Wall clock time and date at job start Mon Mar 30 2020 05:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99977 * 2 1 4 4 C 1.46905 * 110.99477 * 123.95508 * 2 1 3 5 5 C 1.53001 * 109.46749 * 170.00107 * 4 2 1 6 6 C 1.52995 * 109.47199 * 179.97438 * 5 4 2 7 7 H 1.09009 * 110.42094 * 57.31005 * 6 5 4 8 8 C 1.54904 * 110.37567 * 179.62610 * 6 5 4 9 9 C 1.55133 * 101.65430 * 155.90098 * 8 6 5 10 10 C 1.54312 * 103.02081 * 324.34387 * 9 8 6 11 11 N 1.47445 * 107.23255 * 22.28538 * 10 9 8 12 12 C 1.46901 * 111.00407 * 123.25654 * 11 10 9 13 13 C 1.53001 * 109.46904 * 69.87357 * 12 11 10 14 14 O 1.42901 * 109.47084 * 65.00410 * 13 12 11 15 15 C 1.42895 * 113.99948 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47147 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99515 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00176 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47288 * 59.99994 * 20 18 16 22 22 H 1.48503 * 109.47086 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46819 * 299.99648 * 20 18 16 24 24 H 1.09002 * 109.47262 * 296.04482 * 1 2 3 25 25 H 1.09000 * 109.46593 * 56.04551 * 1 2 3 26 26 H 1.09005 * 109.47227 * 176.04255 * 1 2 3 27 27 H 1.09000 * 109.46971 * 183.95197 * 3 2 1 28 28 H 1.08997 * 109.47270 * 303.95199 * 3 2 1 29 29 H 1.09001 * 109.47055 * 63.95951 * 3 2 1 30 30 H 1.09000 * 109.47235 * 50.00485 * 4 2 1 31 31 H 1.09001 * 109.46907 * 289.99795 * 4 2 1 32 32 H 1.09001 * 109.47329 * 59.99822 * 5 4 2 33 33 H 1.09000 * 109.47049 * 300.00075 * 5 4 2 34 34 H 1.08999 * 110.99013 * 37.80158 * 8 6 5 35 35 H 1.09006 * 110.98722 * 273.98982 * 8 6 5 36 36 H 1.09000 * 110.70647 * 205.96267 * 9 8 6 37 37 H 1.09005 * 110.86094 * 82.80053 * 9 8 6 38 38 H 1.08995 * 109.89094 * 262.88118 * 10 9 8 39 39 H 1.09001 * 110.02996 * 141.76304 * 10 9 8 40 40 H 1.09001 * 109.47133 * 309.87701 * 12 11 10 41 41 H 1.08998 * 109.47415 * 189.87588 * 12 11 10 42 42 H 1.08995 * 109.47456 * 304.99945 * 13 12 11 43 43 H 1.09003 * 109.47124 * 185.00461 * 13 12 11 44 44 H 1.09001 * 109.46798 * 60.00190 * 15 14 13 45 45 H 1.09000 * 109.47736 * 300.00432 * 15 14 13 46 46 H 0.97004 * 119.99507 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 3.5044 -0.9554 0.9704 6 6 4.0528 -1.7527 2.1555 7 1 3.5425 -2.7125 2.2370 8 6 5.5796 -1.9649 2.0026 9 6 6.0153 -2.1795 3.4759 10 6 5.0829 -1.2292 4.2562 11 7 3.9024 -0.9819 3.4082 12 6 2.6647 -1.3511 4.1081 13 6 2.4064 -0.3599 5.2446 14 8 2.1592 0.9373 4.6983 15 6 1.9042 1.9428 5.6811 16 6 1.6590 3.2631 4.9970 17 1 1.6940 3.3276 3.9195 18 6 1.3901 4.3885 5.7467 19 7 1.3480 4.3099 7.0588 20 14 1.0855 6.0248 4.8987 21 1 -0.0891 5.9045 3.9981 22 1 0.8206 7.0698 5.9200 23 1 2.2823 6.4007 4.1039 24 1 -0.3634 0.4512 0.9233 25 1 -0.3632 0.5740 -0.8525 26 1 -0.3634 -1.0253 -0.0709 27 1 3.0828 1.3432 -0.0708 28 1 1.5899 1.9163 -0.8524 29 1 1.7045 1.8723 0.9234 30 1 1.5089 -1.7407 1.1756 31 1 1.7974 -0.2248 2.0628 32 1 3.9909 0.0192 0.9324 33 1 3.7023 -1.4966 0.0452 34 1 6.0562 -1.0808 1.5792 35 1 5.7926 -2.8478 1.3998 36 1 7.0585 -1.8957 3.6145 37 1 5.8549 -3.2135 3.7814 38 1 5.5968 -0.2897 4.4593 39 1 4.7756 -1.6937 5.1931 40 1 2.7652 -2.3560 4.5182 41 1 1.8299 -1.3264 3.4076 42 1 3.2789 -0.3193 5.8966 43 1 1.5384 -0.6837 5.8189 44 1 2.7661 2.0312 6.3424 45 1 1.0257 1.6666 6.2642 46 1 1.1584 5.1017 7.5862 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701503524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:18 Heat of formation + Delta-G solvation = -43.784513 kcal Electronic energy + Delta-G solvation = -22146.090004 eV Core-core repulsion = 19070.583390 eV Total energy + Delta-G solvation = -3075.506614 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.42925 -37.10006 -36.46070 -32.96745 -32.14149 -32.03640 -28.14132 -27.55405 -27.25862 -26.49014 -24.00684 -22.48103 -22.20619 -20.66111 -20.42460 -19.69245 -16.61999 -16.32106 -15.97473 -15.27004 -15.15105 -14.77164 -14.47815 -14.37446 -14.11744 -13.91081 -13.53986 -12.97146 -12.63001 -12.52641 -12.40063 -12.03866 -11.89391 -11.83263 -11.55921 -11.42478 -11.22568 -11.08439 -10.99995 -10.81534 -10.71187 -10.62980 -10.56278 -10.33268 -10.21639 -9.91152 -9.06220 -8.75209 -8.10520 -8.07569 -8.00626 -6.07198 -4.08091 3.33738 3.36272 3.40262 4.07774 4.17062 4.37815 4.67061 4.70674 4.93783 5.01254 5.15909 5.29230 5.32827 5.37113 5.46293 5.50576 5.57936 5.60905 5.63109 5.70258 5.77347 5.84436 5.87683 5.88230 5.97370 6.00610 6.02845 6.07403 6.10564 6.13836 6.22663 6.27869 6.31591 6.47422 6.51575 7.15493 7.20262 7.25514 7.28958 7.36023 7.48799 7.83857 8.21372 8.67070 9.06249 9.56544 11.04476 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.013895 B = 0.005725 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.604530 B = 4889.434049 C = 6146.226909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.550 5.550 3 C 0.021 3.979 4 C 0.046 3.954 5 C -0.095 4.095 6 C 0.073 3.927 7 H 0.049 0.951 8 C -0.122 4.122 9 C -0.142 4.142 10 C 0.043 3.957 11 N -0.508 5.508 12 C 0.050 3.950 13 C 0.069 3.931 14 O -0.379 6.379 15 C 0.196 3.804 16 C -0.509 4.509 17 H 0.064 0.936 18 C 0.056 3.944 19 N -0.900 5.900 20 Si 0.906 3.094 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.030 0.970 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.037 0.963 41 H 0.083 0.917 42 H 0.035 0.965 43 H 0.036 0.964 44 H 0.002 0.998 45 H 0.000 1.000 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.037 -13.994 -10.286 18.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.273 5.273 3 C -0.127 4.127 4 C -0.081 4.081 5 C -0.133 4.133 6 C -0.036 4.036 7 H 0.067 0.933 8 C -0.160 4.160 9 C -0.180 4.180 10 C -0.085 4.085 11 N -0.232 5.232 12 C -0.078 4.078 13 C -0.010 4.010 14 O -0.298 6.298 15 C 0.121 3.879 16 C -0.547 4.547 17 H 0.083 0.917 18 C -0.145 4.145 19 N -0.540 5.540 20 Si 0.733 3.267 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.200 1.200 24 H 0.049 0.951 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.102 0.898 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.020 0.980 45 H 0.018 0.982 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.105 -13.527 -10.854 18.079 hybrid contribution -0.482 0.384 1.122 1.279 sum 4.624 -13.144 -9.732 16.996 Atomic orbital electron populations 1.22348 0.87911 1.01525 1.00727 1.62088 1.07490 1.14343 1.43419 1.22410 1.00801 0.88645 1.00874 1.22346 0.95289 0.97568 0.92938 1.21483 0.94976 1.00887 0.95986 1.22568 0.95310 0.94669 0.91069 0.93294 1.22703 0.95088 1.01876 0.96344 1.22781 1.00123 0.99432 0.95701 1.22838 0.91368 0.99033 0.95255 1.63448 1.01279 1.54695 1.03800 1.22475 0.93348 0.95134 0.96881 1.22229 0.98037 0.86575 0.94124 1.87924 1.91346 1.15763 1.34794 1.20145 0.94330 0.85715 0.87707 1.20993 1.47740 0.91940 0.94031 0.91741 1.24933 0.95462 0.99262 0.94841 1.69960 1.49535 1.29927 1.04554 0.86436 0.78903 0.82395 0.78982 1.20094 1.21185 1.19999 0.95132 0.91816 0.91975 0.91289 0.92207 0.94310 0.92237 0.91710 0.90880 0.91703 0.90477 0.91234 0.90973 0.91925 0.90381 0.92987 0.94515 0.89828 0.94720 0.94633 0.98010 0.98188 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.57 60.07 0.57 0.88 16 2 N -0.55 -7.81 5.02 -251.25 -1.26 -9.08 16 3 C 0.02 0.30 9.32 60.06 0.56 0.86 16 4 C 0.05 0.66 3.76 -3.82 -0.01 0.64 16 5 C -0.10 -1.23 4.87 -26.73 -0.13 -1.36 16 6 C 0.07 0.90 2.58 -66.19 -0.17 0.73 16 7 H 0.05 0.58 7.81 -51.92 -0.41 0.17 16 8 C -0.12 -1.29 6.49 -24.60 -0.16 -1.45 16 9 C -0.14 -1.49 6.94 -24.92 -0.17 -1.66 16 10 C 0.04 0.58 6.14 -2.84 -0.02 0.56 16 11 N -0.51 -7.66 4.57 -223.39 -1.02 -8.68 16 12 C 0.05 0.76 4.43 -3.82 -0.02 0.75 16 13 C 0.07 1.31 6.04 37.16 0.22 1.53 16 14 O -0.38 -9.27 10.27 -35.23 -0.36 -9.63 16 15 C 0.20 5.47 5.69 36.01 0.20 5.67 16 16 C -0.51 -15.19 9.43 -34.44 -0.32 -15.52 16 17 H 0.06 1.92 7.81 -52.49 -0.41 1.51 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 20 Si 0.91 22.17 29.54 -169.99 -5.02 17.15 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 26 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 27 H 0.07 0.97 6.47 -51.93 -0.34 0.63 16 28 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16 31 H 0.06 1.14 5.98 -51.93 -0.31 0.82 16 32 H 0.07 1.06 6.55 -51.93 -0.34 0.72 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.68 6.94 -51.93 -0.36 0.32 16 40 H 0.04 0.49 7.96 -51.93 -0.41 0.07 16 41 H 0.08 1.30 5.29 -51.93 -0.27 1.03 16 42 H 0.03 0.65 7.04 -51.93 -0.37 0.29 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 45 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 46 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 356.81 15.07 5.38 5.38 Total: -1.00 -31.45 356.81 -9.77 -41.23 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -8.68 Total: -2.96 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 0.46 Total: -6.83 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -1.55 Total: -44.34 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.36 Total: -9.63 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.45 -9.77 -41.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701503524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.559 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds