Wall clock time and date at job start Mon Mar 30 2020 05:01:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46904 * 1
3 3 C 1.46896 * 110.99977 * 2 1
4 4 C 1.46905 * 110.99477 * 123.95508 * 2 1 3
5 5 C 1.53001 * 109.46749 * 170.00107 * 4 2 1
6 6 C 1.52995 * 109.47199 * 179.97438 * 5 4 2
7 7 H 1.09009 * 110.42094 * 57.31005 * 6 5 4
8 8 C 1.54904 * 110.37567 * 179.62610 * 6 5 4
9 9 C 1.55133 * 101.65430 * 155.90098 * 8 6 5
10 10 C 1.54312 * 103.02081 * 324.34387 * 9 8 6
11 11 N 1.47445 * 107.23255 * 22.28538 * 10 9 8
12 12 C 1.46901 * 111.00407 * 123.25654 * 11 10 9
13 13 C 1.53001 * 109.46904 * 69.87357 * 12 11 10
14 14 O 1.42901 * 109.47084 * 65.00410 * 13 12 11
15 15 C 1.42895 * 113.99948 * 179.97438 * 14 13 12
16 16 C 1.50706 * 109.47147 * 179.97438 * 15 14 13
17 17 H 1.07999 * 119.99515 * 0.02562 * 16 15 14
18 18 C 1.37870 * 120.00176 * 180.02562 * 16 15 14
19 19 N 1.31520 * 119.99883 * 0.02562 * 18 16 15
20 20 Si 1.86800 * 120.00043 * 180.02562 * 18 16 15
21 21 H 1.48494 * 109.47288 * 59.99994 * 20 18 16
22 22 H 1.48503 * 109.47086 * 179.97438 * 20 18 16
23 23 H 1.48505 * 109.46819 * 299.99648 * 20 18 16
24 24 H 1.09002 * 109.47262 * 296.04482 * 1 2 3
25 25 H 1.09000 * 109.46593 * 56.04551 * 1 2 3
26 26 H 1.09005 * 109.47227 * 176.04255 * 1 2 3
27 27 H 1.09000 * 109.46971 * 183.95197 * 3 2 1
28 28 H 1.08997 * 109.47270 * 303.95199 * 3 2 1
29 29 H 1.09001 * 109.47055 * 63.95951 * 3 2 1
30 30 H 1.09000 * 109.47235 * 50.00485 * 4 2 1
31 31 H 1.09001 * 109.46907 * 289.99795 * 4 2 1
32 32 H 1.09001 * 109.47329 * 59.99822 * 5 4 2
33 33 H 1.09000 * 109.47049 * 300.00075 * 5 4 2
34 34 H 1.08999 * 110.99013 * 37.80158 * 8 6 5
35 35 H 1.09006 * 110.98722 * 273.98982 * 8 6 5
36 36 H 1.09000 * 110.70647 * 205.96267 * 9 8 6
37 37 H 1.09005 * 110.86094 * 82.80053 * 9 8 6
38 38 H 1.08995 * 109.89094 * 262.88118 * 10 9 8
39 39 H 1.09001 * 110.02996 * 141.76304 * 10 9 8
40 40 H 1.09001 * 109.47133 * 309.87701 * 12 11 10
41 41 H 1.08998 * 109.47415 * 189.87588 * 12 11 10
42 42 H 1.08995 * 109.47456 * 304.99945 * 13 12 11
43 43 H 1.09003 * 109.47124 * 185.00461 * 13 12 11
44 44 H 1.09001 * 109.46798 * 60.00190 * 15 14 13
45 45 H 1.09000 * 109.47736 * 300.00432 * 15 14 13
46 46 H 0.97004 * 119.99507 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.9954 -0.7661 1.1376
5 6 3.5044 -0.9554 0.9704
6 6 4.0528 -1.7527 2.1555
7 1 3.5425 -2.7125 2.2370
8 6 5.5796 -1.9649 2.0026
9 6 6.0153 -2.1795 3.4759
10 6 5.0829 -1.2292 4.2562
11 7 3.9024 -0.9819 3.4082
12 6 2.6647 -1.3511 4.1081
13 6 2.4064 -0.3599 5.2446
14 8 2.1592 0.9373 4.6983
15 6 1.9042 1.9428 5.6811
16 6 1.6590 3.2631 4.9970
17 1 1.6940 3.3276 3.9195
18 6 1.3901 4.3885 5.7467
19 7 1.3480 4.3099 7.0588
20 14 1.0855 6.0248 4.8987
21 1 -0.0891 5.9045 3.9981
22 1 0.8206 7.0698 5.9200
23 1 2.2823 6.4007 4.1039
24 1 -0.3634 0.4512 0.9233
25 1 -0.3632 0.5740 -0.8525
26 1 -0.3634 -1.0253 -0.0709
27 1 3.0828 1.3432 -0.0708
28 1 1.5899 1.9163 -0.8524
29 1 1.7045 1.8723 0.9234
30 1 1.5089 -1.7407 1.1756
31 1 1.7974 -0.2248 2.0628
32 1 3.9909 0.0192 0.9324
33 1 3.7023 -1.4966 0.0452
34 1 6.0562 -1.0808 1.5792
35 1 5.7926 -2.8478 1.3998
36 1 7.0585 -1.8957 3.6145
37 1 5.8549 -3.2135 3.7814
38 1 5.5968 -0.2897 4.4593
39 1 4.7756 -1.6937 5.1931
40 1 2.7652 -2.3560 4.5182
41 1 1.8299 -1.3264 3.4076
42 1 3.2789 -0.3193 5.8966
43 1 1.5384 -0.6837 5.8189
44 1 2.7661 2.0312 6.3424
45 1 1.0257 1.6666 6.2642
46 1 1.1584 5.1017 7.5862
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000701503524.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:01:18
Heat of formation + Delta-G solvation = -43.784513 kcal
Electronic energy + Delta-G solvation = -22146.090004 eV
Core-core repulsion = 19070.583390 eV
Total energy + Delta-G solvation = -3075.506614 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-39.42925 -37.10006 -36.46070 -32.96745 -32.14149 -32.03640 -28.14132 -27.55405
-27.25862 -26.49014 -24.00684 -22.48103 -22.20619 -20.66111 -20.42460 -19.69245
-16.61999 -16.32106 -15.97473 -15.27004 -15.15105 -14.77164 -14.47815 -14.37446
-14.11744 -13.91081 -13.53986 -12.97146 -12.63001 -12.52641 -12.40063 -12.03866
-11.89391 -11.83263 -11.55921 -11.42478 -11.22568 -11.08439 -10.99995 -10.81534
-10.71187 -10.62980 -10.56278 -10.33268 -10.21639 -9.91152 -9.06220 -8.75209
-8.10520 -8.07569 -8.00626 -6.07198 -4.08091 3.33738 3.36272 3.40262
4.07774 4.17062 4.37815 4.67061 4.70674 4.93783 5.01254 5.15909
5.29230 5.32827 5.37113 5.46293 5.50576 5.57936 5.60905 5.63109
5.70258 5.77347 5.84436 5.87683 5.88230 5.97370 6.00610 6.02845
6.07403 6.10564 6.13836 6.22663 6.27869 6.31591 6.47422 6.51575
7.15493 7.20262 7.25514 7.28958 7.36023 7.48799 7.83857 8.21372
8.67070 9.06249 9.56544 11.04476
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.013895 B = 0.005725 C = 0.004555
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2014.604530 B = 4889.434049 C = 6146.226909
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 N -0.550 5.550
3 C 0.021 3.979
4 C 0.046 3.954
5 C -0.095 4.095
6 C 0.073 3.927
7 H 0.049 0.951
8 C -0.122 4.122
9 C -0.142 4.142
10 C 0.043 3.957
11 N -0.508 5.508
12 C 0.050 3.950
13 C 0.069 3.931
14 O -0.379 6.379
15 C 0.196 3.804
16 C -0.509 4.509
17 H 0.064 0.936
18 C 0.056 3.944
19 N -0.900 5.900
20 Si 0.906 3.094
21 H -0.275 1.275
22 H -0.286 1.286
23 H -0.275 1.275
24 H 0.030 0.970
25 H 0.063 0.937
26 H 0.061 0.939
27 H 0.068 0.932
28 H 0.059 0.941
29 H 0.038 0.962
30 H 0.059 0.941
31 H 0.065 0.935
32 H 0.073 0.927
33 H 0.064 0.936
34 H 0.077 0.923
35 H 0.069 0.931
36 H 0.072 0.928
37 H 0.062 0.938
38 H 0.078 0.922
39 H 0.052 0.948
40 H 0.037 0.963
41 H 0.083 0.917
42 H 0.035 0.965
43 H 0.036 0.964
44 H 0.002 0.998
45 H 0.000 1.000
46 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.037 -13.994 -10.286 18.083
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 N -0.273 5.273
3 C -0.127 4.127
4 C -0.081 4.081
5 C -0.133 4.133
6 C -0.036 4.036
7 H 0.067 0.933
8 C -0.160 4.160
9 C -0.180 4.180
10 C -0.085 4.085
11 N -0.232 5.232
12 C -0.078 4.078
13 C -0.010 4.010
14 O -0.298 6.298
15 C 0.121 3.879
16 C -0.547 4.547
17 H 0.083 0.917
18 C -0.145 4.145
19 N -0.540 5.540
20 Si 0.733 3.267
21 H -0.201 1.201
22 H -0.212 1.212
23 H -0.200 1.200
24 H 0.049 0.951
25 H 0.082 0.918
26 H 0.080 0.920
27 H 0.087 0.913
28 H 0.078 0.922
29 H 0.057 0.943
30 H 0.078 0.922
31 H 0.083 0.917
32 H 0.091 0.909
33 H 0.083 0.917
34 H 0.095 0.905
35 H 0.088 0.912
36 H 0.090 0.910
37 H 0.081 0.919
38 H 0.096 0.904
39 H 0.070 0.930
40 H 0.055 0.945
41 H 0.102 0.898
42 H 0.053 0.947
43 H 0.054 0.946
44 H 0.020 0.980
45 H 0.018 0.982
46 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges 5.105 -13.527 -10.854 18.079
hybrid contribution -0.482 0.384 1.122 1.279
sum 4.624 -13.144 -9.732 16.996
Atomic orbital electron populations
1.22348 0.87911 1.01525 1.00727 1.62088 1.07490 1.14343 1.43419
1.22410 1.00801 0.88645 1.00874 1.22346 0.95289 0.97568 0.92938
1.21483 0.94976 1.00887 0.95986 1.22568 0.95310 0.94669 0.91069
0.93294 1.22703 0.95088 1.01876 0.96344 1.22781 1.00123 0.99432
0.95701 1.22838 0.91368 0.99033 0.95255 1.63448 1.01279 1.54695
1.03800 1.22475 0.93348 0.95134 0.96881 1.22229 0.98037 0.86575
0.94124 1.87924 1.91346 1.15763 1.34794 1.20145 0.94330 0.85715
0.87707 1.20993 1.47740 0.91940 0.94031 0.91741 1.24933 0.95462
0.99262 0.94841 1.69960 1.49535 1.29927 1.04554 0.86436 0.78903
0.82395 0.78982 1.20094 1.21185 1.19999 0.95132 0.91816 0.91975
0.91289 0.92207 0.94310 0.92237 0.91710 0.90880 0.91703 0.90477
0.91234 0.90973 0.91925 0.90381 0.92987 0.94515 0.89828 0.94720
0.94633 0.98010 0.98188 0.92702
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.30 9.57 60.07 0.57 0.88 16
2 N -0.55 -7.81 5.02 -251.25 -1.26 -9.08 16
3 C 0.02 0.30 9.32 60.06 0.56 0.86 16
4 C 0.05 0.66 3.76 -3.82 -0.01 0.64 16
5 C -0.10 -1.23 4.87 -26.73 -0.13 -1.36 16
6 C 0.07 0.90 2.58 -66.19 -0.17 0.73 16
7 H 0.05 0.58 7.81 -51.92 -0.41 0.17 16
8 C -0.12 -1.29 6.49 -24.60 -0.16 -1.45 16
9 C -0.14 -1.49 6.94 -24.92 -0.17 -1.66 16
10 C 0.04 0.58 6.14 -2.84 -0.02 0.56 16
11 N -0.51 -7.66 4.57 -223.39 -1.02 -8.68 16
12 C 0.05 0.76 4.43 -3.82 -0.02 0.75 16
13 C 0.07 1.31 6.04 37.16 0.22 1.53 16
14 O -0.38 -9.27 10.27 -35.23 -0.36 -9.63 16
15 C 0.20 5.47 5.69 36.01 0.20 5.67 16
16 C -0.51 -15.19 9.43 -34.44 -0.32 -15.52 16
17 H 0.06 1.92 7.81 -52.49 -0.41 1.51 16
18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
19 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16
20 Si 0.91 22.17 29.54 -169.99 -5.02 17.15 16
21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16
24 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16
25 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16
26 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16
27 H 0.07 0.97 6.47 -51.93 -0.34 0.63 16
28 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16
29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16
30 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16
31 H 0.06 1.14 5.98 -51.93 -0.31 0.82 16
32 H 0.07 1.06 6.55 -51.93 -0.34 0.72 16
33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
34 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16
35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16
36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16
39 H 0.05 0.68 6.94 -51.93 -0.36 0.32 16
40 H 0.04 0.49 7.96 -51.93 -0.41 0.07 16
41 H 0.08 1.30 5.29 -51.93 -0.27 1.03 16
42 H 0.03 0.65 7.04 -51.93 -0.37 0.29 16
43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16
44 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16
45 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16
46 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
LS Contribution 356.81 15.07 5.38 5.38
Total: -1.00 -31.45 356.81 -9.77 -41.23
By element:
Atomic # 1 Polarization: 5.72 SS G_CDS: -8.68 Total: -2.96 kcal
Atomic # 6 Polarization: -7.29 SS G_CDS: 0.46 Total: -6.83 kcal
Atomic # 7 Polarization: -42.79 SS G_CDS: -1.55 Total: -44.34 kcal
Atomic # 8 Polarization: -9.27 SS G_CDS: -0.36 Total: -9.63 kcal
Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal
Total LS contribution 5.38 Total: 5.38 kcal
Total: -31.45 -9.77 -41.23 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701503524.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.559 kcal
(2) G-P(sol) polarization free energy of solvation -31.453 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.011 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.785 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds