Wall clock time and date at job start Mon Mar 30 2020 05:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47997 * 111.00033 * 2 1 4 4 C 1.50442 * 112.82333 * 191.34681 * 3 2 1 5 5 C 1.54305 * 108.49509 * 93.73721 * 4 3 2 6 6 C 1.45881 * 112.19276 * 281.45419 * 5 4 3 7 7 C 1.54319 * 112.18105 * 61.11408 * 6 5 4 8 8 H 1.08993 * 109.62822 * 41.38337 * 7 6 5 9 9 C 1.52999 * 109.62856 * 161.78006 * 7 6 5 10 10 N 1.46906 * 109.46897 * 184.60654 * 9 7 6 11 11 C 1.46898 * 110.99888 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.46764 * 179.97438 * 11 10 9 13 13 O 1.42897 * 109.47046 * 65.00004 * 12 11 10 14 14 C 1.42901 * 113.99910 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.47277 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99977 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00140 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00016 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99895 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47210 * 60.00065 * 19 17 15 21 21 H 1.48503 * 109.47253 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47350 * 300.00013 * 19 17 15 23 23 C 1.47752 * 110.83560 * 231.31262 * 2 1 3 24 24 H 1.08998 * 109.46927 * 63.94981 * 1 2 3 25 25 H 1.09000 * 109.46747 * 183.95157 * 1 2 3 26 26 H 1.08992 * 109.46962 * 303.95068 * 1 2 3 27 27 H 1.09007 * 108.80964 * 70.48929 * 3 2 1 28 28 H 1.08998 * 108.81368 * 312.21324 * 3 2 1 29 29 H 1.09004 * 109.63400 * 334.03614 * 4 3 2 30 30 H 1.09003 * 109.63395 * 213.44327 * 4 3 2 31 31 H 1.08999 * 108.93802 * 160.75335 * 5 4 3 32 32 H 1.09001 * 108.86350 * 42.10211 * 5 4 3 33 33 H 1.08999 * 108.93949 * 300.42081 * 6 5 4 34 34 H 1.08997 * 108.87119 * 181.76215 * 6 5 4 35 35 H 1.09000 * 109.47486 * 64.60678 * 9 7 6 36 36 H 1.09001 * 109.47362 * 304.59955 * 9 7 6 37 37 H 1.00902 * 110.99923 * 303.95801 * 10 9 7 38 38 H 1.08995 * 109.47296 * 299.99911 * 11 10 9 39 39 H 1.08997 * 109.47334 * 60.00212 * 11 10 9 40 40 H 1.08997 * 109.46702 * 184.99892 * 12 11 10 41 41 H 1.09002 * 109.47126 * 304.99895 * 12 11 10 42 42 H 1.09001 * 109.47039 * 299.99914 * 14 13 12 43 43 H 1.09003 * 109.47349 * 59.99836 * 14 13 12 44 44 H 0.96998 * 120.00342 * 179.97438 * 18 17 15 45 45 H 1.08999 * 108.87468 * 324.06270 * 23 2 1 46 46 H 1.08993 * 108.60132 * 205.87409 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9994 1.3817 0.0000 4 6 3.4778 1.4392 -0.2728 5 6 3.6882 1.6560 -1.7860 6 6 3.5145 0.4245 -2.5485 7 6 2.0920 -0.1556 -2.4020 8 1 1.3614 0.6523 -2.4402 9 6 1.8220 -1.1470 -3.5357 10 7 0.4313 -1.6136 -3.4573 11 6 0.1351 -2.5689 -4.5332 12 6 -1.3188 -3.0317 -4.4183 13 8 -2.1910 -1.9230 -4.6463 14 6 -3.5798 -2.2491 -4.5619 15 6 -4.4026 -1.0129 -4.8184 16 1 -3.9138 -0.0721 -5.0247 17 6 -5.7793 -1.0828 -4.7896 18 7 -6.3744 -2.2281 -4.5379 19 14 -6.7991 0.4498 -5.1068 20 1 -6.4948 0.9751 -6.4620 21 1 -8.2423 0.1109 -5.0193 22 1 -6.4710 1.4819 -4.0907 23 6 1.9946 -0.8632 -1.0779 24 1 -0.3633 0.4513 -0.9233 25 1 -0.3633 -1.0252 0.0708 26 1 -0.3633 0.5739 0.8524 27 1 1.8036 1.8333 0.9726 28 1 1.4782 1.9583 -0.7642 29 1 3.9431 0.5015 0.0310 30 1 3.9204 2.2673 0.2809 31 1 4.6963 2.0357 -1.9521 32 1 2.9694 2.3953 -2.1394 33 1 4.2355 -0.3137 -2.1973 34 1 3.7053 0.6319 -3.6014 35 1 2.4966 -1.9981 -3.4425 36 1 1.9869 -0.6560 -4.4948 37 1 0.2350 -2.0150 -2.5526 38 1 0.2882 -2.0873 -5.4990 39 1 0.7979 -3.4299 -4.4474 40 1 -1.5134 -3.8057 -5.1606 41 1 -1.4945 -3.4330 -3.4202 42 1 -3.8210 -3.0067 -5.3075 43 1 -3.8028 -2.6344 -3.5670 44 1 -7.3429 -2.2773 -4.5173 45 1 1.3395 -1.7273 -1.1886 46 1 2.9869 -1.2115 -0.7917 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700809712.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:29 Heat of formation + Delta-G solvation = -76.608989 kcal Electronic energy + Delta-G solvation = -21516.719618 eV Core-core repulsion = 18439.789628 eV Total energy + Delta-G solvation = -3076.929990 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.65752 -38.79189 -36.96947 -35.44334 -34.91710 -33.44895 -30.48470 -29.15022 -28.47906 -26.72641 -25.34580 -24.48168 -23.37297 -22.86709 -21.35257 -20.31113 -18.64842 -17.67867 -17.17153 -17.04415 -16.82551 -16.41121 -15.85732 -15.72914 -15.50122 -15.10433 -14.89834 -14.43357 -14.23615 -14.00716 -13.72696 -13.59029 -13.45962 -13.02919 -12.96306 -12.80806 -12.66190 -12.50633 -12.35139 -12.26924 -12.14934 -11.85448 -11.67868 -11.53362 -11.35745 -11.27716 -11.05836 -10.86390 -10.20258 -9.26323 -9.13131 -8.32405 -6.44573 1.38540 1.43532 1.51966 2.34431 2.96539 3.01116 3.12350 3.25187 3.77472 3.79295 3.94508 4.02038 4.20562 4.23233 4.27572 4.37799 4.46788 4.49658 4.52536 4.57076 4.63959 4.67899 4.75114 4.77967 4.81979 4.83252 4.94553 4.97937 5.03680 5.06079 5.06853 5.18325 5.22890 5.28126 5.34161 5.40115 5.49603 5.54535 5.96806 6.08914 6.13321 6.23104 6.43942 6.56924 6.85563 7.27700 8.79843 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.019914 B = 0.003748 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.738540 B = 7468.987275 C = 8120.166419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.555 5.555 3 C 0.058 3.942 4 C -0.115 4.115 5 C -0.120 4.120 6 C -0.106 4.106 7 C -0.107 4.107 8 H 0.052 0.948 9 C 0.072 3.928 10 N -0.700 5.700 11 C 0.076 3.924 12 C 0.054 3.946 13 O -0.397 6.397 14 C 0.209 3.791 15 C -0.548 4.548 16 H 0.058 0.942 17 C 0.008 3.992 18 N -0.931 5.931 19 Si 0.982 3.018 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.267 1.267 23 C 0.066 3.934 24 H 0.012 0.988 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.021 0.979 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.066 0.934 37 H 0.338 0.662 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.038 0.962 42 H -0.016 1.016 43 H -0.017 1.017 44 H 0.271 0.729 45 H 0.059 0.941 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.311 3.904 7.578 23.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.279 5.279 3 C -0.069 4.069 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.144 4.144 7 C -0.127 4.127 8 H 0.071 0.929 9 C -0.057 4.057 10 N -0.334 5.334 11 C -0.053 4.053 12 C -0.023 4.023 13 O -0.317 6.317 14 C 0.134 3.866 15 C -0.586 4.586 16 H 0.076 0.924 17 C -0.191 4.191 18 N -0.570 5.570 19 Si 0.804 3.196 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.192 1.192 23 C -0.061 4.061 24 H 0.030 0.970 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.039 0.961 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.158 0.842 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.001 0.999 43 H 0.001 0.999 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 22.112 4.340 7.631 23.791 hybrid contribution -1.002 -0.338 -0.605 1.218 sum 21.110 4.002 7.026 22.606 Atomic orbital electron populations 1.22301 0.87498 1.02098 0.99978 1.61980 1.07208 1.13098 1.45630 1.21869 0.96263 0.88044 1.00687 1.21413 0.94491 1.03219 0.96107 1.20587 1.02329 0.97681 0.95101 1.20527 0.94899 0.98157 1.00832 1.21424 0.97895 0.98080 0.95317 0.92925 1.21941 0.87543 0.97446 0.98753 1.60319 1.23832 1.42923 1.06327 1.21868 0.92707 0.94791 0.95935 1.22606 0.91114 0.89544 0.99029 1.87910 1.16998 1.34541 1.92245 1.19785 0.77807 0.95706 0.93273 1.21347 0.91725 0.95824 1.49676 0.92367 1.25941 0.98513 1.00461 0.94162 1.70055 1.10592 1.27006 1.49348 0.85260 0.76938 0.78068 0.79300 1.19010 1.19746 1.19156 1.21919 1.00989 0.95133 0.88108 0.96959 0.91619 0.91070 0.90853 0.96090 0.90678 0.89706 0.90402 0.93368 0.90769 0.91788 0.93634 0.91502 0.84219 0.91040 0.91299 0.93349 0.94414 0.99852 0.99925 0.92015 0.92220 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.40 127.69 1.20 1.94 16 2 N -0.56 -12.33 4.94 -927.23 -4.58 -16.91 16 3 C 0.06 1.14 4.99 85.26 0.43 1.57 16 4 C -0.11 -1.71 5.63 30.21 0.17 -1.54 16 5 C -0.12 -1.79 5.30 28.85 0.15 -1.63 16 6 C -0.11 -1.69 4.71 28.86 0.14 -1.56 16 7 C -0.11 -2.24 2.05 -11.17 -0.02 -2.26 16 8 H 0.05 1.44 6.69 -2.39 -0.02 1.43 16 9 C 0.07 1.62 5.04 86.30 0.43 2.06 16 10 N -0.70 -20.43 6.45 -513.88 -3.31 -23.75 16 11 C 0.08 2.22 6.07 86.31 0.52 2.75 16 12 C 0.05 2.06 6.22 71.98 0.45 2.51 16 13 O -0.40 -20.27 10.27 -148.98 -1.53 -21.80 16 14 C 0.21 12.21 5.69 71.23 0.41 12.61 16 15 C -0.55 -33.83 9.43 25.60 0.24 -33.58 16 16 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16 17 C 0.01 0.45 5.46 84.66 0.46 0.92 16 18 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16 19 Si 0.98 45.45 29.54 68.60 2.03 47.47 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 C 0.07 1.36 4.62 85.31 0.39 1.75 16 24 H 0.01 0.35 7.79 -2.39 -0.02 0.33 16 25 H 0.06 1.64 7.93 -2.39 -0.02 1.62 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 27 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.02 0.47 6.49 -2.39 -0.02 0.46 16 29 H 0.07 1.13 7.09 -2.38 -0.02 1.11 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.85 7.51 -2.39 -0.02 0.83 16 33 H 0.07 1.00 7.53 -2.39 -0.02 0.98 16 34 H 0.06 1.00 7.94 -2.39 -0.02 0.98 16 35 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 1.56 8.06 -2.39 -0.02 1.54 16 37 H 0.34 9.53 6.77 -89.69 -0.61 8.92 16 38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 42 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 43 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 44 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 45 H 0.06 1.31 5.48 -2.39 -0.01 1.29 16 46 H 0.08 1.46 6.61 -2.39 -0.02 1.44 16 Total: -1.00 -68.53 351.98 -1.82 -70.35 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.32 Total: 15.87 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: 4.97 Total: -14.47 kcal Atomic # 7 Polarization: -89.81 SS G_CDS: -7.61 Total: -97.42 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -1.53 Total: -21.80 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -68.53 -1.82 -70.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700809712.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.256 kcal (2) G-P(sol) polarization free energy of solvation -68.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds