Wall clock time and date at job start Mon Mar 30 2020 05:00:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46904 * 1
3 3 C 1.47997 * 111.00033 * 2 1
4 4 C 1.50442 * 112.82333 * 191.34681 * 3 2 1
5 5 C 1.54305 * 108.49509 * 93.73721 * 4 3 2
6 6 C 1.45881 * 112.19276 * 281.45419 * 5 4 3
7 7 C 1.54319 * 112.18105 * 61.11408 * 6 5 4
8 8 H 1.08993 * 109.62822 * 41.38337 * 7 6 5
9 9 C 1.52999 * 109.62856 * 161.78006 * 7 6 5
10 10 N 1.46906 * 109.46897 * 184.60654 * 9 7 6
11 11 C 1.46898 * 110.99888 * 179.97438 * 10 9 7
12 12 C 1.53007 * 109.46764 * 179.97438 * 11 10 9
13 13 O 1.42897 * 109.47046 * 65.00004 * 12 11 10
14 14 C 1.42901 * 113.99910 * 179.97438 * 13 12 11
15 15 C 1.50697 * 109.47277 * 180.02562 * 14 13 12
16 16 H 1.08000 * 119.99977 * 359.97438 * 15 14 13
17 17 C 1.37878 * 120.00140 * 179.97438 * 15 14 13
18 18 N 1.31506 * 120.00016 * 0.02562 * 17 15 14
19 19 Si 1.86799 * 119.99895 * 179.97438 * 17 15 14
20 20 H 1.48498 * 109.47210 * 60.00065 * 19 17 15
21 21 H 1.48503 * 109.47253 * 180.02562 * 19 17 15
22 22 H 1.48505 * 109.47350 * 300.00013 * 19 17 15
23 23 C 1.47752 * 110.83560 * 231.31262 * 2 1 3
24 24 H 1.08998 * 109.46927 * 63.94981 * 1 2 3
25 25 H 1.09000 * 109.46747 * 183.95157 * 1 2 3
26 26 H 1.08992 * 109.46962 * 303.95068 * 1 2 3
27 27 H 1.09007 * 108.80964 * 70.48929 * 3 2 1
28 28 H 1.08998 * 108.81368 * 312.21324 * 3 2 1
29 29 H 1.09004 * 109.63400 * 334.03614 * 4 3 2
30 30 H 1.09003 * 109.63395 * 213.44327 * 4 3 2
31 31 H 1.08999 * 108.93802 * 160.75335 * 5 4 3
32 32 H 1.09001 * 108.86350 * 42.10211 * 5 4 3
33 33 H 1.08999 * 108.93949 * 300.42081 * 6 5 4
34 34 H 1.08997 * 108.87119 * 181.76215 * 6 5 4
35 35 H 1.09000 * 109.47486 * 64.60678 * 9 7 6
36 36 H 1.09001 * 109.47362 * 304.59955 * 9 7 6
37 37 H 1.00902 * 110.99923 * 303.95801 * 10 9 7
38 38 H 1.08995 * 109.47296 * 299.99911 * 11 10 9
39 39 H 1.08997 * 109.47334 * 60.00212 * 11 10 9
40 40 H 1.08997 * 109.46702 * 184.99892 * 12 11 10
41 41 H 1.09002 * 109.47126 * 304.99895 * 12 11 10
42 42 H 1.09001 * 109.47039 * 299.99914 * 14 13 12
43 43 H 1.09003 * 109.47349 * 59.99836 * 14 13 12
44 44 H 0.96998 * 120.00342 * 179.97438 * 18 17 15
45 45 H 1.08999 * 108.87468 * 324.06270 * 23 2 1
46 46 H 1.08993 * 108.60132 * 205.87409 * 23 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9994 1.3817 0.0000
4 6 3.4778 1.4392 -0.2728
5 6 3.6882 1.6560 -1.7860
6 6 3.5145 0.4245 -2.5485
7 6 2.0920 -0.1556 -2.4020
8 1 1.3614 0.6523 -2.4402
9 6 1.8220 -1.1470 -3.5357
10 7 0.4313 -1.6136 -3.4573
11 6 0.1351 -2.5689 -4.5332
12 6 -1.3188 -3.0317 -4.4183
13 8 -2.1910 -1.9230 -4.6463
14 6 -3.5798 -2.2491 -4.5619
15 6 -4.4026 -1.0129 -4.8184
16 1 -3.9138 -0.0721 -5.0247
17 6 -5.7793 -1.0828 -4.7896
18 7 -6.3744 -2.2281 -4.5379
19 14 -6.7991 0.4498 -5.1068
20 1 -6.4948 0.9751 -6.4620
21 1 -8.2423 0.1109 -5.0193
22 1 -6.4710 1.4819 -4.0907
23 6 1.9946 -0.8632 -1.0779
24 1 -0.3633 0.4513 -0.9233
25 1 -0.3633 -1.0252 0.0708
26 1 -0.3633 0.5739 0.8524
27 1 1.8036 1.8333 0.9726
28 1 1.4782 1.9583 -0.7642
29 1 3.9431 0.5015 0.0310
30 1 3.9204 2.2673 0.2809
31 1 4.6963 2.0357 -1.9521
32 1 2.9694 2.3953 -2.1394
33 1 4.2355 -0.3137 -2.1973
34 1 3.7053 0.6319 -3.6014
35 1 2.4966 -1.9981 -3.4425
36 1 1.9869 -0.6560 -4.4948
37 1 0.2350 -2.0150 -2.5526
38 1 0.2882 -2.0873 -5.4990
39 1 0.7979 -3.4299 -4.4474
40 1 -1.5134 -3.8057 -5.1606
41 1 -1.4945 -3.4330 -3.4202
42 1 -3.8210 -3.0067 -5.3075
43 1 -3.8028 -2.6344 -3.5670
44 1 -7.3429 -2.2773 -4.5173
45 1 1.3395 -1.7273 -1.1886
46 1 2.9869 -1.2115 -0.7917
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000700809712.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:00:29
Heat of formation + Delta-G solvation = -76.608989 kcal
Electronic energy + Delta-G solvation = -21516.719618 eV
Core-core repulsion = 18439.789628 eV
Total energy + Delta-G solvation = -3076.929990 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-40.65752 -38.79189 -36.96947 -35.44334 -34.91710 -33.44895 -30.48470 -29.15022
-28.47906 -26.72641 -25.34580 -24.48168 -23.37297 -22.86709 -21.35257 -20.31113
-18.64842 -17.67867 -17.17153 -17.04415 -16.82551 -16.41121 -15.85732 -15.72914
-15.50122 -15.10433 -14.89834 -14.43357 -14.23615 -14.00716 -13.72696 -13.59029
-13.45962 -13.02919 -12.96306 -12.80806 -12.66190 -12.50633 -12.35139 -12.26924
-12.14934 -11.85448 -11.67868 -11.53362 -11.35745 -11.27716 -11.05836 -10.86390
-10.20258 -9.26323 -9.13131 -8.32405 -6.44573 1.38540 1.43532 1.51966
2.34431 2.96539 3.01116 3.12350 3.25187 3.77472 3.79295 3.94508
4.02038 4.20562 4.23233 4.27572 4.37799 4.46788 4.49658 4.52536
4.57076 4.63959 4.67899 4.75114 4.77967 4.81979 4.83252 4.94553
4.97937 5.03680 5.06079 5.06853 5.18325 5.22890 5.28126 5.34161
5.40115 5.49603 5.54535 5.96806 6.08914 6.13321 6.23104 6.43942
6.56924 6.85563 7.27700 8.79843
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.019914 B = 0.003748 C = 0.003447
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1405.738540 B = 7468.987275 C = 8120.166419
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 N -0.555 5.555
3 C 0.058 3.942
4 C -0.115 4.115
5 C -0.120 4.120
6 C -0.106 4.106
7 C -0.107 4.107
8 H 0.052 0.948
9 C 0.072 3.928
10 N -0.700 5.700
11 C 0.076 3.924
12 C 0.054 3.946
13 O -0.397 6.397
14 C 0.209 3.791
15 C -0.548 4.548
16 H 0.058 0.942
17 C 0.008 3.992
18 N -0.931 5.931
19 Si 0.982 3.018
20 H -0.265 1.265
21 H -0.273 1.273
22 H -0.267 1.267
23 C 0.066 3.934
24 H 0.012 0.988
25 H 0.065 0.935
26 H 0.071 0.929
27 H 0.073 0.927
28 H 0.021 0.979
29 H 0.075 0.925
30 H 0.084 0.916
31 H 0.077 0.923
32 H 0.048 0.952
33 H 0.074 0.926
34 H 0.063 0.937
35 H 0.046 0.954
36 H 0.066 0.934
37 H 0.338 0.662
38 H 0.071 0.929
39 H 0.069 0.931
40 H 0.048 0.952
41 H 0.038 0.962
42 H -0.016 1.016
43 H -0.017 1.017
44 H 0.271 0.729
45 H 0.059 0.941
46 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.311 3.904 7.578 23.885
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 N -0.279 5.279
3 C -0.069 4.069
4 C -0.152 4.152
5 C -0.157 4.157
6 C -0.144 4.144
7 C -0.127 4.127
8 H 0.071 0.929
9 C -0.057 4.057
10 N -0.334 5.334
11 C -0.053 4.053
12 C -0.023 4.023
13 O -0.317 6.317
14 C 0.134 3.866
15 C -0.586 4.586
16 H 0.076 0.924
17 C -0.191 4.191
18 N -0.570 5.570
19 Si 0.804 3.196
20 H -0.190 1.190
21 H -0.197 1.197
22 H -0.192 1.192
23 C -0.061 4.061
24 H 0.030 0.970
25 H 0.084 0.916
26 H 0.089 0.911
27 H 0.091 0.909
28 H 0.039 0.961
29 H 0.093 0.907
30 H 0.103 0.897
31 H 0.096 0.904
32 H 0.066 0.934
33 H 0.092 0.908
34 H 0.082 0.918
35 H 0.064 0.936
36 H 0.085 0.915
37 H 0.158 0.842
38 H 0.090 0.910
39 H 0.087 0.913
40 H 0.067 0.933
41 H 0.056 0.944
42 H 0.001 0.999
43 H 0.001 0.999
44 H 0.080 0.920
45 H 0.078 0.922
46 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 22.112 4.340 7.631 23.791
hybrid contribution -1.002 -0.338 -0.605 1.218
sum 21.110 4.002 7.026 22.606
Atomic orbital electron populations
1.22301 0.87498 1.02098 0.99978 1.61980 1.07208 1.13098 1.45630
1.21869 0.96263 0.88044 1.00687 1.21413 0.94491 1.03219 0.96107
1.20587 1.02329 0.97681 0.95101 1.20527 0.94899 0.98157 1.00832
1.21424 0.97895 0.98080 0.95317 0.92925 1.21941 0.87543 0.97446
0.98753 1.60319 1.23832 1.42923 1.06327 1.21868 0.92707 0.94791
0.95935 1.22606 0.91114 0.89544 0.99029 1.87910 1.16998 1.34541
1.92245 1.19785 0.77807 0.95706 0.93273 1.21347 0.91725 0.95824
1.49676 0.92367 1.25941 0.98513 1.00461 0.94162 1.70055 1.10592
1.27006 1.49348 0.85260 0.76938 0.78068 0.79300 1.19010 1.19746
1.19156 1.21919 1.00989 0.95133 0.88108 0.96959 0.91619 0.91070
0.90853 0.96090 0.90678 0.89706 0.90402 0.93368 0.90769 0.91788
0.93634 0.91502 0.84219 0.91040 0.91299 0.93349 0.94414 0.99852
0.99925 0.92015 0.92220 0.90001
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.74 9.40 127.69 1.20 1.94 16
2 N -0.56 -12.33 4.94 -927.23 -4.58 -16.91 16
3 C 0.06 1.14 4.99 85.26 0.43 1.57 16
4 C -0.11 -1.71 5.63 30.21 0.17 -1.54 16
5 C -0.12 -1.79 5.30 28.85 0.15 -1.63 16
6 C -0.11 -1.69 4.71 28.86 0.14 -1.56 16
7 C -0.11 -2.24 2.05 -11.17 -0.02 -2.26 16
8 H 0.05 1.44 6.69 -2.39 -0.02 1.43 16
9 C 0.07 1.62 5.04 86.30 0.43 2.06 16
10 N -0.70 -20.43 6.45 -513.88 -3.31 -23.75 16
11 C 0.08 2.22 6.07 86.31 0.52 2.75 16
12 C 0.05 2.06 6.22 71.98 0.45 2.51 16
13 O -0.40 -20.27 10.27 -148.98 -1.53 -21.80 16
14 C 0.21 12.21 5.69 71.23 0.41 12.61 16
15 C -0.55 -33.83 9.43 25.60 0.24 -33.58 16
16 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16
17 C 0.01 0.45 5.46 84.66 0.46 0.92 16
18 N -0.93 -57.05 13.29 21.45 0.28 -56.77 16
19 Si 0.98 45.45 29.54 68.60 2.03 47.47 16
20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16
21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16
22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16
23 C 0.07 1.36 4.62 85.31 0.39 1.75 16
24 H 0.01 0.35 7.79 -2.39 -0.02 0.33 16
25 H 0.06 1.64 7.93 -2.39 -0.02 1.62 16
26 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16
27 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16
28 H 0.02 0.47 6.49 -2.39 -0.02 0.46 16
29 H 0.07 1.13 7.09 -2.38 -0.02 1.11 16
30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16
31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16
32 H 0.05 0.85 7.51 -2.39 -0.02 0.83 16
33 H 0.07 1.00 7.53 -2.39 -0.02 0.98 16
34 H 0.06 1.00 7.94 -2.39 -0.02 0.98 16
35 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16
36 H 0.07 1.56 8.06 -2.39 -0.02 1.54 16
37 H 0.34 9.53 6.77 -89.69 -0.61 8.92 16
38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16
39 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16
40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16
41 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16
42 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16
43 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16
44 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16
45 H 0.06 1.31 5.48 -2.39 -0.01 1.29 16
46 H 0.08 1.46 6.61 -2.39 -0.02 1.44 16
Total: -1.00 -68.53 351.98 -1.82 -70.35
By element:
Atomic # 1 Polarization: 15.55 SS G_CDS: 0.32 Total: 15.87 kcal
Atomic # 6 Polarization: -19.45 SS G_CDS: 4.97 Total: -14.47 kcal
Atomic # 7 Polarization: -89.81 SS G_CDS: -7.61 Total: -97.42 kcal
Atomic # 8 Polarization: -20.27 SS G_CDS: -1.53 Total: -21.80 kcal
Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal
Total: -68.53 -1.82 -70.35 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000700809712.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.256 kcal
(2) G-P(sol) polarization free energy of solvation -68.530 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.786 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.823 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.353 kcal
(6) G-S(sol) free energy of system = (1) + (5) -76.609 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds