Wall clock time and date at job start Mon Mar 30 2020 05:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46897 * 111.00201 * 2 1 4 4 C 1.46892 * 111.00238 * 236.04498 * 2 1 3 5 5 C 1.53004 * 110.01721 * 305.04804 * 4 2 1 6 6 N 1.46905 * 109.46972 * 304.88611 * 5 4 2 7 7 C 1.46895 * 111.00176 * 184.80357 * 6 5 4 8 8 C 1.52999 * 109.47300 * 180.02562 * 7 6 5 9 9 O 1.42899 * 109.47307 * 64.99957 * 8 7 6 10 10 C 1.42888 * 114.00265 * 179.97438 * 9 8 7 11 11 C 1.50708 * 109.47336 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99307 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00087 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00276 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99875 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47371 * 89.99880 * 15 13 11 17 17 H 1.48499 * 109.46991 * 209.99832 * 15 13 11 18 18 H 1.48501 * 109.47224 * 329.99946 * 15 13 11 19 19 C 1.54272 * 110.03611 * 183.65631 * 4 2 1 20 20 C 1.54959 * 104.15842 * 217.13539 * 19 4 2 21 21 C 1.54892 * 102.78043 * 37.88836 * 20 19 4 22 22 C 1.53874 * 110.03224 * 66.43402 * 4 2 1 23 23 H 1.08994 * 109.47634 * 190.11676 * 1 2 3 24 24 H 1.09002 * 109.46816 * 70.11452 * 1 2 3 25 25 H 1.09001 * 109.46923 * 310.12047 * 1 2 3 26 26 H 1.09004 * 109.47298 * 53.29461 * 3 2 1 27 27 H 1.09005 * 109.47667 * 173.29334 * 3 2 1 28 28 H 1.08999 * 109.47566 * 293.29234 * 3 2 1 29 29 H 1.08993 * 109.47098 * 64.88515 * 5 4 2 30 30 H 1.09004 * 109.47332 * 184.89018 * 5 4 2 31 31 H 1.00900 * 110.99653 * 60.84960 * 6 5 4 32 32 H 1.08995 * 109.46957 * 300.00350 * 7 6 5 33 33 H 1.09003 * 109.46867 * 59.99801 * 7 6 5 34 34 H 1.09004 * 109.47217 * 185.00008 * 8 7 6 35 35 H 1.09005 * 109.46956 * 305.00145 * 8 7 6 36 36 H 1.08997 * 109.47939 * 300.00492 * 10 9 8 37 37 H 1.09007 * 109.46933 * 60.00722 * 10 9 8 38 38 H 0.97000 * 119.99940 * 180.02562 * 14 13 11 39 39 H 1.08997 * 110.48504 * 335.78137 * 19 4 2 40 40 H 1.08999 * 110.48779 * 98.42493 * 19 4 2 41 41 H 1.08999 * 110.72590 * 279.57344 * 20 19 4 42 42 H 1.09001 * 110.92211 * 156.29362 * 20 19 4 43 43 H 1.08997 * 110.48896 * 203.40683 * 21 20 19 44 44 H 1.08999 * 110.48780 * 80.76092 * 21 20 19 45 45 H 1.09000 * 110.03631 * 238.57134 * 22 4 2 46 46 H 1.08999 * 110.03531 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 -1.1375 5 6 1.4124 -2.1805 -1.1311 6 7 1.6820 -2.8154 0.1659 7 6 1.2369 -4.2153 0.1695 8 6 1.5332 -4.8412 1.5338 9 8 0.7481 -4.1924 2.5362 10 6 0.9500 -4.7048 3.8546 11 6 0.0776 -3.9514 4.8255 12 1 -0.5669 -3.1607 4.4709 13 6 0.1023 -4.2717 6.1663 14 7 0.8875 -5.2343 6.5982 15 14 -0.9796 -3.3384 7.3695 16 1 -2.2938 -4.0202 7.4854 17 1 -0.3221 -3.3015 8.7005 18 1 -1.1830 -1.9515 6.8793 19 6 3.5352 -0.8287 -1.0652 20 6 3.9885 -0.7287 -2.5436 21 6 2.9838 0.2869 -3.1421 22 6 1.6448 -0.0574 -2.4576 23 1 -0.3634 -1.0116 0.1805 24 1 -0.3633 0.3496 -0.9664 25 1 -0.3633 0.6622 0.7859 26 1 1.5522 1.9308 0.8239 27 1 3.0785 1.3449 0.1200 28 1 1.7463 1.8563 -0.9439 29 1 0.3359 -2.1306 -1.2944 30 1 1.8736 -2.7672 -1.9256 31 1 1.2529 -2.2976 0.9181 32 1 0.1650 -4.2562 -0.0235 33 1 1.7671 -4.7671 -0.6067 34 1 1.2850 -5.9023 1.5084 35 1 2.5912 -4.7210 1.7667 36 1 0.6895 -5.7630 3.8772 37 1 1.9960 -4.5820 4.1360 38 1 0.9045 -5.4598 7.5414 39 1 3.9245 0.0109 -0.4894 40 1 3.8584 -1.7740 -0.6293 41 1 3.9022 -1.6954 -3.0397 42 1 5.0082 -0.3501 -2.6133 43 1 2.9054 0.1553 -4.2213 44 1 3.2838 1.3070 -2.9020 45 1 1.0600 -0.7215 -3.0941 46 1 1.0843 0.8551 -2.2542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385280384.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:52 Heat of formation + Delta-G solvation = -67.723584 kcal Electronic energy + Delta-G solvation = -21856.589845 eV Core-core repulsion = 18780.045155 eV Total energy + Delta-G solvation = -3076.544690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.98419 -38.77151 -36.30950 -35.78583 -34.82796 -31.44565 -29.79550 -29.42232 -28.45914 -27.93418 -24.64886 -24.49325 -24.17006 -22.67070 -21.37228 -19.41347 -18.61538 -17.63025 -17.47937 -16.93463 -16.62942 -16.41488 -15.95922 -15.73417 -15.21922 -15.11140 -14.91602 -14.60177 -14.07326 -13.85569 -13.39542 -13.23900 -13.12469 -13.06338 -12.77021 -12.67660 -12.58530 -12.48675 -12.41054 -12.24770 -11.97085 -11.91927 -11.80259 -11.66060 -11.35946 -11.27318 -11.15300 -10.85745 -10.21226 -9.23390 -9.06163 -8.30993 -6.43243 1.39984 1.43146 1.55267 2.35525 2.97261 3.02820 3.24340 3.32614 3.74336 3.77388 3.99212 4.19850 4.26720 4.32989 4.35300 4.41309 4.49015 4.50773 4.56780 4.62640 4.64564 4.72741 4.77917 4.80805 4.84069 4.88522 4.90722 4.96689 5.01819 5.03417 5.09198 5.13244 5.19676 5.23356 5.27069 5.52654 5.55791 5.57496 5.97150 6.14304 6.22025 6.34270 6.53954 6.55860 6.83446 7.28605 8.81552 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.023828 B = 0.003925 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.785169 B = 7132.441770 C = 7775.819454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.549 5.549 3 C 0.023 3.977 4 C 0.114 3.886 5 C 0.077 3.923 6 N -0.684 5.684 7 C 0.075 3.925 8 C 0.056 3.944 9 O -0.408 6.408 10 C 0.212 3.788 11 C -0.546 4.546 12 H 0.061 0.939 13 C 0.006 3.994 14 N -0.931 5.931 15 Si 0.983 3.017 16 H -0.267 1.267 17 H -0.274 1.274 18 H -0.264 1.264 19 C -0.108 4.108 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.149 4.149 23 H 0.050 0.950 24 H 0.038 0.962 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.023 0.977 30 H 0.082 0.918 31 H 0.349 0.651 32 H 0.027 0.973 33 H 0.103 0.897 34 H 0.047 0.953 35 H 0.041 0.959 36 H -0.016 1.016 37 H -0.017 1.017 38 H 0.271 0.729 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.108 11.452 -20.725 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.125 4.125 4 C 0.024 3.976 5 C -0.053 4.053 6 N -0.317 5.317 7 C -0.055 4.055 8 C -0.021 4.021 9 O -0.328 6.328 10 C 0.137 3.863 11 C -0.583 4.583 12 H 0.080 0.920 13 C -0.192 4.192 14 N -0.571 5.571 15 Si 0.806 3.194 16 H -0.192 1.192 17 H -0.199 1.199 18 H -0.189 1.189 19 C -0.146 4.146 20 C -0.158 4.158 21 C -0.152 4.152 22 C -0.188 4.188 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.101 0.899 31 H 0.168 0.832 32 H 0.045 0.955 33 H 0.121 0.879 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.002 0.998 37 H 0.001 0.999 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.834 11.110 -20.318 23.473 hybrid contribution -1.470 0.216 0.356 1.528 sum 2.364 11.325 -19.962 23.072 Atomic orbital electron populations 1.22358 0.87825 1.01612 1.00581 1.62061 1.07552 1.14560 1.43040 1.22453 1.01139 0.88223 1.00661 1.21789 0.95708 0.92001 0.88057 1.22058 0.97312 0.94035 0.91880 1.60398 1.63573 1.02115 1.05566 1.21911 0.98192 0.90584 0.94789 1.22586 0.94821 0.95704 0.89003 1.87757 1.65780 1.61745 1.17500 1.19771 0.94613 0.92758 0.79115 1.21376 1.24892 1.19471 0.92610 0.92047 1.25961 0.97204 0.96167 0.99893 1.70076 1.39583 1.31062 1.16359 0.85184 0.78248 0.78849 0.77131 1.19247 1.19915 1.18868 1.22405 0.92845 1.02326 0.97018 1.22505 0.99122 0.99494 0.94702 1.22281 0.93867 0.99203 0.99890 1.22788 0.98845 1.00519 0.96686 0.93120 0.94403 0.91461 0.91682 0.91039 0.94303 0.95935 0.89931 0.83173 0.95464 0.87910 0.93508 0.94059 0.99802 0.99935 0.92066 0.91570 0.91673 0.91366 0.90778 0.90692 0.91497 0.91297 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 8.55 127.69 1.09 1.67 16 2 N -0.55 -13.45 4.15 -894.57 -3.72 -17.16 16 3 C 0.02 0.46 8.96 127.69 1.14 1.61 16 4 C 0.11 2.48 0.37 4.26 0.00 2.48 16 5 C 0.08 1.85 3.70 86.30 0.32 2.17 16 6 N -0.68 -21.10 5.87 -513.89 -3.01 -24.11 16 7 C 0.07 2.29 6.10 86.30 0.53 2.81 16 8 C 0.06 2.19 6.28 71.98 0.45 2.64 16 9 O -0.41 -20.56 9.84 -148.98 -1.47 -22.02 16 10 C 0.21 12.36 5.69 71.24 0.41 12.77 16 11 C -0.55 -33.31 9.43 25.60 0.24 -33.07 16 12 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 13 C 0.01 0.36 5.46 84.65 0.46 0.82 16 14 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16 15 Si 0.98 45.18 29.54 68.60 2.03 47.20 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 18 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 19 C -0.11 -2.33 5.78 31.70 0.18 -2.15 16 20 C -0.12 -1.93 6.91 31.91 0.22 -1.71 16 21 C -0.11 -1.63 6.83 31.67 0.22 -1.42 16 22 C -0.15 -2.54 4.86 31.32 0.15 -2.39 16 23 H 0.05 1.38 6.17 -2.39 -0.01 1.37 16 24 H 0.04 0.77 6.61 -2.39 -0.02 0.75 16 25 H 0.07 1.57 7.97 -2.39 -0.02 1.55 16 26 H 0.06 1.30 8.00 -2.38 -0.02 1.28 16 27 H 0.07 1.43 6.04 -2.38 -0.01 1.42 16 28 H 0.04 0.67 6.09 -2.39 -0.01 0.66 16 29 H 0.02 0.55 6.82 -2.39 -0.02 0.54 16 30 H 0.08 1.77 8.13 -2.38 -0.02 1.75 16 31 H 0.35 12.84 6.84 -89.69 -0.61 12.22 16 32 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.05 1.73 8.14 -2.38 -0.02 1.72 16 35 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 36 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 37 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.07 1.47 5.72 -2.39 -0.01 1.46 16 40 H 0.06 1.69 7.42 -2.39 -0.02 1.67 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 44 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.07 1.13 7.67 -2.39 -0.02 1.11 16 46 H 0.07 1.15 5.18 -2.39 -0.01 1.14 16 Total: -1.00 -66.33 349.12 -0.14 -66.48 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.32 Total: 20.24 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 5.42 Total: -13.76 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -6.44 Total: -98.13 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -1.47 Total: -22.02 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -66.33 -0.14 -66.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385280384.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.247 kcal (2) G-P(sol) polarization free energy of solvation -66.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds