Wall clock time and date at job start Mon Mar 30 2020 05:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46893 * 111.00360 * 2 1 4 4 C 1.46906 * 110.99755 * 123.95384 * 2 1 3 5 5 C 1.53002 * 109.47053 * 66.04236 * 4 2 1 6 6 C 1.52996 * 109.46891 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46891 * 179.97438 * 6 5 4 8 8 H 1.08997 * 109.50573 * 55.00608 * 7 6 5 9 9 C 1.53107 * 109.50722 * 175.08665 * 7 6 5 10 10 N 1.47005 * 109.26007 * 176.78653 * 9 7 6 11 11 C 1.46897 * 111.00022 * 177.61031 * 10 9 7 12 12 C 1.53004 * 109.47206 * 169.99968 * 11 10 9 13 13 C 1.50694 * 109.47256 * 179.97438 * 12 11 10 14 14 H 1.07999 * 119.99936 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00038 * 179.97438 * 13 12 11 16 16 N 1.31521 * 120.00202 * 180.02562 * 15 13 12 17 17 Si 1.86796 * 120.00092 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47413 * 89.99919 * 17 15 13 19 19 H 1.48501 * 109.47384 * 210.00056 * 17 15 13 20 20 H 1.48496 * 109.47290 * 329.99939 * 17 15 13 21 21 C 1.47016 * 110.75049 * 301.38421 * 10 9 7 22 22 C 1.53096 * 109.25712 * 58.61876 * 21 10 9 23 23 O 1.43010 * 109.50796 * 294.91432 * 7 6 5 24 24 H 1.08995 * 109.47046 * 296.04847 * 1 2 3 25 25 H 1.09008 * 109.46903 * 56.04730 * 1 2 3 26 26 H 1.08999 * 109.47457 * 176.04446 * 1 2 3 27 27 H 1.08998 * 109.47331 * 183.95016 * 3 2 1 28 28 H 1.09003 * 109.47294 * 303.95365 * 3 2 1 29 29 H 1.09006 * 109.47438 * 63.95296 * 3 2 1 30 30 H 1.08992 * 109.47459 * 186.04319 * 4 2 1 31 31 H 1.09004 * 109.47040 * 306.04470 * 4 2 1 32 32 H 1.09001 * 109.47142 * 300.00160 * 5 4 2 33 33 H 1.09004 * 109.47006 * 60.00213 * 5 4 2 34 34 H 1.09001 * 109.47372 * 300.00036 * 6 5 4 35 35 H 1.08996 * 109.47261 * 60.00575 * 6 5 4 36 36 H 1.08996 * 109.50293 * 296.72184 * 9 7 6 37 37 H 1.09002 * 109.50343 * 56.85014 * 9 7 6 38 38 H 1.08995 * 109.47254 * 289.99423 * 11 10 9 39 39 H 1.08999 * 109.47338 * 49.99931 * 11 10 9 40 40 H 1.09002 * 109.47195 * 300.00093 * 12 11 10 41 41 H 1.08999 * 109.47002 * 59.99757 * 12 11 10 42 42 H 0.96999 * 120.00057 * 180.02562 * 16 15 13 43 43 H 1.09002 * 109.50721 * 178.54746 * 21 10 9 44 44 H 1.08995 * 109.51244 * 298.67942 * 21 10 9 45 45 H 1.09000 * 109.50978 * 63.08389 * 22 21 10 46 46 H 1.09004 * 109.50516 * 183.17231 * 22 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6313 -2.2426 0.9704 6 6 2.1801 -3.0405 2.1549 7 6 1.8154 -4.5170 1.9880 8 1 2.1726 -4.8731 1.0218 9 6 2.4672 -5.3342 3.1067 10 7 2.0513 -6.7391 2.9864 11 6 2.7006 -7.5698 4.0093 12 6 2.0636 -8.9609 4.0165 13 6 2.7301 -9.8132 5.0653 14 1 3.5279 -9.4036 5.6670 15 6 2.3206 -11.1156 5.2576 16 7 2.9019 -11.8594 6.1734 17 14 0.9401 -11.8239 4.2175 18 1 1.5100 -12.4456 2.9952 19 1 0.2078 -12.8517 5.0001 20 1 0.0048 -10.7375 3.8301 21 6 0.5879 -6.8574 3.0627 22 6 -0.0449 -6.0251 1.9444 23 8 0.3951 -4.6690 2.0577 24 1 -0.3633 0.4513 0.9232 25 1 -0.3633 0.5740 -0.8525 26 1 -0.3634 -1.0252 -0.0709 27 1 3.0828 1.3431 -0.0708 28 1 1.5899 1.9163 -0.8524 29 1 1.7045 1.8723 0.9233 30 1 3.0796 -0.6612 1.1757 31 1 1.5610 -0.3872 2.0629 32 1 0.5470 -2.3474 0.9324 33 1 2.0657 -2.6214 0.0452 34 1 3.2644 -2.9356 2.1925 35 1 1.7461 -2.6619 3.0803 36 1 3.5518 -5.2672 3.0219 37 1 2.1522 -4.9429 4.0741 38 1 3.7635 -7.6582 3.7846 39 1 2.5734 -7.1069 4.9879 40 1 1.0006 -8.8726 4.2411 41 1 2.1908 -9.4238 3.0379 42 1 2.6141 -12.7758 6.3083 43 1 0.3006 -7.9024 2.9456 44 1 0.2428 -6.4906 4.0293 45 1 0.2575 -6.4255 0.9768 46 1 -1.1308 -6.0645 2.0313 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595907007.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:12 Heat of formation + Delta-G solvation = -70.001200 kcal Electronic energy + Delta-G solvation = -21118.621059 eV Core-core repulsion = 18041.977605 eV Total energy + Delta-G solvation = -3076.643454 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.76453 -38.66550 -37.39234 -35.02800 -34.99169 -32.34935 -31.58322 -29.03928 -28.46103 -27.26850 -25.22722 -24.77271 -23.08798 -21.72757 -21.67379 -21.05476 -19.10816 -17.52996 -17.16982 -16.62880 -16.46328 -16.30533 -16.17779 -15.80728 -15.52951 -15.45870 -14.96298 -14.85845 -14.58525 -14.48746 -13.55184 -13.41539 -13.25539 -13.06941 -12.93838 -12.77772 -12.64822 -12.55007 -12.42611 -12.14209 -12.03522 -11.96186 -11.83064 -11.71191 -11.39884 -11.34062 -11.20925 -10.78831 -10.51693 -9.35264 -9.30153 -8.32312 -6.37349 1.35377 1.36616 1.48361 2.34155 2.76142 2.86962 3.02807 3.07368 3.76087 3.94834 4.06004 4.08816 4.12389 4.22356 4.26402 4.30406 4.38644 4.46641 4.50864 4.54934 4.57814 4.63484 4.69696 4.71833 4.77212 4.81909 4.83264 4.87029 4.89943 5.00734 5.01979 5.04973 5.09327 5.22865 5.33542 5.41157 5.44791 5.57610 5.98017 6.06750 6.09319 6.12944 6.23616 6.26848 6.69941 7.27277 8.84294 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.050561 B = 0.002924 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.657554 B = 9574.506056 C = 9994.464751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.564 5.564 3 C 0.023 3.977 4 C 0.057 3.943 5 C -0.103 4.103 6 C -0.102 4.102 7 C 0.099 3.901 8 H 0.067 0.933 9 C 0.022 3.978 10 N -0.544 5.544 11 C 0.081 3.919 12 C -0.005 4.005 13 C -0.535 4.535 14 H 0.031 0.969 15 C 0.005 3.995 16 N -0.949 5.949 17 Si 0.953 3.047 18 H -0.266 1.266 19 H -0.283 1.283 20 H -0.245 1.245 21 C 0.010 3.990 22 C 0.071 3.929 23 O -0.391 6.391 24 H 0.024 0.976 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.025 0.975 30 H 0.081 0.919 31 H 0.031 0.969 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.031 0.969 38 H 0.066 0.934 39 H 0.016 0.984 40 H 0.024 0.976 41 H 0.023 0.977 42 H 0.267 0.733 43 H 0.084 0.916 44 H 0.029 0.971 45 H 0.062 0.938 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.764 24.264 -13.684 28.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.288 5.288 3 C -0.125 4.125 4 C -0.071 4.071 5 C -0.141 4.141 6 C -0.140 4.140 7 C 0.041 3.959 8 H 0.085 0.915 9 C -0.106 4.106 10 N -0.269 5.269 11 C -0.046 4.046 12 C -0.042 4.042 13 C -0.573 4.573 14 H 0.050 0.950 15 C -0.192 4.192 16 N -0.590 5.590 17 Si 0.776 3.224 18 H -0.191 1.191 19 H -0.209 1.209 20 H -0.169 1.169 21 C -0.118 4.118 22 C -0.006 4.006 23 O -0.311 6.311 24 H 0.042 0.958 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.044 0.956 30 H 0.099 0.901 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.035 0.965 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.076 0.924 43 H 0.102 0.898 44 H 0.047 0.953 45 H 0.081 0.919 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.576 23.879 -14.474 28.474 hybrid contribution -0.527 -0.474 1.841 1.973 sum -6.103 23.405 -12.633 27.288 Atomic orbital electron populations 1.22448 0.87085 1.02528 1.00638 1.62003 1.08590 1.14643 1.43550 1.22423 1.01125 0.88126 1.00807 1.22152 1.00467 0.93534 0.90966 1.21411 1.01210 0.93552 0.97882 1.21518 1.02080 0.91150 0.99299 1.22213 0.80645 0.95866 0.97133 0.91507 1.22884 1.01644 0.87716 0.98346 1.62345 1.07057 1.08443 1.49069 1.21863 0.98434 0.93163 0.91136 1.19567 0.96100 0.92831 0.95752 1.21381 1.19278 0.97483 1.19206 0.95047 1.26015 0.99438 0.97315 0.96423 1.70066 1.44255 1.09235 1.35430 0.85615 0.79436 0.78637 0.78702 1.19092 1.20905 1.16858 1.22915 0.88298 1.01887 0.98709 1.22713 0.99836 0.81062 0.97001 1.87924 1.22316 1.26534 1.94297 0.95758 0.90669 0.91360 0.90831 0.90671 0.95619 0.90057 0.95082 0.92187 0.91552 0.88720 0.91589 0.88957 0.95024 0.91593 0.96533 0.95796 0.95876 0.92387 0.89760 0.95259 0.91923 0.86589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.32 127.69 1.19 1.50 16 2 N -0.56 -9.04 5.02 -948.84 -4.76 -13.80 16 3 C 0.02 0.28 9.57 127.69 1.22 1.51 16 4 C 0.06 0.88 4.96 86.30 0.43 1.31 16 5 C -0.10 -1.78 5.04 30.59 0.15 -1.62 16 6 C -0.10 -1.85 4.93 30.59 0.15 -1.70 16 7 C 0.10 2.34 2.80 30.63 0.09 2.42 16 8 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 9 C 0.02 0.62 4.91 86.32 0.42 1.04 16 10 N -0.54 -18.54 4.88 -895.23 -4.37 -22.91 16 11 C 0.08 3.34 5.22 86.30 0.45 3.79 16 12 C 0.00 -0.23 3.31 29.85 0.10 -0.14 16 13 C -0.54 -31.29 9.66 25.60 0.25 -31.04 16 14 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16 15 C 0.01 0.30 5.47 84.65 0.46 0.77 16 16 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 17 Si 0.95 44.39 27.47 68.60 1.88 46.27 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.25 -10.49 6.54 99.48 0.65 -9.84 16 21 C 0.01 0.32 4.94 86.31 0.43 0.75 16 22 C 0.07 1.78 7.01 72.01 0.50 2.28 16 23 O -0.39 -10.22 10.01 -148.98 -1.49 -11.72 16 24 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 25 H 0.07 0.92 8.12 -2.38 -0.02 0.90 16 26 H 0.07 1.07 6.47 -2.39 -0.02 1.05 16 27 H 0.07 0.81 8.12 -2.39 -0.02 0.79 16 28 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 29 H 0.03 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.08 1.13 8.06 -2.39 -0.02 1.11 16 31 H 0.03 0.50 8.12 -2.38 -0.02 0.48 16 32 H 0.06 1.19 6.24 -2.39 -0.01 1.17 16 33 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.02 0.70 8.08 -2.39 -0.02 0.68 16 40 H 0.02 1.11 5.33 -2.39 -0.01 1.10 16 41 H 0.02 1.09 7.57 -2.39 -0.02 1.07 16 42 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 43 H 0.08 2.84 6.05 -2.39 -0.01 2.82 16 44 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.12 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -66.85 353.50 -1.74 -68.59 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.85 Total: 12.34 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 5.85 Total: -19.13 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -8.83 Total: -96.36 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: -1.49 Total: -11.72 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.27 kcal Total: -66.85 -1.74 -68.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595907007.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.411 kcal (2) G-P(sol) polarization free energy of solvation -66.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds