Wall clock time and date at job start Mon Mar 30 2020 05:00:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46904 * 1
3 3 C 1.47997 * 111.00033 * 2 1
4 4 C 1.50442 * 112.82333 * 191.34681 * 3 2 1
5 5 C 1.54305 * 108.49509 * 93.73721 * 4 3 2
6 6 C 1.45881 * 112.19276 * 281.45419 * 5 4 3
7 7 C 1.54319 * 112.18105 * 61.11408 * 6 5 4
8 8 H 1.08993 * 109.62822 * 41.38337 * 7 6 5
9 9 C 1.52999 * 109.62856 * 161.78006 * 7 6 5
10 10 N 1.46906 * 109.46897 * 184.60654 * 9 7 6
11 11 C 1.46898 * 110.99888 * 179.97438 * 10 9 7
12 12 C 1.53007 * 109.46764 * 179.97438 * 11 10 9
13 13 O 1.42897 * 109.47046 * 65.00004 * 12 11 10
14 14 C 1.42901 * 113.99910 * 179.97438 * 13 12 11
15 15 C 1.50697 * 109.47277 * 180.02562 * 14 13 12
16 16 H 1.08000 * 119.99977 * 359.97438 * 15 14 13
17 17 C 1.37878 * 120.00140 * 179.97438 * 15 14 13
18 18 N 1.31506 * 120.00016 * 0.02562 * 17 15 14
19 19 Si 1.86799 * 119.99895 * 179.97438 * 17 15 14
20 20 H 1.48498 * 109.47210 * 60.00065 * 19 17 15
21 21 H 1.48503 * 109.47253 * 180.02562 * 19 17 15
22 22 H 1.48505 * 109.47350 * 300.00013 * 19 17 15
23 23 C 1.47752 * 110.83560 * 231.31262 * 2 1 3
24 24 H 1.08998 * 109.46927 * 63.94981 * 1 2 3
25 25 H 1.09000 * 109.46747 * 183.95157 * 1 2 3
26 26 H 1.08992 * 109.46962 * 303.95068 * 1 2 3
27 27 H 1.09007 * 108.80964 * 70.48929 * 3 2 1
28 28 H 1.08998 * 108.81368 * 312.21324 * 3 2 1
29 29 H 1.09004 * 109.63400 * 334.03614 * 4 3 2
30 30 H 1.09003 * 109.63395 * 213.44327 * 4 3 2
31 31 H 1.08999 * 108.93802 * 160.75335 * 5 4 3
32 32 H 1.09001 * 108.86350 * 42.10211 * 5 4 3
33 33 H 1.08999 * 108.93949 * 300.42081 * 6 5 4
34 34 H 1.08997 * 108.87119 * 181.76215 * 6 5 4
35 35 H 1.09000 * 109.47486 * 64.60678 * 9 7 6
36 36 H 1.09001 * 109.47362 * 304.59955 * 9 7 6
37 37 H 1.00902 * 110.99923 * 303.95801 * 10 9 7
38 38 H 1.08995 * 109.47296 * 299.99911 * 11 10 9
39 39 H 1.08997 * 109.47334 * 60.00212 * 11 10 9
40 40 H 1.08997 * 109.46702 * 184.99892 * 12 11 10
41 41 H 1.09002 * 109.47126 * 304.99895 * 12 11 10
42 42 H 1.09001 * 109.47039 * 299.99914 * 14 13 12
43 43 H 1.09003 * 109.47349 * 59.99836 * 14 13 12
44 44 H 0.96998 * 120.00342 * 179.97438 * 18 17 15
45 45 H 1.08999 * 108.87468 * 324.06270 * 23 2 1
46 46 H 1.08993 * 108.60132 * 205.87409 * 23 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9994 1.3817 0.0000
4 6 3.4778 1.4392 -0.2728
5 6 3.6882 1.6560 -1.7860
6 6 3.5145 0.4245 -2.5485
7 6 2.0920 -0.1556 -2.4020
8 1 1.3614 0.6523 -2.4402
9 6 1.8220 -1.1470 -3.5357
10 7 0.4313 -1.6136 -3.4573
11 6 0.1351 -2.5689 -4.5332
12 6 -1.3188 -3.0317 -4.4183
13 8 -2.1910 -1.9230 -4.6463
14 6 -3.5798 -2.2491 -4.5619
15 6 -4.4026 -1.0129 -4.8184
16 1 -3.9138 -0.0721 -5.0247
17 6 -5.7793 -1.0828 -4.7896
18 7 -6.3744 -2.2281 -4.5379
19 14 -6.7991 0.4498 -5.1068
20 1 -6.4948 0.9751 -6.4620
21 1 -8.2423 0.1109 -5.0193
22 1 -6.4710 1.4819 -4.0907
23 6 1.9946 -0.8632 -1.0779
24 1 -0.3633 0.4513 -0.9233
25 1 -0.3633 -1.0252 0.0708
26 1 -0.3633 0.5739 0.8524
27 1 1.8036 1.8333 0.9726
28 1 1.4782 1.9583 -0.7642
29 1 3.9431 0.5015 0.0310
30 1 3.9204 2.2673 0.2809
31 1 4.6963 2.0357 -1.9521
32 1 2.9694 2.3953 -2.1394
33 1 4.2355 -0.3137 -2.1973
34 1 3.7053 0.6319 -3.6014
35 1 2.4966 -1.9981 -3.4425
36 1 1.9869 -0.6560 -4.4948
37 1 0.2350 -2.0150 -2.5526
38 1 0.2882 -2.0873 -5.4990
39 1 0.7979 -3.4299 -4.4474
40 1 -1.5134 -3.8057 -5.1606
41 1 -1.4945 -3.4330 -3.4202
42 1 -3.8210 -3.0067 -5.3075
43 1 -3.8028 -2.6344 -3.5670
44 1 -7.3429 -2.2773 -4.5173
45 1 1.3395 -1.7273 -1.1886
46 1 2.9869 -1.2115 -0.7917
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000700809712.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:00:30
Heat of formation + Delta-G solvation = -54.128572 kcal
Electronic energy + Delta-G solvation = -21515.744794 eV
Core-core repulsion = 18439.789628 eV
Total energy + Delta-G solvation = -3075.955166 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-39.80981 -37.13475 -35.65359 -34.59934 -32.86848 -32.26800 -29.12456 -27.90040
-26.78369 -25.69192 -24.43736 -22.43662 -22.25040 -21.53134 -20.58227 -19.45807
-16.57467 -16.26878 -16.15865 -15.67166 -15.42704 -14.91563 -14.73433 -14.44297
-14.17511 -13.86995 -13.67947 -13.20706 -13.16962 -12.89129 -12.65304 -12.31414
-11.97518 -11.82751 -11.70001 -11.40013 -11.30644 -11.21200 -10.86796 -10.81743
-10.79412 -10.77267 -10.63749 -10.44430 -10.26354 -9.93396 -9.06016 -8.76407
-8.20498 -8.17742 -8.09148 -6.06574 -4.07578 3.35187 3.37391 3.41795
3.84236 4.17223 4.38745 4.55709 4.59497 4.73499 4.85370 4.93518
5.02484 5.17498 5.28718 5.29810 5.35490 5.43941 5.49995 5.52046
5.59768 5.62931 5.66926 5.75213 5.76985 5.80795 5.87781 5.93163
6.00455 6.01376 6.07353 6.08020 6.13012 6.15460 6.30511 6.34393
7.02231 7.09736 7.14199 7.21461 7.48065 7.55869 7.84955 8.21491
8.66427 9.06884 9.57114 11.05130
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.019914 B = 0.003748 C = 0.003447
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1405.738540 B = 7468.987275 C = 8120.166419
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 N -0.552 5.552
3 C 0.060 3.940
4 C -0.121 4.121
5 C -0.121 4.121
6 C -0.111 4.111
7 C -0.115 4.115
8 H 0.083 0.917
9 C 0.068 3.932
10 N -0.677 5.677
11 C 0.066 3.934
12 C 0.065 3.935
13 O -0.380 6.380
14 C 0.194 3.806
15 C -0.511 4.511
16 H 0.066 0.934
17 C 0.056 3.944
18 N -0.901 5.901
19 Si 0.907 3.093
20 H -0.275 1.275
21 H -0.286 1.286
22 H -0.275 1.275
23 C 0.065 3.935
24 H 0.037 0.963
25 H 0.068 0.932
26 H 0.063 0.937
27 H 0.068 0.932
28 H 0.036 0.964
29 H 0.073 0.927
30 H 0.068 0.932
31 H 0.060 0.940
32 H 0.060 0.940
33 H 0.059 0.941
34 H 0.061 0.939
35 H 0.024 0.976
36 H 0.071 0.929
37 H 0.336 0.664
38 H 0.077 0.923
39 H 0.033 0.967
40 H 0.040 0.960
41 H 0.033 0.967
42 H 0.002 0.998
43 H 0.003 0.997
44 H 0.264 0.736
45 H 0.067 0.933
46 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.922 3.236 7.364 22.415
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 N -0.276 5.276
3 C -0.067 4.067
4 C -0.158 4.158
5 C -0.158 4.158
6 C -0.149 4.149
7 C -0.135 4.135
8 H 0.101 0.899
9 C -0.061 4.061
10 N -0.309 5.309
11 C -0.063 4.063
12 C -0.013 4.013
13 O -0.300 6.300
14 C 0.120 3.880
15 C -0.549 4.549
16 H 0.084 0.916
17 C -0.145 4.145
18 N -0.540 5.540
19 Si 0.734 3.266
20 H -0.200 1.200
21 H -0.212 1.212
22 H -0.200 1.200
23 C -0.063 4.063
24 H 0.055 0.945
25 H 0.087 0.913
26 H 0.081 0.919
27 H 0.086 0.914
28 H 0.054 0.946
29 H 0.092 0.908
30 H 0.087 0.913
31 H 0.078 0.922
32 H 0.079 0.921
33 H 0.078 0.922
34 H 0.079 0.921
35 H 0.043 0.957
36 H 0.090 0.910
37 H 0.156 0.844
38 H 0.096 0.904
39 H 0.051 0.949
40 H 0.058 0.942
41 H 0.051 0.949
42 H 0.020 0.980
43 H 0.021 0.979
44 H 0.073 0.927
45 H 0.085 0.915
46 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 20.691 3.683 7.415 22.286
hybrid contribution -0.620 -0.065 -0.566 0.842
sum 20.071 3.618 6.849 21.514
Atomic orbital electron populations
1.22375 0.86567 1.02467 1.00940 1.61923 1.08020 1.12268 1.45435
1.21786 0.95074 0.88987 1.00877 1.21431 0.96004 1.02491 0.95896
1.20598 1.01700 0.98245 0.95265 1.20547 0.96271 0.97645 1.00403
1.21525 0.97271 0.99230 0.95495 0.89913 1.21932 0.88830 0.96716
0.98669 1.60358 1.21558 1.42652 1.06358 1.21970 0.94965 0.93372
0.96033 1.22229 0.89969 0.90586 0.98528 1.87956 1.18159 1.31771
1.92091 1.20173 0.75847 0.96828 0.95180 1.21027 0.90469 0.95473
1.47980 0.91612 1.24939 0.97549 0.96712 0.95303 1.69952 1.09818
1.24733 1.49508 0.86410 0.78540 0.82611 0.78989 1.20048 1.21197
1.20023 1.21906 1.00563 0.95531 0.88309 0.94462 0.91303 0.91867
0.91370 0.94586 0.90834 0.91322 0.92175 0.92100 0.92193 0.92054
0.95743 0.91027 0.84401 0.90425 0.94939 0.94205 0.94884 0.98038
0.97921 0.92678 0.91488 0.91409
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.30 9.40 60.07 0.56 0.86 16
2 N -0.55 -6.25 4.94 -244.43 -1.21 -7.46 16
3 C 0.06 0.60 4.99 -4.50 -0.02 0.58 16
4 C -0.12 -1.01 5.63 -27.32 -0.15 -1.17 16
5 C -0.12 -1.01 5.30 -29.42 -0.16 -1.16 16
6 C -0.11 -0.99 4.71 -29.41 -0.14 -1.13 16
7 C -0.12 -1.25 2.05 -91.20 -0.19 -1.43 16
8 H 0.08 1.10 6.69 -51.93 -0.35 0.75 16
9 C 0.07 0.81 5.04 -3.82 -0.02 0.79 16
10 N -0.68 -9.99 6.45 -113.78 -0.73 -10.72 16
11 C 0.07 0.99 6.07 -3.82 -0.02 0.97 16
12 C 0.07 1.23 6.22 37.16 0.23 1.46 16
13 O -0.38 -9.45 10.27 -35.23 -0.36 -9.81 16
14 C 0.19 5.46 5.69 36.00 0.20 5.67 16
15 C -0.51 -15.42 9.43 -34.44 -0.32 -15.75 16
16 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16
17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
18 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16
19 Si 0.91 22.24 29.54 -169.99 -5.02 17.22 16
20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16
23 C 0.06 0.70 4.62 -4.63 -0.02 0.67 16
24 H 0.04 0.52 7.79 -51.93 -0.40 0.11 16
25 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16
26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16
27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
28 H 0.04 0.40 6.49 -51.93 -0.34 0.06 16
29 H 0.07 0.65 7.09 -51.93 -0.37 0.28 16
30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16
32 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16
33 H 0.06 0.50 7.53 -51.93 -0.39 0.11 16
34 H 0.06 0.54 7.94 -51.93 -0.41 0.13 16
35 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16
36 H 0.07 0.87 8.06 -51.93 -0.42 0.46 16
37 H 0.34 4.76 6.77 -39.29 -0.27 4.49 16
38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16
39 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16
40 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16
41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16
42 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16
43 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16
44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16
45 H 0.07 0.75 5.48 -51.93 -0.28 0.47 16
46 H 0.07 0.68 6.61 -51.93 -0.34 0.34 16
LS Contribution 351.98 15.07 5.30 5.30
Total: -1.00 -31.57 351.98 -10.00 -41.56
By element:
Atomic # 1 Polarization: 7.20 SS G_CDS: -8.57 Total: -1.37 kcal
Atomic # 6 Polarization: -7.95 SS G_CDS: -0.14 Total: -8.09 kcal
Atomic # 7 Polarization: -43.61 SS G_CDS: -1.20 Total: -44.82 kcal
Atomic # 8 Polarization: -9.45 SS G_CDS: -0.36 Total: -9.81 kcal
Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal
Total LS contribution 5.30 Total: 5.30 kcal
Total: -31.57 -10.00 -41.56 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000700809712.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.567 kcal
(2) G-P(sol) polarization free energy of solvation -31.565 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.133 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.561 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.129 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds