Wall clock time and date at job start Mon Mar 30 2020 05:01:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.46893 * 111.00360 * 2 1
4 4 C 1.46906 * 110.99755 * 123.95384 * 2 1 3
5 5 C 1.53002 * 109.47053 * 66.04236 * 4 2 1
6 6 C 1.52996 * 109.46891 * 179.97438 * 5 4 2
7 7 C 1.53002 * 109.46891 * 179.97438 * 6 5 4
8 8 H 1.08997 * 109.50573 * 55.00608 * 7 6 5
9 9 C 1.53107 * 109.50722 * 175.08665 * 7 6 5
10 10 N 1.47005 * 109.26007 * 176.78653 * 9 7 6
11 11 C 1.46897 * 111.00022 * 177.61031 * 10 9 7
12 12 C 1.53004 * 109.47206 * 169.99968 * 11 10 9
13 13 C 1.50694 * 109.47256 * 179.97438 * 12 11 10
14 14 H 1.07999 * 119.99936 * 0.02562 * 13 12 11
15 15 C 1.37876 * 120.00038 * 179.97438 * 13 12 11
16 16 N 1.31521 * 120.00202 * 180.02562 * 15 13 12
17 17 Si 1.86796 * 120.00092 * 0.02562 * 15 13 12
18 18 H 1.48503 * 109.47413 * 89.99919 * 17 15 13
19 19 H 1.48501 * 109.47384 * 210.00056 * 17 15 13
20 20 H 1.48496 * 109.47290 * 329.99939 * 17 15 13
21 21 C 1.47016 * 110.75049 * 301.38421 * 10 9 7
22 22 C 1.53096 * 109.25712 * 58.61876 * 21 10 9
23 23 O 1.43010 * 109.50796 * 294.91432 * 7 6 5
24 24 H 1.08995 * 109.47046 * 296.04847 * 1 2 3
25 25 H 1.09008 * 109.46903 * 56.04730 * 1 2 3
26 26 H 1.08999 * 109.47457 * 176.04446 * 1 2 3
27 27 H 1.08998 * 109.47331 * 183.95016 * 3 2 1
28 28 H 1.09003 * 109.47294 * 303.95365 * 3 2 1
29 29 H 1.09006 * 109.47438 * 63.95296 * 3 2 1
30 30 H 1.08992 * 109.47459 * 186.04319 * 4 2 1
31 31 H 1.09004 * 109.47040 * 306.04470 * 4 2 1
32 32 H 1.09001 * 109.47142 * 300.00160 * 5 4 2
33 33 H 1.09004 * 109.47006 * 60.00213 * 5 4 2
34 34 H 1.09001 * 109.47372 * 300.00036 * 6 5 4
35 35 H 1.08996 * 109.47261 * 60.00575 * 6 5 4
36 36 H 1.08996 * 109.50293 * 296.72184 * 9 7 6
37 37 H 1.09002 * 109.50343 * 56.85014 * 9 7 6
38 38 H 1.08995 * 109.47254 * 289.99423 * 11 10 9
39 39 H 1.08999 * 109.47338 * 49.99931 * 11 10 9
40 40 H 1.09002 * 109.47195 * 300.00093 * 12 11 10
41 41 H 1.08999 * 109.47002 * 59.99757 * 12 11 10
42 42 H 0.96999 * 120.00057 * 180.02562 * 16 15 13
43 43 H 1.09002 * 109.50721 * 178.54746 * 21 10 9
44 44 H 1.08995 * 109.51244 * 298.67942 * 21 10 9
45 45 H 1.09000 * 109.50978 * 63.08389 * 22 21 10
46 46 H 1.09004 * 109.50516 * 183.17231 * 22 21 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3713 0.0000
4 6 1.9954 -0.7660 1.1376
5 6 1.6313 -2.2426 0.9704
6 6 2.1801 -3.0405 2.1549
7 6 1.8154 -4.5170 1.9880
8 1 2.1726 -4.8731 1.0218
9 6 2.4672 -5.3342 3.1067
10 7 2.0513 -6.7391 2.9864
11 6 2.7006 -7.5698 4.0093
12 6 2.0636 -8.9609 4.0165
13 6 2.7301 -9.8132 5.0653
14 1 3.5279 -9.4036 5.6670
15 6 2.3206 -11.1156 5.2576
16 7 2.9019 -11.8594 6.1734
17 14 0.9401 -11.8239 4.2175
18 1 1.5100 -12.4456 2.9952
19 1 0.2078 -12.8517 5.0001
20 1 0.0048 -10.7375 3.8301
21 6 0.5879 -6.8574 3.0627
22 6 -0.0449 -6.0251 1.9444
23 8 0.3951 -4.6690 2.0577
24 1 -0.3633 0.4513 0.9232
25 1 -0.3633 0.5740 -0.8525
26 1 -0.3634 -1.0252 -0.0709
27 1 3.0828 1.3431 -0.0708
28 1 1.5899 1.9163 -0.8524
29 1 1.7045 1.8723 0.9233
30 1 3.0796 -0.6612 1.1757
31 1 1.5610 -0.3872 2.0629
32 1 0.5470 -2.3474 0.9324
33 1 2.0657 -2.6214 0.0452
34 1 3.2644 -2.9356 2.1925
35 1 1.7461 -2.6619 3.0803
36 1 3.5518 -5.2672 3.0219
37 1 2.1522 -4.9429 4.0741
38 1 3.7635 -7.6582 3.7846
39 1 2.5734 -7.1069 4.9879
40 1 1.0006 -8.8726 4.2411
41 1 2.1908 -9.4238 3.0379
42 1 2.6141 -12.7758 6.3083
43 1 0.3006 -7.9024 2.9456
44 1 0.2428 -6.4906 4.0293
45 1 0.2575 -6.4255 0.9768
46 1 -1.1308 -6.0645 2.0313
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000595907007.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:01:13
Heat of formation + Delta-G solvation = -47.914371 kcal
Electronic energy + Delta-G solvation = -21117.663303 eV
Core-core repulsion = 18041.977605 eV
Total energy + Delta-G solvation = -3075.685698 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-39.59397 -37.97338 -36.00949 -34.14822 -32.91756 -30.84547 -30.23130 -27.94371
-27.76063 -26.00032 -23.73805 -23.66823 -21.96176 -20.93288 -20.42344 -19.59322
-17.03480 -16.52080 -15.96781 -15.76606 -15.56456 -15.08407 -14.80560 -14.60083
-14.50079 -14.10960 -13.98617 -13.43607 -13.00928 -12.70292 -12.63192 -12.53130
-12.28412 -12.07630 -11.94859 -11.75890 -11.55489 -11.36153 -11.07097 -11.00442
-10.88682 -10.67620 -10.37516 -10.19072 -9.85252 -9.79377 -9.35406 -9.17607
-8.67159 -8.56338 -7.92199 -6.07319 -4.05835 3.29480 3.36568 3.39020
3.63146 3.83162 4.21259 4.42536 4.65142 4.81600 4.83225 4.98041
5.02972 5.13322 5.20490 5.23955 5.27468 5.28347 5.34799 5.37311
5.42693 5.48223 5.52100 5.56616 5.64168 5.68064 5.72524 5.80894
5.98324 6.01780 6.12778 6.13856 6.22275 6.24306 6.29710 6.68272
6.71458 6.73787 7.06429 7.24717 7.28927 7.46725 7.53650 7.80015
8.49680 8.96456 9.54580 11.06003
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.050561 B = 0.002924 C = 0.002801
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 553.657554 B = 9574.506056 C = 9994.464751
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 N -0.549 5.549
3 C 0.024 3.976
4 C 0.054 3.946
5 C -0.112 4.112
6 C -0.109 4.109
7 C 0.096 3.904
8 H 0.065 0.935
9 C 0.024 3.976
10 N -0.541 5.541
11 C 0.070 3.930
12 C -0.014 4.014
13 C -0.522 4.522
14 H 0.071 0.929
15 C 0.067 3.933
16 N -0.902 5.902
17 Si 0.882 3.118
18 H -0.276 1.276
19 H -0.288 1.288
20 H -0.266 1.266
21 C 0.013 3.987
22 C 0.065 3.935
23 O -0.385 6.385
24 H 0.024 0.976
25 H 0.065 0.935
26 H 0.074 0.926
27 H 0.068 0.932
28 H 0.067 0.933
29 H 0.023 0.977
30 H 0.073 0.927
31 H 0.033 0.967
32 H 0.071 0.929
33 H 0.069 0.931
34 H 0.077 0.923
35 H 0.068 0.932
36 H 0.081 0.919
37 H 0.037 0.963
38 H 0.070 0.930
39 H 0.027 0.973
40 H 0.018 0.982
41 H 0.020 0.980
42 H 0.263 0.737
43 H 0.095 0.905
44 H 0.039 0.961
45 H 0.056 0.944
46 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.544 22.982 -11.774 26.219
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 N -0.273 5.273
3 C -0.125 4.125
4 C -0.074 4.074
5 C -0.150 4.150
6 C -0.148 4.148
7 C 0.038 3.962
8 H 0.083 0.917
9 C -0.105 4.105
10 N -0.266 5.266
11 C -0.056 4.056
12 C -0.051 4.051
13 C -0.560 4.560
14 H 0.089 0.911
15 C -0.134 4.134
16 N -0.541 5.541
17 Si 0.710 3.290
18 H -0.202 1.202
19 H -0.214 1.214
20 H -0.191 1.191
21 C -0.115 4.115
22 C -0.012 4.012
23 O -0.304 6.304
24 H 0.043 0.957
25 H 0.084 0.916
26 H 0.093 0.907
27 H 0.086 0.914
28 H 0.085 0.915
29 H 0.042 0.958
30 H 0.091 0.909
31 H 0.051 0.949
32 H 0.089 0.911
33 H 0.088 0.912
34 H 0.096 0.904
35 H 0.087 0.913
36 H 0.099 0.901
37 H 0.056 0.944
38 H 0.089 0.911
39 H 0.046 0.954
40 H 0.036 0.964
41 H 0.039 0.961
42 H 0.073 0.927
43 H 0.113 0.887
44 H 0.057 0.943
45 H 0.074 0.926
46 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -4.357 22.562 -12.554 26.185
hybrid contribution -0.986 -0.121 1.194 1.554
sum -5.344 22.441 -11.360 25.714
Atomic orbital electron populations
1.22448 0.87346 1.02750 1.00215 1.61988 1.08165 1.13616 1.43507
1.22380 1.00772 0.88950 1.00350 1.22201 1.00000 0.94217 0.90998
1.21529 1.02074 0.92960 0.98409 1.21544 1.00992 0.93019 0.99213
1.22132 0.81384 0.94612 0.98066 0.91664 1.22757 1.00671 0.89357
0.97721 1.62368 1.06417 1.07033 1.50767 1.22151 0.98646 0.94229
0.90596 1.19703 0.96143 0.91767 0.97505 1.21053 1.19920 0.96514
1.18516 0.91072 1.25010 0.96455 0.96908 0.95054 1.69914 1.42204
1.08616 1.33398 0.86742 0.82786 0.78978 0.80534 1.20173 1.21412
1.19113 1.22853 0.88909 1.01891 0.97854 1.22678 0.98719 0.81690
0.98084 1.87912 1.21610 1.26475 1.94401 0.95726 0.91622 0.90721
0.91368 0.91464 0.95798 0.90855 0.94876 0.91061 0.91202 0.90442
0.91343 0.90073 0.94430 0.91144 0.95444 0.96408 0.96122 0.92684
0.88678 0.94305 0.92561 0.88892
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.17 9.32 60.07 0.56 0.73 16
2 N -0.55 -4.88 5.02 -251.26 -1.26 -6.14 16
3 C 0.02 0.17 9.57 60.06 0.57 0.74 16
4 C 0.05 0.47 4.96 -3.82 -0.02 0.45 16
5 C -0.11 -1.07 5.04 -26.73 -0.13 -1.21 16
6 C -0.11 -1.10 4.93 -26.73 -0.13 -1.24 16
7 C 0.10 1.23 2.80 -26.67 -0.07 1.15 16
8 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
9 C 0.02 0.35 4.91 -3.71 -0.02 0.33 16
10 N -0.54 -9.53 4.88 -234.31 -1.14 -10.68 16
11 C 0.07 1.44 5.22 -3.82 -0.02 1.42 16
12 C -0.01 -0.33 3.31 -27.88 -0.09 -0.42 16
13 C -0.52 -14.92 9.66 -34.44 -0.33 -15.26 16
14 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16
15 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16
16 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16
17 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16
18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
20 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16
21 C 0.01 0.22 4.94 -3.71 -0.02 0.20 16
22 C 0.07 0.90 7.01 37.21 0.26 1.16 16
23 O -0.38 -5.44 10.01 -35.23 -0.35 -5.80 16
24 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16
25 H 0.06 0.46 8.12 -51.92 -0.42 0.03 16
26 H 0.07 0.63 6.47 -51.93 -0.34 0.29 16
27 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16
28 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16
29 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16
30 H 0.07 0.59 8.06 -51.93 -0.42 0.17 16
31 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16
32 H 0.07 0.76 6.24 -51.93 -0.32 0.44 16
33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16
35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16
36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16
37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
38 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16
39 H 0.03 0.57 8.08 -51.93 -0.42 0.15 16
40 H 0.02 0.43 5.33 -51.93 -0.28 0.15 16
41 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16
42 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16
43 H 0.10 1.69 6.05 -51.93 -0.31 1.37 16
44 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16
45 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
46 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16
LS Contribution 353.50 15.07 5.33 5.33
Total: -1.00 -31.02 353.50 -9.70 -40.71
By element:
Atomic # 1 Polarization: 5.50 SS G_CDS: -8.83 Total: -3.33 kcal
Atomic # 6 Polarization: -10.53 SS G_CDS: 0.46 Total: -10.07 kcal
Atomic # 7 Polarization: -42.30 SS G_CDS: -1.63 Total: -43.93 kcal
Atomic # 8 Polarization: -5.44 SS G_CDS: -0.35 Total: -5.80 kcal
Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal
Total LS contribution 5.33 Total: 5.33 kcal
Total: -31.02 -9.70 -40.71 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000595907007.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.202 kcal
(2) G-P(sol) polarization free energy of solvation -31.016 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.218 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.914 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds