Wall clock time and date at job start Mon Mar 30 2020 05:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47997 * 111.00033 * 2 1 4 4 C 1.50442 * 112.82333 * 191.34681 * 3 2 1 5 5 C 1.54305 * 108.49509 * 93.73721 * 4 3 2 6 6 C 1.45881 * 112.19276 * 281.45419 * 5 4 3 7 7 C 1.54319 * 112.18105 * 61.11408 * 6 5 4 8 8 H 1.08993 * 109.62822 * 41.38337 * 7 6 5 9 9 C 1.52999 * 109.62856 * 161.78006 * 7 6 5 10 10 N 1.46906 * 109.46897 * 184.60654 * 9 7 6 11 11 C 1.46898 * 110.99888 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46764 * 179.97438 * 11 10 9 13 13 O 1.42897 * 109.47046 * 65.00004 * 12 11 10 14 14 C 1.42901 * 113.99910 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47277 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99977 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00140 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00016 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99895 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47210 * 60.00065 * 19 17 15 21 21 H 1.48503 * 109.47253 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47350 * 300.00013 * 19 17 15 23 23 C 1.47752 * 110.83560 * 231.31262 * 2 1 3 24 24 H 1.08998 * 109.46927 * 63.94981 * 1 2 3 25 25 H 1.09000 * 109.46747 * 183.95157 * 1 2 3 26 26 H 1.08992 * 109.46962 * 303.95068 * 1 2 3 27 27 H 1.09007 * 108.80964 * 70.48929 * 3 2 1 28 28 H 1.08998 * 108.81368 * 312.21324 * 3 2 1 29 29 H 1.09004 * 109.63400 * 334.03614 * 4 3 2 30 30 H 1.09003 * 109.63395 * 213.44327 * 4 3 2 31 31 H 1.08999 * 108.93802 * 160.75335 * 5 4 3 32 32 H 1.09001 * 108.86350 * 42.10211 * 5 4 3 33 33 H 1.08999 * 108.93949 * 300.42081 * 6 5 4 34 34 H 1.08997 * 108.87119 * 181.76215 * 6 5 4 35 35 H 1.09000 * 109.47486 * 64.60678 * 9 7 6 36 36 H 1.09001 * 109.47362 * 304.59955 * 9 7 6 37 37 H 1.00902 * 110.99923 * 303.95801 * 10 9 7 38 38 H 1.08995 * 109.47296 * 299.99911 * 11 10 9 39 39 H 1.08997 * 109.47334 * 60.00212 * 11 10 9 40 40 H 1.08997 * 109.46702 * 184.99892 * 12 11 10 41 41 H 1.09002 * 109.47126 * 304.99895 * 12 11 10 42 42 H 1.09001 * 109.47039 * 299.99914 * 14 13 12 43 43 H 1.09003 * 109.47349 * 59.99836 * 14 13 12 44 44 H 0.96998 * 120.00342 * 179.97438 * 18 17 15 45 45 H 1.08999 * 108.87468 * 324.06270 * 23 2 1 46 46 H 1.08993 * 108.60132 * 205.87409 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9994 1.3817 0.0000 4 6 3.4778 1.4392 -0.2728 5 6 3.6882 1.6560 -1.7860 6 6 3.5145 0.4245 -2.5485 7 6 2.0920 -0.1556 -2.4020 8 1 1.3614 0.6523 -2.4402 9 6 1.8220 -1.1470 -3.5357 10 7 0.4313 -1.6136 -3.4573 11 6 0.1351 -2.5689 -4.5332 12 6 -1.3188 -3.0317 -4.4183 13 8 -2.1910 -1.9230 -4.6463 14 6 -3.5798 -2.2491 -4.5619 15 6 -4.4026 -1.0129 -4.8184 16 1 -3.9138 -0.0721 -5.0247 17 6 -5.7793 -1.0828 -4.7896 18 7 -6.3744 -2.2281 -4.5379 19 14 -6.7991 0.4498 -5.1068 20 1 -6.4948 0.9751 -6.4620 21 1 -8.2423 0.1109 -5.0193 22 1 -6.4710 1.4819 -4.0907 23 6 1.9946 -0.8632 -1.0779 24 1 -0.3633 0.4513 -0.9233 25 1 -0.3633 -1.0252 0.0708 26 1 -0.3633 0.5739 0.8524 27 1 1.8036 1.8333 0.9726 28 1 1.4782 1.9583 -0.7642 29 1 3.9431 0.5015 0.0310 30 1 3.9204 2.2673 0.2809 31 1 4.6963 2.0357 -1.9521 32 1 2.9694 2.3953 -2.1394 33 1 4.2355 -0.3137 -2.1973 34 1 3.7053 0.6319 -3.6014 35 1 2.4966 -1.9981 -3.4425 36 1 1.9869 -0.6560 -4.4948 37 1 0.2350 -2.0150 -2.5526 38 1 0.2882 -2.0873 -5.4990 39 1 0.7979 -3.4299 -4.4474 40 1 -1.5134 -3.8057 -5.1606 41 1 -1.4945 -3.4330 -3.4202 42 1 -3.8210 -3.0067 -5.3075 43 1 -3.8028 -2.6344 -3.5670 44 1 -7.3429 -2.2773 -4.5173 45 1 1.3395 -1.7273 -1.1886 46 1 2.9869 -1.2115 -0.7917 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700809712.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:30 Heat of formation + Delta-G solvation = -54.128572 kcal Electronic energy + Delta-G solvation = -21515.744794 eV Core-core repulsion = 18439.789628 eV Total energy + Delta-G solvation = -3075.955166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.80981 -37.13475 -35.65359 -34.59934 -32.86848 -32.26800 -29.12456 -27.90040 -26.78369 -25.69192 -24.43736 -22.43662 -22.25040 -21.53134 -20.58227 -19.45807 -16.57467 -16.26878 -16.15865 -15.67166 -15.42704 -14.91563 -14.73433 -14.44297 -14.17511 -13.86995 -13.67947 -13.20706 -13.16962 -12.89129 -12.65304 -12.31414 -11.97518 -11.82751 -11.70001 -11.40013 -11.30644 -11.21200 -10.86796 -10.81743 -10.79412 -10.77267 -10.63749 -10.44430 -10.26354 -9.93396 -9.06016 -8.76407 -8.20498 -8.17742 -8.09148 -6.06574 -4.07578 3.35187 3.37391 3.41795 3.84236 4.17223 4.38745 4.55709 4.59497 4.73499 4.85370 4.93518 5.02484 5.17498 5.28718 5.29810 5.35490 5.43941 5.49995 5.52046 5.59768 5.62931 5.66926 5.75213 5.76985 5.80795 5.87781 5.93163 6.00455 6.01376 6.07353 6.08020 6.13012 6.15460 6.30511 6.34393 7.02231 7.09736 7.14199 7.21461 7.48065 7.55869 7.84955 8.21491 8.66427 9.06884 9.57114 11.05130 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.003748 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.738540 B = 7468.987275 C = 8120.166419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.552 5.552 3 C 0.060 3.940 4 C -0.121 4.121 5 C -0.121 4.121 6 C -0.111 4.111 7 C -0.115 4.115 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.677 5.677 11 C 0.066 3.934 12 C 0.065 3.935 13 O -0.380 6.380 14 C 0.194 3.806 15 C -0.511 4.511 16 H 0.066 0.934 17 C 0.056 3.944 18 N -0.901 5.901 19 Si 0.907 3.093 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.065 3.935 24 H 0.037 0.963 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.036 0.964 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.024 0.976 36 H 0.071 0.929 37 H 0.336 0.664 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.040 0.960 41 H 0.033 0.967 42 H 0.002 0.998 43 H 0.003 0.997 44 H 0.264 0.736 45 H 0.067 0.933 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.922 3.236 7.364 22.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.276 5.276 3 C -0.067 4.067 4 C -0.158 4.158 5 C -0.158 4.158 6 C -0.149 4.149 7 C -0.135 4.135 8 H 0.101 0.899 9 C -0.061 4.061 10 N -0.309 5.309 11 C -0.063 4.063 12 C -0.013 4.013 13 O -0.300 6.300 14 C 0.120 3.880 15 C -0.549 4.549 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.540 5.540 19 Si 0.734 3.266 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.063 4.063 24 H 0.055 0.945 25 H 0.087 0.913 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.090 0.910 37 H 0.156 0.844 38 H 0.096 0.904 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.020 0.980 43 H 0.021 0.979 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.691 3.683 7.415 22.286 hybrid contribution -0.620 -0.065 -0.566 0.842 sum 20.071 3.618 6.849 21.514 Atomic orbital electron populations 1.22375 0.86567 1.02467 1.00940 1.61923 1.08020 1.12268 1.45435 1.21786 0.95074 0.88987 1.00877 1.21431 0.96004 1.02491 0.95896 1.20598 1.01700 0.98245 0.95265 1.20547 0.96271 0.97645 1.00403 1.21525 0.97271 0.99230 0.95495 0.89913 1.21932 0.88830 0.96716 0.98669 1.60358 1.21558 1.42652 1.06358 1.21970 0.94965 0.93372 0.96033 1.22229 0.89969 0.90586 0.98528 1.87956 1.18159 1.31771 1.92091 1.20173 0.75847 0.96828 0.95180 1.21027 0.90469 0.95473 1.47980 0.91612 1.24939 0.97549 0.96712 0.95303 1.69952 1.09818 1.24733 1.49508 0.86410 0.78540 0.82611 0.78989 1.20048 1.21197 1.20023 1.21906 1.00563 0.95531 0.88309 0.94462 0.91303 0.91867 0.91370 0.94586 0.90834 0.91322 0.92175 0.92100 0.92193 0.92054 0.95743 0.91027 0.84401 0.90425 0.94939 0.94205 0.94884 0.98038 0.97921 0.92678 0.91488 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.40 60.07 0.56 0.86 16 2 N -0.55 -6.25 4.94 -244.43 -1.21 -7.46 16 3 C 0.06 0.60 4.99 -4.50 -0.02 0.58 16 4 C -0.12 -1.01 5.63 -27.32 -0.15 -1.17 16 5 C -0.12 -1.01 5.30 -29.42 -0.16 -1.16 16 6 C -0.11 -0.99 4.71 -29.41 -0.14 -1.13 16 7 C -0.12 -1.25 2.05 -91.20 -0.19 -1.43 16 8 H 0.08 1.10 6.69 -51.93 -0.35 0.75 16 9 C 0.07 0.81 5.04 -3.82 -0.02 0.79 16 10 N -0.68 -9.99 6.45 -113.78 -0.73 -10.72 16 11 C 0.07 0.99 6.07 -3.82 -0.02 0.97 16 12 C 0.07 1.23 6.22 37.16 0.23 1.46 16 13 O -0.38 -9.45 10.27 -35.23 -0.36 -9.81 16 14 C 0.19 5.46 5.69 36.00 0.20 5.67 16 15 C -0.51 -15.42 9.43 -34.44 -0.32 -15.75 16 16 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 19 Si 0.91 22.24 29.54 -169.99 -5.02 17.22 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.06 0.70 4.62 -4.63 -0.02 0.67 16 24 H 0.04 0.52 7.79 -51.93 -0.40 0.11 16 25 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.40 6.49 -51.93 -0.34 0.06 16 29 H 0.07 0.65 7.09 -51.93 -0.37 0.28 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 33 H 0.06 0.50 7.53 -51.93 -0.39 0.11 16 34 H 0.06 0.54 7.94 -51.93 -0.41 0.13 16 35 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.07 0.87 8.06 -51.93 -0.42 0.46 16 37 H 0.34 4.76 6.77 -39.29 -0.27 4.49 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 43 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.07 0.75 5.48 -51.93 -0.28 0.47 16 46 H 0.07 0.68 6.61 -51.93 -0.34 0.34 16 LS Contribution 351.98 15.07 5.30 5.30 Total: -1.00 -31.57 351.98 -10.00 -41.56 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.57 Total: -1.37 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -0.14 Total: -8.09 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: -1.20 Total: -44.82 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: -0.36 Total: -9.81 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.57 -10.00 -41.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700809712.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.567 kcal (2) G-P(sol) polarization free energy of solvation -31.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds