Wall clock time and date at job start Mon Mar 30 2020 04:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47410 * 2 1 4 4 C 1.46902 * 110.99778 * 76.21547 * 3 2 1 5 5 C 1.52999 * 109.47253 * 200.66072 * 4 3 2 6 6 O 1.42900 * 109.47036 * 63.95852 * 5 4 3 7 7 C 1.42904 * 114.00134 * 175.14480 * 6 5 4 8 8 C 1.50694 * 109.46986 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00311 * 359.72399 * 8 7 6 10 10 C 1.37881 * 119.99903 * 179.97438 * 8 7 6 11 11 N 1.31520 * 119.99828 * 359.72391 * 10 8 7 12 12 Si 1.86796 * 120.00209 * 179.72742 * 10 8 7 13 13 H 1.48496 * 109.47489 * 89.99929 * 12 10 8 14 14 H 1.48501 * 109.47027 * 210.00078 * 12 10 8 15 15 H 1.48503 * 109.46984 * 329.99921 * 12 10 8 16 16 C 1.46902 * 111.00363 * 200.16971 * 3 2 1 17 17 C 1.52995 * 109.47175 * 66.04671 * 16 3 2 18 18 H 1.09005 * 109.50465 * 305.00272 * 17 16 3 19 19 C 1.53117 * 109.50648 * 184.92150 * 17 16 3 20 20 C 1.53121 * 109.16343 * 182.40541 * 19 17 16 21 21 C 1.53031 * 109.27623 * 57.65512 * 20 19 17 22 22 N 1.46851 * 109.52563 * 300.81960 * 21 20 19 23 23 C 1.46844 * 111.23165 * 61.72219 * 22 21 20 24 24 H 1.09000 * 109.47194 * 302.02451 * 1 2 3 25 25 H 1.09005 * 109.46779 * 62.02264 * 1 2 3 26 26 H 1.09001 * 109.47290 * 182.01692 * 1 2 3 27 27 H 1.09008 * 109.47115 * 240.00086 * 2 1 3 28 28 H 1.08995 * 109.47433 * 120.00649 * 2 1 3 29 29 H 1.09003 * 109.46744 * 80.65979 * 4 3 2 30 30 H 1.09004 * 109.46623 * 320.66309 * 4 3 2 31 31 H 1.09001 * 109.46928 * 303.95812 * 5 4 3 32 32 H 1.09000 * 109.47222 * 183.95642 * 5 4 3 33 33 H 1.08996 * 109.47156 * 59.99740 * 7 6 5 34 34 H 1.09005 * 109.46418 * 299.99718 * 7 6 5 35 35 H 0.96993 * 119.99819 * 180.02562 * 11 10 8 36 36 H 1.08993 * 109.47129 * 186.04613 * 16 3 2 37 37 H 1.09000 * 109.46653 * 306.04779 * 16 3 2 38 38 H 1.09001 * 109.52343 * 302.31001 * 19 17 16 39 39 H 1.09000 * 109.51833 * 62.43809 * 19 17 16 40 40 H 1.08999 * 109.50479 * 177.59883 * 20 19 17 41 41 H 1.09006 * 109.50034 * 297.67319 * 20 19 17 42 42 H 1.08999 * 109.46596 * 60.83668 * 21 20 19 43 43 H 1.09003 * 109.46212 * 180.82024 * 21 20 19 44 44 H 1.00899 * 110.99885 * 185.84178 * 22 21 20 45 45 H 1.09000 * 109.49707 * 178.27956 * 23 22 21 46 46 H 1.08999 * 109.42756 * 58.31548 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8871 1.9902 1.3320 5 6 1.9038 3.5147 1.2034 6 8 0.7635 3.9422 0.4558 7 6 0.6235 5.3617 0.3699 8 6 -0.6044 5.6975 -0.4365 9 1 -1.2143 4.9061 -0.8466 10 6 -0.9466 7.0152 -0.6552 11 7 -0.2042 7.9789 -0.1553 12 14 -2.4644 7.4315 -1.6612 13 1 -3.6416 7.5341 -0.7619 14 1 -2.2576 8.7277 -2.3558 15 1 -2.7006 6.3637 -2.6658 16 6 3.4089 1.4522 -0.4729 17 6 3.4662 1.0460 -1.9468 18 1 3.0121 0.0629 -2.0712 19 6 4.9256 0.9970 -2.4073 20 6 4.9710 0.6486 -3.8977 21 6 4.1659 1.6859 -4.6837 22 7 2.7771 1.6936 -4.2065 23 6 2.7038 2.0711 -2.7894 24 1 -0.3633 0.5449 0.8713 25 1 -0.3633 0.4821 -0.9076 26 1 -0.3634 -1.0270 0.0362 27 1 1.8933 -0.5139 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.7175 1.6695 1.9610 30 1 0.9464 1.6738 1.7827 31 1 2.8130 3.8260 0.6892 32 1 1.8762 3.9634 2.1964 33 1 1.5031 5.7849 -0.1150 34 1 0.5255 5.7783 1.3724 35 1 -0.4451 8.9058 -0.3088 36 1 3.7816 2.4704 -0.3619 37 1 4.0262 0.7732 0.1154 38 1 5.3913 1.9692 -2.2462 39 1 5.4618 0.2375 -1.8382 40 1 6.0054 0.6541 -4.2413 41 1 4.5411 -0.3409 -4.0533 42 1 4.6053 2.6728 -4.5385 43 1 4.1841 1.4325 -5.7437 44 1 2.2037 2.3009 -4.7726 45 1 1.6609 2.0975 -2.4734 46 1 3.1494 3.0565 -2.6532 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395346863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:41 Heat of formation + Delta-G solvation = -57.747799 kcal Electronic energy + Delta-G solvation = -22016.291807 eV Core-core repulsion = 18940.179700 eV Total energy + Delta-G solvation = -3076.112107 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.17227 -37.46847 -36.03675 -32.73448 -32.51549 -31.35274 -30.80083 -28.30821 -26.68982 -24.87203 -23.59833 -22.53577 -22.16901 -21.78869 -20.08969 -19.36423 -16.49584 -16.36779 -15.76477 -15.49215 -15.16131 -14.84523 -14.46662 -14.23534 -14.12966 -13.72921 -13.62766 -13.18438 -12.97893 -12.77208 -12.47378 -12.24049 -11.83563 -11.75496 -11.57284 -11.38757 -11.20764 -10.99415 -10.88358 -10.78699 -10.67514 -10.41861 -10.26438 -10.18404 -10.12220 -9.89679 -9.02356 -8.73034 -8.31120 -8.07870 -7.94968 -6.05763 -4.06336 3.33271 3.38203 3.44052 4.03589 4.31747 4.39964 4.82507 4.88079 4.93222 5.00780 5.09350 5.22312 5.30813 5.35426 5.39459 5.50928 5.59629 5.62370 5.65019 5.72634 5.79850 5.84882 5.85603 5.89639 5.95669 5.97126 6.06517 6.07644 6.13336 6.18506 6.25218 6.38933 6.48043 6.52553 6.62282 7.17586 7.19102 7.37130 7.38495 7.50585 7.51506 7.86506 8.23656 8.70109 9.09301 9.58461 11.05986 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.015029 B = 0.005047 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.625077 B = 5546.197648 C = 6430.597992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 N -0.520 5.520 4 C 0.059 3.941 5 C 0.070 3.930 6 O -0.377 6.377 7 C 0.195 3.805 8 C -0.507 4.507 9 H 0.066 0.934 10 C 0.055 3.945 11 N -0.901 5.901 12 Si 0.905 3.095 13 H -0.279 1.279 14 H -0.286 1.286 15 H -0.271 1.271 16 C 0.059 3.941 17 C -0.078 4.078 18 H 0.077 0.923 19 C -0.117 4.117 20 C -0.114 4.114 21 C 0.056 3.944 22 N -0.694 5.694 23 C 0.070 3.930 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.025 0.975 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.032 0.968 32 H 0.036 0.964 33 H 0.001 0.999 34 H 0.001 0.999 35 H 0.262 0.738 36 H 0.074 0.926 37 H 0.028 0.972 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.027 0.973 43 H 0.068 0.932 44 H 0.344 0.656 45 H 0.095 0.905 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.898 -15.683 -2.950 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 N -0.245 5.245 4 C -0.068 4.068 5 C -0.008 4.008 6 O -0.296 6.296 7 C 0.120 3.880 8 C -0.546 4.546 9 H 0.084 0.916 10 C -0.146 4.146 11 N -0.541 5.541 12 Si 0.733 3.267 13 H -0.205 1.205 14 H -0.212 1.212 15 H -0.196 1.196 16 C -0.069 4.069 17 C -0.097 4.097 18 H 0.095 0.905 19 C -0.156 4.156 20 C -0.152 4.152 21 C -0.074 4.074 22 N -0.325 5.325 23 C -0.058 4.058 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.046 0.954 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.045 0.955 43 H 0.086 0.914 44 H 0.161 0.839 45 H 0.113 0.887 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 9.472 -16.009 -3.222 18.878 hybrid contribution 0.237 1.207 0.221 1.250 sum 9.708 -14.802 -3.002 17.954 Atomic orbital electron populations 1.21733 0.94720 1.00330 1.03380 1.22122 0.96552 0.89048 1.00034 1.61867 1.19677 1.17320 1.25595 1.22178 1.00867 0.94721 0.89079 1.22205 0.90815 0.92931 0.94862 1.87947 1.43236 1.25523 1.72913 1.20150 0.96602 0.75590 0.95656 1.21056 1.09207 0.91986 1.32323 0.91553 1.24942 0.97438 0.95925 0.96262 1.69969 1.38793 0.99681 1.45625 0.86375 0.82513 0.77693 0.80148 1.20528 1.21195 1.19598 1.22172 0.88945 1.01080 0.94731 1.21193 0.94822 1.00164 0.93508 0.90480 1.21622 0.96614 1.01361 0.95970 1.21538 0.99024 0.99601 0.95025 1.21900 0.89435 0.97471 0.98606 1.60303 1.09409 1.58389 1.04400 1.21883 1.02424 0.95263 0.86271 0.92492 0.91547 0.93240 0.90865 0.95682 0.94432 0.90161 0.94975 0.94606 0.98161 0.98155 0.92800 0.90724 0.95397 0.92259 0.92244 0.92034 0.91414 0.95479 0.91359 0.83870 0.88655 0.95380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 10.05 37.16 0.37 -1.53 16 2 C 0.05 0.64 5.54 -3.82 -0.02 0.62 16 3 N -0.52 -7.70 3.76 -234.63 -0.88 -8.59 16 4 C 0.06 0.91 5.20 -3.82 -0.02 0.89 16 5 C 0.07 1.32 6.14 37.16 0.23 1.55 16 6 O -0.38 -9.17 10.26 -35.23 -0.36 -9.53 16 7 C 0.19 5.42 5.69 36.00 0.20 5.62 16 8 C -0.51 -15.10 9.43 -34.44 -0.32 -15.42 16 9 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 10 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 12 Si 0.91 22.12 29.54 -169.99 -5.02 17.10 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 C 0.06 0.78 4.17 -3.83 -0.02 0.77 16 17 C -0.08 -0.98 2.29 -90.54 -0.21 -1.19 16 18 H 0.08 0.99 6.08 -51.93 -0.32 0.68 16 19 C -0.12 -1.27 5.29 -26.61 -0.14 -1.41 16 20 C -0.11 -1.16 6.09 -26.65 -0.16 -1.32 16 21 C 0.06 0.62 6.55 -3.83 -0.03 0.59 16 22 N -0.69 -9.04 6.84 -113.82 -0.78 -9.82 16 23 C 0.07 1.04 5.71 -3.83 -0.02 1.01 16 24 H 0.06 0.81 6.75 -51.93 -0.35 0.46 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.88 5.81 -51.92 -0.30 0.58 16 28 H 0.02 0.29 7.99 -51.93 -0.42 -0.12 16 29 H 0.04 0.49 7.99 -51.93 -0.41 0.08 16 30 H 0.08 1.24 6.49 -51.93 -0.34 0.90 16 31 H 0.03 0.60 6.74 -51.93 -0.35 0.25 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.00 0.02 8.14 -51.93 -0.42 -0.41 16 34 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.07 1.08 6.64 -51.93 -0.34 0.73 16 37 H 0.03 0.33 8.12 -51.93 -0.42 -0.09 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.34 4.28 8.90 -39.29 -0.35 3.93 16 45 H 0.10 1.65 7.78 -51.93 -0.40 1.25 16 46 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 355.74 15.07 5.36 5.36 Total: -1.00 -31.02 355.74 -9.80 -40.82 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -8.62 Total: -0.47 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -0.23 Total: -8.31 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.93 Total: -44.97 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.36 Total: -9.53 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.02 -9.80 -40.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395346863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.926 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds