Wall clock time and date at job start Mon Mar 30 2020 05:00:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46896 * 1
3 3 C 1.46897 * 111.00201 * 2 1
4 4 C 1.46892 * 111.00238 * 236.04498 * 2 1 3
5 5 C 1.53004 * 110.01721 * 305.04804 * 4 2 1
6 6 N 1.46905 * 109.46972 * 304.88611 * 5 4 2
7 7 C 1.46895 * 111.00176 * 184.80357 * 6 5 4
8 8 C 1.52999 * 109.47300 * 180.02562 * 7 6 5
9 9 O 1.42899 * 109.47307 * 64.99957 * 8 7 6
10 10 C 1.42888 * 114.00265 * 179.97438 * 9 8 7
11 11 C 1.50708 * 109.47336 * 179.97438 * 10 9 8
12 12 H 1.08002 * 119.99307 * 0.02562 * 11 10 9
13 13 C 1.37873 * 120.00087 * 180.02562 * 11 10 9
14 14 N 1.31516 * 120.00276 * 0.02562 * 13 11 10
15 15 Si 1.86796 * 119.99875 * 180.02562 * 13 11 10
16 16 H 1.48504 * 109.47371 * 89.99880 * 15 13 11
17 17 H 1.48499 * 109.46991 * 209.99832 * 15 13 11
18 18 H 1.48501 * 109.47224 * 329.99946 * 15 13 11
19 19 C 1.54272 * 110.03611 * 183.65631 * 4 2 1
20 20 C 1.54959 * 104.15842 * 217.13539 * 19 4 2
21 21 C 1.54892 * 102.78043 * 37.88836 * 20 19 4
22 22 C 1.53874 * 110.03224 * 66.43402 * 4 2 1
23 23 H 1.08994 * 109.47634 * 190.11676 * 1 2 3
24 24 H 1.09002 * 109.46816 * 70.11452 * 1 2 3
25 25 H 1.09001 * 109.46923 * 310.12047 * 1 2 3
26 26 H 1.09004 * 109.47298 * 53.29461 * 3 2 1
27 27 H 1.09005 * 109.47667 * 173.29334 * 3 2 1
28 28 H 1.08999 * 109.47566 * 293.29234 * 3 2 1
29 29 H 1.08993 * 109.47098 * 64.88515 * 5 4 2
30 30 H 1.09004 * 109.47332 * 184.89018 * 5 4 2
31 31 H 1.00900 * 110.99653 * 60.84960 * 6 5 4
32 32 H 1.08995 * 109.46957 * 300.00350 * 7 6 5
33 33 H 1.09003 * 109.46867 * 59.99801 * 7 6 5
34 34 H 1.09004 * 109.47217 * 185.00008 * 8 7 6
35 35 H 1.09005 * 109.46956 * 305.00145 * 8 7 6
36 36 H 1.08997 * 109.47939 * 300.00492 * 10 9 8
37 37 H 1.09007 * 109.46933 * 60.00722 * 10 9 8
38 38 H 0.97000 * 119.99940 * 180.02562 * 14 13 11
39 39 H 1.08997 * 110.48504 * 335.78137 * 19 4 2
40 40 H 1.08999 * 110.48779 * 98.42493 * 19 4 2
41 41 H 1.08999 * 110.72590 * 279.57344 * 20 19 4
42 42 H 1.09001 * 110.92211 * 156.29362 * 20 19 4
43 43 H 1.08997 * 110.48896 * 203.40683 * 21 20 19
44 44 H 1.08999 * 110.48780 * 80.76092 * 21 20 19
45 45 H 1.09000 * 110.03631 * 238.57134 * 22 4 2
46 46 H 1.08999 * 110.03531 * 0.02562 * 22 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.9954 -0.7659 -1.1375
5 6 1.4124 -2.1805 -1.1311
6 7 1.6820 -2.8154 0.1659
7 6 1.2369 -4.2153 0.1695
8 6 1.5332 -4.8412 1.5338
9 8 0.7481 -4.1924 2.5362
10 6 0.9500 -4.7048 3.8546
11 6 0.0776 -3.9514 4.8255
12 1 -0.5669 -3.1607 4.4709
13 6 0.1023 -4.2717 6.1663
14 7 0.8875 -5.2343 6.5982
15 14 -0.9796 -3.3384 7.3695
16 1 -2.2938 -4.0202 7.4854
17 1 -0.3221 -3.3015 8.7005
18 1 -1.1830 -1.9515 6.8793
19 6 3.5352 -0.8287 -1.0652
20 6 3.9885 -0.7287 -2.5436
21 6 2.9838 0.2869 -3.1421
22 6 1.6448 -0.0574 -2.4576
23 1 -0.3634 -1.0116 0.1805
24 1 -0.3633 0.3496 -0.9664
25 1 -0.3633 0.6622 0.7859
26 1 1.5522 1.9308 0.8239
27 1 3.0785 1.3449 0.1200
28 1 1.7463 1.8563 -0.9439
29 1 0.3359 -2.1306 -1.2944
30 1 1.8736 -2.7672 -1.9256
31 1 1.2529 -2.2976 0.9181
32 1 0.1650 -4.2562 -0.0235
33 1 1.7671 -4.7671 -0.6067
34 1 1.2850 -5.9023 1.5084
35 1 2.5912 -4.7210 1.7667
36 1 0.6895 -5.7630 3.8772
37 1 1.9960 -4.5820 4.1360
38 1 0.9045 -5.4598 7.5414
39 1 3.9245 0.0109 -0.4894
40 1 3.8584 -1.7740 -0.6293
41 1 3.9022 -1.6954 -3.0397
42 1 5.0082 -0.3501 -2.6133
43 1 2.9054 0.1553 -4.2213
44 1 3.2838 1.3070 -2.9020
45 1 1.0600 -0.7215 -3.0941
46 1 1.0843 0.8551 -2.2542
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385280384.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:00:52
Heat of formation + Delta-G solvation = -67.723584 kcal
Electronic energy + Delta-G solvation = -21856.589845 eV
Core-core repulsion = 18780.045155 eV
Total energy + Delta-G solvation = -3076.544690 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-40.98419 -38.77151 -36.30950 -35.78583 -34.82796 -31.44565 -29.79550 -29.42232
-28.45914 -27.93418 -24.64886 -24.49325 -24.17006 -22.67070 -21.37228 -19.41347
-18.61538 -17.63025 -17.47937 -16.93463 -16.62942 -16.41488 -15.95922 -15.73417
-15.21922 -15.11140 -14.91602 -14.60177 -14.07326 -13.85569 -13.39542 -13.23900
-13.12469 -13.06338 -12.77021 -12.67660 -12.58530 -12.48675 -12.41054 -12.24770
-11.97085 -11.91927 -11.80259 -11.66060 -11.35946 -11.27318 -11.15300 -10.85745
-10.21226 -9.23390 -9.06163 -8.30993 -6.43243 1.39984 1.43146 1.55267
2.35525 2.97261 3.02820 3.24340 3.32614 3.74336 3.77388 3.99212
4.19850 4.26720 4.32989 4.35300 4.41309 4.49015 4.50773 4.56780
4.62640 4.64564 4.72741 4.77917 4.80805 4.84069 4.88522 4.90722
4.96689 5.01819 5.03417 5.09198 5.13244 5.19676 5.23356 5.27069
5.52654 5.55791 5.57496 5.97150 6.14304 6.22025 6.34270 6.53954
6.55860 6.83446 7.28605 8.81552
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.023828 B = 0.003925 C = 0.003600
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1174.785169 B = 7132.441770 C = 7775.819454
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 N -0.549 5.549
3 C 0.023 3.977
4 C 0.114 3.886
5 C 0.077 3.923
6 N -0.684 5.684
7 C 0.075 3.925
8 C 0.056 3.944
9 O -0.408 6.408
10 C 0.212 3.788
11 C -0.546 4.546
12 H 0.061 0.939
13 C 0.006 3.994
14 N -0.931 5.931
15 Si 0.983 3.017
16 H -0.267 1.267
17 H -0.274 1.274
18 H -0.264 1.264
19 C -0.108 4.108
20 C -0.120 4.120
21 C -0.115 4.115
22 C -0.149 4.149
23 H 0.050 0.950
24 H 0.038 0.962
25 H 0.067 0.933
26 H 0.064 0.936
27 H 0.071 0.929
28 H 0.039 0.961
29 H 0.023 0.977
30 H 0.082 0.918
31 H 0.349 0.651
32 H 0.027 0.973
33 H 0.103 0.897
34 H 0.047 0.953
35 H 0.041 0.959
36 H -0.016 1.016
37 H -0.017 1.017
38 H 0.271 0.729
39 H 0.066 0.934
40 H 0.065 0.935
41 H 0.068 0.932
42 H 0.074 0.926
43 H 0.074 0.926
44 H 0.066 0.934
45 H 0.068 0.932
46 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.108 11.452 -20.725 23.882
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.272 5.272
3 C -0.125 4.125
4 C 0.024 3.976
5 C -0.053 4.053
6 N -0.317 5.317
7 C -0.055 4.055
8 C -0.021 4.021
9 O -0.328 6.328
10 C 0.137 3.863
11 C -0.583 4.583
12 H 0.080 0.920
13 C -0.192 4.192
14 N -0.571 5.571
15 Si 0.806 3.194
16 H -0.192 1.192
17 H -0.199 1.199
18 H -0.189 1.189
19 C -0.146 4.146
20 C -0.158 4.158
21 C -0.152 4.152
22 C -0.188 4.188
23 H 0.069 0.931
24 H 0.056 0.944
25 H 0.085 0.915
26 H 0.083 0.917
27 H 0.090 0.910
28 H 0.057 0.943
29 H 0.041 0.959
30 H 0.101 0.899
31 H 0.168 0.832
32 H 0.045 0.955
33 H 0.121 0.879
34 H 0.065 0.935
35 H 0.059 0.941
36 H 0.002 0.998
37 H 0.001 0.999
38 H 0.079 0.921
39 H 0.084 0.916
40 H 0.083 0.917
41 H 0.086 0.914
42 H 0.092 0.908
43 H 0.093 0.907
44 H 0.085 0.915
45 H 0.087 0.913
46 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 3.834 11.110 -20.318 23.473
hybrid contribution -1.470 0.216 0.356 1.528
sum 2.364 11.325 -19.962 23.072
Atomic orbital electron populations
1.22358 0.87825 1.01612 1.00581 1.62061 1.07552 1.14560 1.43040
1.22453 1.01139 0.88223 1.00661 1.21789 0.95708 0.92001 0.88057
1.22058 0.97312 0.94035 0.91880 1.60398 1.63573 1.02115 1.05566
1.21911 0.98192 0.90584 0.94789 1.22586 0.94821 0.95704 0.89003
1.87757 1.65780 1.61745 1.17500 1.19771 0.94613 0.92758 0.79115
1.21376 1.24892 1.19471 0.92610 0.92047 1.25961 0.97204 0.96167
0.99893 1.70076 1.39583 1.31062 1.16359 0.85184 0.78248 0.78849
0.77131 1.19247 1.19915 1.18868 1.22405 0.92845 1.02326 0.97018
1.22505 0.99122 0.99494 0.94702 1.22281 0.93867 0.99203 0.99890
1.22788 0.98845 1.00519 0.96686 0.93120 0.94403 0.91461 0.91682
0.91039 0.94303 0.95935 0.89931 0.83173 0.95464 0.87910 0.93508
0.94059 0.99802 0.99935 0.92066 0.91570 0.91673 0.91366 0.90778
0.90692 0.91497 0.91297 0.91513
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.58 8.55 127.69 1.09 1.67 16
2 N -0.55 -13.45 4.15 -894.57 -3.72 -17.16 16
3 C 0.02 0.46 8.96 127.69 1.14 1.61 16
4 C 0.11 2.48 0.37 4.26 0.00 2.48 16
5 C 0.08 1.85 3.70 86.30 0.32 2.17 16
6 N -0.68 -21.10 5.87 -513.89 -3.01 -24.11 16
7 C 0.07 2.29 6.10 86.30 0.53 2.81 16
8 C 0.06 2.19 6.28 71.98 0.45 2.64 16
9 O -0.41 -20.56 9.84 -148.98 -1.47 -22.02 16
10 C 0.21 12.36 5.69 71.24 0.41 12.77 16
11 C -0.55 -33.31 9.43 25.60 0.24 -33.07 16
12 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16
13 C 0.01 0.36 5.46 84.65 0.46 0.82 16
14 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16
15 Si 0.98 45.18 29.54 68.60 2.03 47.20 16
16 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16
17 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16
18 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16
19 C -0.11 -2.33 5.78 31.70 0.18 -2.15 16
20 C -0.12 -1.93 6.91 31.91 0.22 -1.71 16
21 C -0.11 -1.63 6.83 31.67 0.22 -1.42 16
22 C -0.15 -2.54 4.86 31.32 0.15 -2.39 16
23 H 0.05 1.38 6.17 -2.39 -0.01 1.37 16
24 H 0.04 0.77 6.61 -2.39 -0.02 0.75 16
25 H 0.07 1.57 7.97 -2.39 -0.02 1.55 16
26 H 0.06 1.30 8.00 -2.38 -0.02 1.28 16
27 H 0.07 1.43 6.04 -2.38 -0.01 1.42 16
28 H 0.04 0.67 6.09 -2.39 -0.01 0.66 16
29 H 0.02 0.55 6.82 -2.39 -0.02 0.54 16
30 H 0.08 1.77 8.13 -2.38 -0.02 1.75 16
31 H 0.35 12.84 6.84 -89.69 -0.61 12.22 16
32 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16
33 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16
34 H 0.05 1.73 8.14 -2.38 -0.02 1.72 16
35 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16
36 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16
37 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16
38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16
39 H 0.07 1.47 5.72 -2.39 -0.01 1.46 16
40 H 0.06 1.69 7.42 -2.39 -0.02 1.67 16
41 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16
42 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16
43 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16
44 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16
45 H 0.07 1.13 7.67 -2.39 -0.02 1.11 16
46 H 0.07 1.15 5.18 -2.39 -0.01 1.14 16
Total: -1.00 -66.33 349.12 -0.14 -66.48
By element:
Atomic # 1 Polarization: 19.91 SS G_CDS: 0.32 Total: 20.24 kcal
Atomic # 6 Polarization: -19.18 SS G_CDS: 5.42 Total: -13.76 kcal
Atomic # 7 Polarization: -91.69 SS G_CDS: -6.44 Total: -98.13 kcal
Atomic # 8 Polarization: -20.56 SS G_CDS: -1.47 Total: -22.02 kcal
Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal
Total: -66.33 -0.14 -66.48 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385280384.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.247 kcal
(2) G-P(sol) polarization free energy of solvation -66.333 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.579 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.144 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.477 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.724 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds