Wall clock time and date at job start Mon Mar 30 2020 05:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00360 * 2 1 4 4 C 1.46906 * 110.99755 * 123.95384 * 2 1 3 5 5 C 1.53002 * 109.47053 * 66.04236 * 4 2 1 6 6 C 1.52996 * 109.46891 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46891 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.50573 * 55.00608 * 7 6 5 9 9 C 1.53107 * 109.50722 * 175.08665 * 7 6 5 10 10 N 1.47005 * 109.26007 * 176.78653 * 9 7 6 11 11 C 1.46897 * 111.00022 * 177.61031 * 10 9 7 12 12 C 1.53004 * 109.47206 * 169.99968 * 11 10 9 13 13 C 1.50694 * 109.47256 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99936 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00038 * 179.97438 * 13 12 11 16 16 N 1.31521 * 120.00202 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 120.00092 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47413 * 89.99919 * 17 15 13 19 19 H 1.48501 * 109.47384 * 210.00056 * 17 15 13 20 20 H 1.48496 * 109.47290 * 329.99939 * 17 15 13 21 21 C 1.47016 * 110.75049 * 301.38421 * 10 9 7 22 22 C 1.53096 * 109.25712 * 58.61876 * 21 10 9 23 23 O 1.43010 * 109.50796 * 294.91432 * 7 6 5 24 24 H 1.08995 * 109.47046 * 296.04847 * 1 2 3 25 25 H 1.09008 * 109.46903 * 56.04730 * 1 2 3 26 26 H 1.08999 * 109.47457 * 176.04446 * 1 2 3 27 27 H 1.08998 * 109.47331 * 183.95016 * 3 2 1 28 28 H 1.09003 * 109.47294 * 303.95365 * 3 2 1 29 29 H 1.09006 * 109.47438 * 63.95296 * 3 2 1 30 30 H 1.08992 * 109.47459 * 186.04319 * 4 2 1 31 31 H 1.09004 * 109.47040 * 306.04470 * 4 2 1 32 32 H 1.09001 * 109.47142 * 300.00160 * 5 4 2 33 33 H 1.09004 * 109.47006 * 60.00213 * 5 4 2 34 34 H 1.09001 * 109.47372 * 300.00036 * 6 5 4 35 35 H 1.08996 * 109.47261 * 60.00575 * 6 5 4 36 36 H 1.08996 * 109.50293 * 296.72184 * 9 7 6 37 37 H 1.09002 * 109.50343 * 56.85014 * 9 7 6 38 38 H 1.08995 * 109.47254 * 289.99423 * 11 10 9 39 39 H 1.08999 * 109.47338 * 49.99931 * 11 10 9 40 40 H 1.09002 * 109.47195 * 300.00093 * 12 11 10 41 41 H 1.08999 * 109.47002 * 59.99757 * 12 11 10 42 42 H 0.96999 * 120.00057 * 180.02562 * 16 15 13 43 43 H 1.09002 * 109.50721 * 178.54746 * 21 10 9 44 44 H 1.08995 * 109.51244 * 298.67942 * 21 10 9 45 45 H 1.09000 * 109.50978 * 63.08389 * 22 21 10 46 46 H 1.09004 * 109.50516 * 183.17231 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6313 -2.2426 0.9704 6 6 2.1801 -3.0405 2.1549 7 6 1.8154 -4.5170 1.9880 8 1 2.1726 -4.8731 1.0218 9 6 2.4672 -5.3342 3.1067 10 7 2.0513 -6.7391 2.9864 11 6 2.7006 -7.5698 4.0093 12 6 2.0636 -8.9609 4.0165 13 6 2.7301 -9.8132 5.0653 14 1 3.5279 -9.4036 5.6670 15 6 2.3206 -11.1156 5.2576 16 7 2.9019 -11.8594 6.1734 17 14 0.9401 -11.8239 4.2175 18 1 1.5100 -12.4456 2.9952 19 1 0.2078 -12.8517 5.0001 20 1 0.0048 -10.7375 3.8301 21 6 0.5879 -6.8574 3.0627 22 6 -0.0449 -6.0251 1.9444 23 8 0.3951 -4.6690 2.0577 24 1 -0.3633 0.4513 0.9232 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0828 1.3431 -0.0708 28 1 1.5899 1.9163 -0.8524 29 1 1.7045 1.8723 0.9233 30 1 3.0796 -0.6612 1.1757 31 1 1.5610 -0.3872 2.0629 32 1 0.5470 -2.3474 0.9324 33 1 2.0657 -2.6214 0.0452 34 1 3.2644 -2.9356 2.1925 35 1 1.7461 -2.6619 3.0803 36 1 3.5518 -5.2672 3.0219 37 1 2.1522 -4.9429 4.0741 38 1 3.7635 -7.6582 3.7846 39 1 2.5734 -7.1069 4.9879 40 1 1.0006 -8.8726 4.2411 41 1 2.1908 -9.4238 3.0379 42 1 2.6141 -12.7758 6.3083 43 1 0.3006 -7.9024 2.9456 44 1 0.2428 -6.4906 4.0293 45 1 0.2575 -6.4255 0.9768 46 1 -1.1308 -6.0645 2.0313 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595907007.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:13 Heat of formation + Delta-G solvation = -47.914371 kcal Electronic energy + Delta-G solvation = -21117.663303 eV Core-core repulsion = 18041.977605 eV Total energy + Delta-G solvation = -3075.685698 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.59397 -37.97338 -36.00949 -34.14822 -32.91756 -30.84547 -30.23130 -27.94371 -27.76063 -26.00032 -23.73805 -23.66823 -21.96176 -20.93288 -20.42344 -19.59322 -17.03480 -16.52080 -15.96781 -15.76606 -15.56456 -15.08407 -14.80560 -14.60083 -14.50079 -14.10960 -13.98617 -13.43607 -13.00928 -12.70292 -12.63192 -12.53130 -12.28412 -12.07630 -11.94859 -11.75890 -11.55489 -11.36153 -11.07097 -11.00442 -10.88682 -10.67620 -10.37516 -10.19072 -9.85252 -9.79377 -9.35406 -9.17607 -8.67159 -8.56338 -7.92199 -6.07319 -4.05835 3.29480 3.36568 3.39020 3.63146 3.83162 4.21259 4.42536 4.65142 4.81600 4.83225 4.98041 5.02972 5.13322 5.20490 5.23955 5.27468 5.28347 5.34799 5.37311 5.42693 5.48223 5.52100 5.56616 5.64168 5.68064 5.72524 5.80894 5.98324 6.01780 6.12778 6.13856 6.22275 6.24306 6.29710 6.68272 6.71458 6.73787 7.06429 7.24717 7.28927 7.46725 7.53650 7.80015 8.49680 8.96456 9.54580 11.06003 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.050561 B = 0.002924 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.657554 B = 9574.506056 C = 9994.464751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.024 3.976 4 C 0.054 3.946 5 C -0.112 4.112 6 C -0.109 4.109 7 C 0.096 3.904 8 H 0.065 0.935 9 C 0.024 3.976 10 N -0.541 5.541 11 C 0.070 3.930 12 C -0.014 4.014 13 C -0.522 4.522 14 H 0.071 0.929 15 C 0.067 3.933 16 N -0.902 5.902 17 Si 0.882 3.118 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.266 1.266 21 C 0.013 3.987 22 C 0.065 3.935 23 O -0.385 6.385 24 H 0.024 0.976 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.023 0.977 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.027 0.973 40 H 0.018 0.982 41 H 0.020 0.980 42 H 0.263 0.737 43 H 0.095 0.905 44 H 0.039 0.961 45 H 0.056 0.944 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.544 22.982 -11.774 26.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.273 5.273 3 C -0.125 4.125 4 C -0.074 4.074 5 C -0.150 4.150 6 C -0.148 4.148 7 C 0.038 3.962 8 H 0.083 0.917 9 C -0.105 4.105 10 N -0.266 5.266 11 C -0.056 4.056 12 C -0.051 4.051 13 C -0.560 4.560 14 H 0.089 0.911 15 C -0.134 4.134 16 N -0.541 5.541 17 Si 0.710 3.290 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.191 1.191 21 C -0.115 4.115 22 C -0.012 4.012 23 O -0.304 6.304 24 H 0.043 0.957 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.046 0.954 40 H 0.036 0.964 41 H 0.039 0.961 42 H 0.073 0.927 43 H 0.113 0.887 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.357 22.562 -12.554 26.185 hybrid contribution -0.986 -0.121 1.194 1.554 sum -5.344 22.441 -11.360 25.714 Atomic orbital electron populations 1.22448 0.87346 1.02750 1.00215 1.61988 1.08165 1.13616 1.43507 1.22380 1.00772 0.88950 1.00350 1.22201 1.00000 0.94217 0.90998 1.21529 1.02074 0.92960 0.98409 1.21544 1.00992 0.93019 0.99213 1.22132 0.81384 0.94612 0.98066 0.91664 1.22757 1.00671 0.89357 0.97721 1.62368 1.06417 1.07033 1.50767 1.22151 0.98646 0.94229 0.90596 1.19703 0.96143 0.91767 0.97505 1.21053 1.19920 0.96514 1.18516 0.91072 1.25010 0.96455 0.96908 0.95054 1.69914 1.42204 1.08616 1.33398 0.86742 0.82786 0.78978 0.80534 1.20173 1.21412 1.19113 1.22853 0.88909 1.01891 0.97854 1.22678 0.98719 0.81690 0.98084 1.87912 1.21610 1.26475 1.94401 0.95726 0.91622 0.90721 0.91368 0.91464 0.95798 0.90855 0.94876 0.91061 0.91202 0.90442 0.91343 0.90073 0.94430 0.91144 0.95444 0.96408 0.96122 0.92684 0.88678 0.94305 0.92561 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.32 60.07 0.56 0.73 16 2 N -0.55 -4.88 5.02 -251.26 -1.26 -6.14 16 3 C 0.02 0.17 9.57 60.06 0.57 0.74 16 4 C 0.05 0.47 4.96 -3.82 -0.02 0.45 16 5 C -0.11 -1.07 5.04 -26.73 -0.13 -1.21 16 6 C -0.11 -1.10 4.93 -26.73 -0.13 -1.24 16 7 C 0.10 1.23 2.80 -26.67 -0.07 1.15 16 8 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 9 C 0.02 0.35 4.91 -3.71 -0.02 0.33 16 10 N -0.54 -9.53 4.88 -234.31 -1.14 -10.68 16 11 C 0.07 1.44 5.22 -3.82 -0.02 1.42 16 12 C -0.01 -0.33 3.31 -27.88 -0.09 -0.42 16 13 C -0.52 -14.92 9.66 -34.44 -0.33 -15.26 16 14 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 17 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 21 C 0.01 0.22 4.94 -3.71 -0.02 0.20 16 22 C 0.07 0.90 7.01 37.21 0.26 1.16 16 23 O -0.38 -5.44 10.01 -35.23 -0.35 -5.80 16 24 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.06 0.46 8.12 -51.92 -0.42 0.03 16 26 H 0.07 0.63 6.47 -51.93 -0.34 0.29 16 27 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 28 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.59 8.06 -51.93 -0.42 0.17 16 31 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 32 H 0.07 0.76 6.24 -51.93 -0.32 0.44 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.03 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.02 0.43 5.33 -51.93 -0.28 0.15 16 41 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 43 H 0.10 1.69 6.05 -51.93 -0.31 1.37 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 353.50 15.07 5.33 5.33 Total: -1.00 -31.02 353.50 -9.70 -40.71 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -8.83 Total: -3.33 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 0.46 Total: -10.07 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: -1.63 Total: -43.93 kcal Atomic # 8 Polarization: -5.44 SS G_CDS: -0.35 Total: -5.80 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.02 -9.70 -40.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595907007.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.202 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds