Wall clock time and date at job start Mon Mar 30 2020 05:01:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46901 * 1
3 3 C 1.46893 * 111.00360 * 2 1
4 4 C 1.46906 * 110.99755 * 123.95384 * 2 1 3
5 5 C 1.53002 * 109.47053 * 66.04236 * 4 2 1
6 6 C 1.52996 * 109.46891 * 179.97438 * 5 4 2
7 7 C 1.53002 * 109.46891 * 179.97438 * 6 5 4
8 8 H 1.08997 * 109.50573 * 55.00608 * 7 6 5
9 9 C 1.53107 * 109.50722 * 175.08665 * 7 6 5
10 10 N 1.47005 * 109.26007 * 176.78653 * 9 7 6
11 11 C 1.46897 * 111.00022 * 177.61031 * 10 9 7
12 12 C 1.53004 * 109.47206 * 169.99968 * 11 10 9
13 13 C 1.50694 * 109.47256 * 179.97438 * 12 11 10
14 14 H 1.07999 * 119.99936 * 0.02562 * 13 12 11
15 15 C 1.37876 * 120.00038 * 179.97438 * 13 12 11
16 16 N 1.31521 * 120.00202 * 180.02562 * 15 13 12
17 17 Si 1.86796 * 120.00092 * 0.02562 * 15 13 12
18 18 H 1.48503 * 109.47413 * 89.99919 * 17 15 13
19 19 H 1.48501 * 109.47384 * 210.00056 * 17 15 13
20 20 H 1.48496 * 109.47290 * 329.99939 * 17 15 13
21 21 C 1.47016 * 110.75049 * 301.38421 * 10 9 7
22 22 C 1.53096 * 109.25712 * 58.61876 * 21 10 9
23 23 O 1.43010 * 109.50796 * 294.91432 * 7 6 5
24 24 H 1.08995 * 109.47046 * 296.04847 * 1 2 3
25 25 H 1.09008 * 109.46903 * 56.04730 * 1 2 3
26 26 H 1.08999 * 109.47457 * 176.04446 * 1 2 3
27 27 H 1.08998 * 109.47331 * 183.95016 * 3 2 1
28 28 H 1.09003 * 109.47294 * 303.95365 * 3 2 1
29 29 H 1.09006 * 109.47438 * 63.95296 * 3 2 1
30 30 H 1.08992 * 109.47459 * 186.04319 * 4 2 1
31 31 H 1.09004 * 109.47040 * 306.04470 * 4 2 1
32 32 H 1.09001 * 109.47142 * 300.00160 * 5 4 2
33 33 H 1.09004 * 109.47006 * 60.00213 * 5 4 2
34 34 H 1.09001 * 109.47372 * 300.00036 * 6 5 4
35 35 H 1.08996 * 109.47261 * 60.00575 * 6 5 4
36 36 H 1.08996 * 109.50293 * 296.72184 * 9 7 6
37 37 H 1.09002 * 109.50343 * 56.85014 * 9 7 6
38 38 H 1.08995 * 109.47254 * 289.99423 * 11 10 9
39 39 H 1.08999 * 109.47338 * 49.99931 * 11 10 9
40 40 H 1.09002 * 109.47195 * 300.00093 * 12 11 10
41 41 H 1.08999 * 109.47002 * 59.99757 * 12 11 10
42 42 H 0.96999 * 120.00057 * 180.02562 * 16 15 13
43 43 H 1.09002 * 109.50721 * 178.54746 * 21 10 9
44 44 H 1.08995 * 109.51244 * 298.67942 * 21 10 9
45 45 H 1.09000 * 109.50978 * 63.08389 * 22 21 10
46 46 H 1.09004 * 109.50516 * 183.17231 * 22 21 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3713 0.0000
4 6 1.9954 -0.7660 1.1376
5 6 1.6313 -2.2426 0.9704
6 6 2.1801 -3.0405 2.1549
7 6 1.8154 -4.5170 1.9880
8 1 2.1726 -4.8731 1.0218
9 6 2.4672 -5.3342 3.1067
10 7 2.0513 -6.7391 2.9864
11 6 2.7006 -7.5698 4.0093
12 6 2.0636 -8.9609 4.0165
13 6 2.7301 -9.8132 5.0653
14 1 3.5279 -9.4036 5.6670
15 6 2.3206 -11.1156 5.2576
16 7 2.9019 -11.8594 6.1734
17 14 0.9401 -11.8239 4.2175
18 1 1.5100 -12.4456 2.9952
19 1 0.2078 -12.8517 5.0001
20 1 0.0048 -10.7375 3.8301
21 6 0.5879 -6.8574 3.0627
22 6 -0.0449 -6.0251 1.9444
23 8 0.3951 -4.6690 2.0577
24 1 -0.3633 0.4513 0.9232
25 1 -0.3633 0.5740 -0.8525
26 1 -0.3634 -1.0252 -0.0709
27 1 3.0828 1.3431 -0.0708
28 1 1.5899 1.9163 -0.8524
29 1 1.7045 1.8723 0.9233
30 1 3.0796 -0.6612 1.1757
31 1 1.5610 -0.3872 2.0629
32 1 0.5470 -2.3474 0.9324
33 1 2.0657 -2.6214 0.0452
34 1 3.2644 -2.9356 2.1925
35 1 1.7461 -2.6619 3.0803
36 1 3.5518 -5.2672 3.0219
37 1 2.1522 -4.9429 4.0741
38 1 3.7635 -7.6582 3.7846
39 1 2.5734 -7.1069 4.9879
40 1 1.0006 -8.8726 4.2411
41 1 2.1908 -9.4238 3.0379
42 1 2.6141 -12.7758 6.3083
43 1 0.3006 -7.9024 2.9456
44 1 0.2428 -6.4906 4.0293
45 1 0.2575 -6.4255 0.9768
46 1 -1.1308 -6.0645 2.0313
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000595907007.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:01:12
Heat of formation + Delta-G solvation = -70.001200 kcal
Electronic energy + Delta-G solvation = -21118.621059 eV
Core-core repulsion = 18041.977605 eV
Total energy + Delta-G solvation = -3076.643454 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-40.76453 -38.66550 -37.39234 -35.02800 -34.99169 -32.34935 -31.58322 -29.03928
-28.46103 -27.26850 -25.22722 -24.77271 -23.08798 -21.72757 -21.67379 -21.05476
-19.10816 -17.52996 -17.16982 -16.62880 -16.46328 -16.30533 -16.17779 -15.80728
-15.52951 -15.45870 -14.96298 -14.85845 -14.58525 -14.48746 -13.55184 -13.41539
-13.25539 -13.06941 -12.93838 -12.77772 -12.64822 -12.55007 -12.42611 -12.14209
-12.03522 -11.96186 -11.83064 -11.71191 -11.39884 -11.34062 -11.20925 -10.78831
-10.51693 -9.35264 -9.30153 -8.32312 -6.37349 1.35377 1.36616 1.48361
2.34155 2.76142 2.86962 3.02807 3.07368 3.76087 3.94834 4.06004
4.08816 4.12389 4.22356 4.26402 4.30406 4.38644 4.46641 4.50864
4.54934 4.57814 4.63484 4.69696 4.71833 4.77212 4.81909 4.83264
4.87029 4.89943 5.00734 5.01979 5.04973 5.09327 5.22865 5.33542
5.41157 5.44791 5.57610 5.98017 6.06750 6.09319 6.12944 6.23616
6.26848 6.69941 7.27277 8.84294
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.050561 B = 0.002924 C = 0.002801
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 553.657554 B = 9574.506056 C = 9994.464751
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 N -0.564 5.564
3 C 0.023 3.977
4 C 0.057 3.943
5 C -0.103 4.103
6 C -0.102 4.102
7 C 0.099 3.901
8 H 0.067 0.933
9 C 0.022 3.978
10 N -0.544 5.544
11 C 0.081 3.919
12 C -0.005 4.005
13 C -0.535 4.535
14 H 0.031 0.969
15 C 0.005 3.995
16 N -0.949 5.949
17 Si 0.953 3.047
18 H -0.266 1.266
19 H -0.283 1.283
20 H -0.245 1.245
21 C 0.010 3.990
22 C 0.071 3.929
23 O -0.391 6.391
24 H 0.024 0.976
25 H 0.075 0.925
26 H 0.068 0.932
27 H 0.073 0.927
28 H 0.075 0.925
29 H 0.025 0.975
30 H 0.081 0.919
31 H 0.031 0.969
32 H 0.059 0.941
33 H 0.066 0.934
34 H 0.094 0.906
35 H 0.065 0.935
36 H 0.092 0.908
37 H 0.031 0.969
38 H 0.066 0.934
39 H 0.016 0.984
40 H 0.024 0.976
41 H 0.023 0.977
42 H 0.267 0.733
43 H 0.084 0.916
44 H 0.029 0.971
45 H 0.062 0.938
46 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.764 24.264 -13.684 28.446
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 N -0.288 5.288
3 C -0.125 4.125
4 C -0.071 4.071
5 C -0.141 4.141
6 C -0.140 4.140
7 C 0.041 3.959
8 H 0.085 0.915
9 C -0.106 4.106
10 N -0.269 5.269
11 C -0.046 4.046
12 C -0.042 4.042
13 C -0.573 4.573
14 H 0.050 0.950
15 C -0.192 4.192
16 N -0.590 5.590
17 Si 0.776 3.224
18 H -0.191 1.191
19 H -0.209 1.209
20 H -0.169 1.169
21 C -0.118 4.118
22 C -0.006 4.006
23 O -0.311 6.311
24 H 0.042 0.958
25 H 0.093 0.907
26 H 0.086 0.914
27 H 0.092 0.908
28 H 0.093 0.907
29 H 0.044 0.956
30 H 0.099 0.901
31 H 0.049 0.951
32 H 0.078 0.922
33 H 0.084 0.916
34 H 0.113 0.887
35 H 0.084 0.916
36 H 0.110 0.890
37 H 0.050 0.950
38 H 0.084 0.916
39 H 0.035 0.965
40 H 0.042 0.958
41 H 0.041 0.959
42 H 0.076 0.924
43 H 0.102 0.898
44 H 0.047 0.953
45 H 0.081 0.919
46 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges -5.576 23.879 -14.474 28.474
hybrid contribution -0.527 -0.474 1.841 1.973
sum -6.103 23.405 -12.633 27.288
Atomic orbital electron populations
1.22448 0.87085 1.02528 1.00638 1.62003 1.08590 1.14643 1.43550
1.22423 1.01125 0.88126 1.00807 1.22152 1.00467 0.93534 0.90966
1.21411 1.01210 0.93552 0.97882 1.21518 1.02080 0.91150 0.99299
1.22213 0.80645 0.95866 0.97133 0.91507 1.22884 1.01644 0.87716
0.98346 1.62345 1.07057 1.08443 1.49069 1.21863 0.98434 0.93163
0.91136 1.19567 0.96100 0.92831 0.95752 1.21381 1.19278 0.97483
1.19206 0.95047 1.26015 0.99438 0.97315 0.96423 1.70066 1.44255
1.09235 1.35430 0.85615 0.79436 0.78637 0.78702 1.19092 1.20905
1.16858 1.22915 0.88298 1.01887 0.98709 1.22713 0.99836 0.81062
0.97001 1.87924 1.22316 1.26534 1.94297 0.95758 0.90669 0.91360
0.90831 0.90671 0.95619 0.90057 0.95082 0.92187 0.91552 0.88720
0.91589 0.88957 0.95024 0.91593 0.96533 0.95796 0.95876 0.92387
0.89760 0.95259 0.91923 0.86589
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.31 9.32 127.69 1.19 1.50 16
2 N -0.56 -9.04 5.02 -948.84 -4.76 -13.80 16
3 C 0.02 0.28 9.57 127.69 1.22 1.51 16
4 C 0.06 0.88 4.96 86.30 0.43 1.31 16
5 C -0.10 -1.78 5.04 30.59 0.15 -1.62 16
6 C -0.10 -1.85 4.93 30.59 0.15 -1.70 16
7 C 0.10 2.34 2.80 30.63 0.09 2.42 16
8 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16
9 C 0.02 0.62 4.91 86.32 0.42 1.04 16
10 N -0.54 -18.54 4.88 -895.23 -4.37 -22.91 16
11 C 0.08 3.34 5.22 86.30 0.45 3.79 16
12 C 0.00 -0.23 3.31 29.85 0.10 -0.14 16
13 C -0.54 -31.29 9.66 25.60 0.25 -31.04 16
14 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16
15 C 0.01 0.30 5.47 84.65 0.46 0.77 16
16 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16
17 Si 0.95 44.39 27.47 68.60 1.88 46.27 16
18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16
19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16
20 H -0.25 -10.49 6.54 99.48 0.65 -9.84 16
21 C 0.01 0.32 4.94 86.31 0.43 0.75 16
22 C 0.07 1.78 7.01 72.01 0.50 2.28 16
23 O -0.39 -10.22 10.01 -148.98 -1.49 -11.72 16
24 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16
25 H 0.07 0.92 8.12 -2.38 -0.02 0.90 16
26 H 0.07 1.07 6.47 -2.39 -0.02 1.05 16
27 H 0.07 0.81 8.12 -2.39 -0.02 0.79 16
28 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16
29 H 0.03 0.30 8.14 -2.38 -0.02 0.28 16
30 H 0.08 1.13 8.06 -2.39 -0.02 1.11 16
31 H 0.03 0.50 8.12 -2.38 -0.02 0.48 16
32 H 0.06 1.19 6.24 -2.39 -0.01 1.17 16
33 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16
34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16
35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16
36 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16
37 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16
38 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16
39 H 0.02 0.70 8.08 -2.39 -0.02 0.68 16
40 H 0.02 1.11 5.33 -2.39 -0.01 1.10 16
41 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16
42 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16
43 H 0.08 2.84 6.05 -2.39 -0.01 2.82 16
44 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16
45 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16
46 H 0.12 2.38 8.14 -2.38 -0.02 2.36 16
Total: -1.00 -66.85 353.50 -1.74 -68.59
By element:
Atomic # 1 Polarization: 11.50 SS G_CDS: 0.85 Total: 12.34 kcal
Atomic # 6 Polarization: -24.97 SS G_CDS: 5.85 Total: -19.13 kcal
Atomic # 7 Polarization: -87.53 SS G_CDS: -8.83 Total: -96.36 kcal
Atomic # 8 Polarization: -10.22 SS G_CDS: -1.49 Total: -11.72 kcal
Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.27 kcal
Total: -66.85 -1.74 -68.59 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000595907007.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.411 kcal
(2) G-P(sol) polarization free energy of solvation -66.847 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.257 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.744 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.590 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.001 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds