069 0.931
24 H 0.023 0.977
25 H 0.068 0.932
26 H 0.065 0.935
27 H 0.071 0.929
28 H 0.025 0.975
29 H 0.023 0.977
30 H 0.070 0.930
31 H 0.365 0.635
32 H 0.029 0.971
33 H 0.071 0.929
34 H 0.038 0.962
35 H 0.046 0.954
36 H 0.003 0.997
37 H 0.006 0.994
38 H 0.263 0.737
39 H 0.070 0.930
40 H 0.087 0.913
41 H 0.065 0.935
42 H 0.064 0.936
43 H 0.060 0.940
44 H 0.061 0.939
45 H 0.064 0.936
46 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.527 10.282 -19.635 22.443
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 N -0.248 5.248
3 C -0.128 4.128
4 C 0.024 3.976
5 C -0.056 4.056
6 N -0.311 5.311
7 C -0.065 4.065
8 C -0.014 4.014
9 O -0.318 6.318
10 C 0.123 3.877
11 C -0.550 4.550
12 H 0.084 0.916
13 C -0.145 4.145
14 N -0.539 5.539
15 Si 0.734 3.266
16 H -0.206 1.206
17 H -0.211 1.211
18 H -0.196 1.196
19 C -0.145 4.145
20 C -0.164 4.164
21 C -0.158 4.158
22 C -0.194 4.194
23 H 0.088 0.912
24 H 0.042 0.958
25 H 0.087 0.913
26 H 0.084 0.916
27 H 0.090 0.910
28 H 0.044 0.956
29 H 0.042 0.958
30 H 0.088 0.912
31 H 0.187 0.813
32 H 0.047 0.953
33 H 0.090 0.910
34 H 0.056 0.944
35 H 0.064 0.936
36 H 0.020 0.980
37 H 0.024 0.976
38 H 0.073 0.927
39 H 0.089 0.911
40 H 0.105 0.895
41 H 0.084 0.916
42 H 0.083 0.917
43 H 0.079 0.921
44 H 0.080 0.920
45 H 0.083 0.917
46 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 4.240 9.948 -19.188 22.025
hybrid contribution -1.665 0.630 0.065 1.781
sum 2.575 10.578 -19.123 22.005
Atomic orbital electron populations
1.22452 0.87765 1.02809 0.99866 1.62091 1.07369 1.13384 1.41986
1.22467 1.01269 0.89046 0.99983 1.21775 0.95821 0.92656 0.87301
1.21982 0.97139 0.93191 0.93241 1.60360 1.63737 1.02333 1.04681
1.21945 0.97826 0.90114 0.96591 1.22274 0.95676 0.94948 0.88541
1.87789 1.64726 1.61125 1.18143 1.20155 0.96306 0.93890 0.77308
1.21057 1.23900 1.18732 0.91322 0.91643 1.24938 0.95998 0.95455
0.98117 1.69967 1.38506 1.29951 1.15428 0.86356 0.80124 0.80215
0.79904 1.20573 1.21104 1.19625 1.22448 0.92826 1.03753 0.95522
1.22537 0.98402 0.98987 0.96481 1.22300 0.95031 0.99223 0.99251
1.22854 0.98068 1.00732 0.97749 0.91202 0.95824 0.91337 0.91599
0.91016 0.95633 0.95846 0.91195 0.81273 0.95277 0.91039 0.94421
0.93586 0.97966 0.97628 0.92722 0.91120 0.89458 0.91643 0.91733
0.92098 0.91978 0.91720 0.91548
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.23 8.55 60.06 0.51 0.75 16
2 N -0.53 -6.56 4.15 -234.10 -0.97 -7.53 16
3 C 0.02 0.22 8.96 60.06 0.54 0.75 16
4 C 0.11 1.30 0.37 -130.48 -0.05 1.26 16
5 C 0.07 0.94 3.70 -3.82 -0.01 0.92 16
6 N -0.68 -10.47 5.87 -113.78 -0.67 -11.14 16
7 C 0.06 1.01 6.10 -3.83 -0.02 0.99 16
8 C 0.06 1.23 6.28 37.16 0.23 1.46 16
9 O -0.40 -9.75 9.84 -35.23 -0.35 -10.09 16
10 C 0.20 5.55 5.69 36.01 0.20 5.75 16
11 C -0.51 -15.30 9.43 -34.44 -0.32 -15.63 16
12 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16
13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
14 N -0.90 -27.33 13.29 55.43 0.74 -26.60 16
15 Si 0.91 22.13 29.54 -169.99 -5.02 17.11 16
16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16
19 C -0.11 -1.21 5.78 -25.03 -0.14 -1.35 16
20 C -0.13 -1.14 6.91 -24.70 -0.17 -1.31 16
21 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16
22 C -0.15 -1.49 4.86 -25.61 -0.12 -1.61 16
23 H 0.07 0.94 6.17 -51.93 -0.32 0.62 16
24 H 0.02 0.25 6.61 -51.93 -0.34 -0.09 16
25 H 0.07 0.80 7.97 -51.93 -0.41 0.39 16
26 H 0.07 0.68 8.00 -51.93 -0.42 0.26 16
27 H 0.07 0.75 6.04 -51.93 -0.31 0.43 16
28 H 0.03 0.24 6.09 -51.93 -0.32 -0.07 16
29 H 0.02 0.30 6.82 -51.93 -0.35 -0.06 16
30 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16
31 H 0.37 6.58 6.84 -39.29 -0.27 6.31 16
32 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16
33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
35 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16
36 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16
37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16
38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
39 H 0.07 0.80 5.72 -51.93 -0.30 0.51 16
40 H 0.09 1.14 7.42 -51.93 -0.39 0.75 16
41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
45 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16
46 H 0.07 0.65 5.18 -51.93 -0.27 0.38 16
LS Contribution 349.12 15.07 5.26 5.26
Total: -1.00 -30.72 349.12 -8.93 -39.65
By element:
Atomic # 1 Polarization: 9.30 SS G_CDS: -8.29 Total: 1.01 kcal
Atomic # 6 Polarization: -8.05 SS G_CDS: 0.37 Total: -7.68 kcal
Atomic # 7 Polarization: -44.36 SS G_CDS: -0.90 Total: -45.26 kcal
Atomic # 8 Polarization: -9.75 SS G_CDS: -0.35 Total: -10.09 kcal
Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -30.72 -8.93 -39.65 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385280384.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.086 kcal
(2) G-P(sol) polarization free energy of solvation -30.722 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.808 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.651 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.737 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds