Wall clock time and date at job start Mon Mar 30 2020 05:01:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46904 * 1
3 3 C 1.46896 * 110.99977 * 2 1
4 4 C 1.46905 * 110.99477 * 123.95508 * 2 1 3
5 5 C 1.53001 * 109.46749 * 170.00107 * 4 2 1
6 6 C 1.52995 * 109.47199 * 179.97438 * 5 4 2
7 7 H 1.09009 * 110.42094 * 57.31005 * 6 5 4
8 8 C 1.54904 * 110.37567 * 179.62610 * 6 5 4
9 9 C 1.55133 * 101.65430 * 155.90098 * 8 6 5
10 10 C 1.54312 * 103.02081 * 324.34387 * 9 8 6
11 11 N 1.47445 * 107.23255 * 22.28538 * 10 9 8
12 12 C 1.46901 * 111.00407 * 123.25654 * 11 10 9
13 13 C 1.53001 * 109.46904 * 69.87357 * 12 11 10
14 14 O 1.42901 * 109.47084 * 65.00410 * 13 12 11
15 15 C 1.42895 * 113.99948 * 179.97438 * 14 13 12
16 16 C 1.50706 * 109.47147 * 179.97438 * 15 14 13
17 17 H 1.07999 * 119.99515 * 0.02562 * 16 15 14
18 18 C 1.37870 * 120.00176 * 180.02562 * 16 15 14
19 19 N 1.31520 * 119.99883 * 0.02562 * 18 16 15
20 20 Si 1.86800 * 120.00043 * 180.02562 * 18 16 15
21 21 H 1.48494 * 109.47288 * 59.99994 * 20 18 16
22 22 H 1.48503 * 109.47086 * 179.97438 * 20 18 16
23 23 H 1.48505 * 109.46819 * 299.99648 * 20 18 16
24 24 H 1.09002 * 109.47262 * 296.04482 * 1 2 3
25 25 H 1.09000 * 109.46593 * 56.04551 * 1 2 3
26 26 H 1.09005 * 109.47227 * 176.04255 * 1 2 3
27 27 H 1.09000 * 109.46971 * 183.95197 * 3 2 1
28 28 H 1.08997 * 109.47270 * 303.95199 * 3 2 1
29 29 H 1.09001 * 109.47055 * 63.95951 * 3 2 1
30 30 H 1.09000 * 109.47235 * 50.00485 * 4 2 1
31 31 H 1.09001 * 109.46907 * 289.99795 * 4 2 1
32 32 H 1.09001 * 109.47329 * 59.99822 * 5 4 2
33 33 H 1.09000 * 109.47049 * 300.00075 * 5 4 2
34 34 H 1.08999 * 110.99013 * 37.80158 * 8 6 5
35 35 H 1.09006 * 110.98722 * 273.98982 * 8 6 5
36 36 H 1.09000 * 110.70647 * 205.96267 * 9 8 6
37 37 H 1.09005 * 110.86094 * 82.80053 * 9 8 6
38 38 H 1.08995 * 109.89094 * 262.88118 * 10 9 8
39 39 H 1.09001 * 110.02996 * 141.76304 * 10 9 8
40 40 H 1.09001 * 109.47133 * 309.87701 * 12 11 10
41 41 H 1.08998 * 109.47415 * 189.87588 * 12 11 10
42 42 H 1.08995 * 109.47456 * 304.99945 * 13 12 11
43 43 H 1.09003 * 109.47124 * 185.00461 * 13 12 11
44 44 H 1.09001 * 109.46798 * 60.00190 * 15 14 13
45 45 H 1.09000 * 109.47736 * 300.00432 * 15 14 13
46 46 H 0.97004 * 119.99507 * 180.02562 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9955 1.3714 0.0000
4 6 1.9954 -0.7661 1.1376
5 6 3.5044 -0.9554 0.9704
6 6 4.0528 -1.7527 2.1555
7 1 3.5425 -2.7125 2.2370
8 6 5.5796 -1.9649 2.0026
9 6 6.0153 -2.1795 3.4759
10 6 5.0829 -1.2292 4.2562
11 7 3.9024 -0.9819 3.4082
12 6 2.6647 -1.3511 4.1081
13 6 2.4064 -0.3599 5.2446
14 8 2.1592 0.9373 4.6983
15 6 1.9042 1.9428 5.6811
16 6 1.6590 3.2631 4.9970
17 1 1.6940 3.3276 3.9195
18 6 1.3901 4.3885 5.7467
19 7 1.3480 4.3099 7.0588
20 14 1.0855 6.0248 4.8987
21 1 -0.0891 5.9045 3.9981
22 1 0.8206 7.0698 5.9200
23 1 2.2823 6.4007 4.1039
24 1 -0.3634 0.4512 0.9233
25 1 -0.3632 0.5740 -0.8525
26 1 -0.3634 -1.0253 -0.0709
27 1 3.0828 1.3432 -0.0708
28 1 1.5899 1.9163 -0.8524
29 1 1.7045 1.8723 0.9234
30 1 1.5089 -1.7407 1.1756
31 1 1.7974 -0.2248 2.0628
32 1 3.9909 0.0192 0.9324
33 1 3.7023 -1.4966 0.0452
34 1 6.0562 -1.0808 1.5792
35 1 5.7926 -2.8478 1.3998
36 1 7.0585 -1.8957 3.6145
37 1 5.8549 -3.2135 3.7814
38 1 5.5968 -0.2897 4.4593
39 1 4.7756 -1.6937 5.1931
40 1 2.7652 -2.3560 4.5182
41 1 1.8299 -1.3264 3.4076
42 1 3.2789 -0.3193 5.8966
43 1 1.5384 -0.6837 5.8189
44 1 2.7661 2.0312 6.3424
45 1 1.0257 1.6666 6.2642
46 1 1.1584 5.1017 7.5862
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000701503524.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:01:18
Heat of formation + Delta-G solvation = -65.948678 kcal
Electronic energy + Delta-G solvation = -22147.051114 eV
Core-core repulsion = 19070.583390 eV
Total energy + Delta-G solvation = -3076.467724 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-40.51836 -38.46219 -38.08131 -35.02846 -33.57464 -33.06872 -29.89474 -28.59999
-28.41247 -28.27182 -25.13899 -24.50023 -23.62967 -21.68983 -21.59944 -20.76338
-18.63002 -17.73943 -17.48385 -16.83715 -16.39689 -16.28151 -16.00249 -15.69801
-15.57291 -15.23156 -14.82323 -14.36786 -14.04884 -13.73115 -13.62453 -13.46841
-13.20164 -13.09388 -12.88714 -12.81747 -12.75878 -12.62448 -12.49174 -12.21874
-12.09257 -11.99932 -11.75161 -11.52093 -11.42552 -11.34575 -11.24306 -10.87032
-10.19758 -9.29465 -9.10775 -8.33752 -6.45706 1.36120 1.41063 1.49456
2.32349 2.98364 2.99687 3.07019 3.23197 3.72757 3.79732 4.05218
4.11498 4.24030 4.26707 4.29266 4.39396 4.42043 4.48659 4.54739
4.55917 4.60301 4.66583 4.75787 4.77446 4.80334 4.83054 4.91972
4.98140 5.00054 5.01471 5.03960 5.07279 5.15612 5.16435 5.28869
5.39196 5.44270 5.52755 5.95541 6.05948 6.12902 6.18835 6.26496
6.55345 6.84515 7.26426 8.78541
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.013895 B = 0.005725 C = 0.004555
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2014.604530 B = 4889.434049 C = 6146.226909
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 N -0.548 5.548
3 C 0.026 3.974
4 C 0.051 3.949
5 C -0.088 4.088
6 C 0.073 3.927
7 H 0.064 0.936
8 C -0.116 4.116
9 C -0.131 4.131
10 C 0.039 3.961
11 N -0.537 5.537
12 C 0.061 3.939
13 C 0.060 3.940
14 O -0.391 6.391
15 C 0.212 3.788
16 C -0.543 4.543
17 H 0.057 0.943
18 C 0.008 3.992
19 N -0.931 5.931
20 Si 0.979 3.021
21 H -0.266 1.266
22 H -0.272 1.272
23 H -0.266 1.266
24 H 0.008 0.992
25 H 0.078 0.922
26 H 0.080 0.920
27 H 0.071 0.929
28 H 0.078 0.922
29 H 0.002 0.998
30 H 0.074 0.926
31 H 0.027 0.973
32 H 0.051 0.949
33 H 0.084 0.916
34 H 0.068 0.932
35 H 0.096 0.904
36 H 0.082 0.918
37 H 0.080 0.920
38 H 0.052 0.948
39 H 0.053 0.947
40 H 0.068 0.932
41 H 0.080 0.920
42 H 0.033 0.967
43 H 0.042 0.958
44 H -0.021 1.021
45 H -0.019 1.019
46 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.420 -15.027 -11.997 19.978
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 N -0.272 5.272
3 C -0.122 4.122
4 C -0.077 4.077
5 C -0.126 4.126
6 C -0.035 4.035
7 H 0.082 0.918
8 C -0.154 4.154
9 C -0.169 4.169
10 C -0.089 4.089
11 N -0.262 5.262
12 C -0.067 4.067
13 C -0.018 4.018
14 O -0.311 6.311
15 C 0.137 3.863
16 C -0.580 4.580
17 H 0.075 0.925
18 C -0.191 4.191
19 N -0.570 5.570
20 Si 0.802 3.198
21 H -0.190 1.190
22 H -0.197 1.197
23 H -0.191 1.191
24 H 0.026 0.974
25 H 0.097 0.903
26 H 0.099 0.901
27 H 0.090 0.910
28 H 0.096 0.904
29 H 0.021 0.979
30 H 0.093 0.907
31 H 0.045 0.955
32 H 0.070 0.930
33 H 0.102 0.898
34 H 0.087 0.913
35 H 0.114 0.886
36 H 0.101 0.899
37 H 0.099 0.901
38 H 0.071 0.929
39 H 0.072 0.928
40 H 0.086 0.914
41 H 0.099 0.901
42 H 0.052 0.948
43 H 0.060 0.940
44 H -0.003 1.003
45 H -0.001 1.001
46 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 5.496 -14.588 -12.568 20.024
hybrid contribution -0.604 0.644 1.688 1.905
sum 4.891 -13.943 -10.880 18.350
Atomic orbital electron populations
1.22426 0.87129 1.02789 1.00220 1.62179 1.08249 1.13764 1.42976
1.22372 1.01159 0.88977 0.99740 1.22296 0.96516 0.97598 0.91247
1.21434 0.93700 1.00201 0.97275 1.22628 0.96946 0.94618 0.89313
0.91784 1.22698 0.93294 1.02708 0.96710 1.22732 0.99821 0.99430
0.94961 1.22822 0.91503 0.98763 0.95828 1.63324 1.01434 1.56403
1.05071 1.22338 0.93753 0.95013 0.95589 1.22575 0.98216 0.84907
0.96089 1.87899 1.91356 1.17458 1.34369 1.19742 0.92362 0.86593
0.87636 1.21282 1.49383 0.93447 0.93905 0.92520 1.25931 0.94309
1.03300 0.95541 1.70068 1.49380 1.31489 1.06081 0.85295 0.79241
0.77087 0.78186 1.19043 1.19701 1.19091 0.97360 0.90327 0.90134
0.91000 0.90369 0.97937 0.90714 0.95516 0.93036 0.89777 0.91324
0.88554 0.89927 0.90146 0.92929 0.92821 0.91447 0.90134 0.94832
0.94006 1.00325 1.00121 0.92052
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.57 9.57 127.69 1.22 1.79 16
2 N -0.55 -15.21 5.02 -948.82 -4.76 -19.98 16
3 C 0.03 0.76 9.32 127.69 1.19 1.95 16
4 C 0.05 1.43 3.76 86.30 0.32 1.76 16
5 C -0.09 -2.18 4.87 30.59 0.15 -2.03 16
6 C 0.07 1.68 2.58 45.38 0.12 1.80 16
7 H 0.06 1.31 7.81 -2.38 -0.02 1.29 16
8 C -0.12 -2.15 6.49 31.98 0.21 -1.94 16
9 C -0.13 -2.43 6.94 31.77 0.22 -2.21 16
10 C 0.04 1.02 6.14 86.64 0.53 1.55 16
11 N -0.54 -16.02 4.57 -860.66 -3.93 -19.96 16
12 C 0.06 1.86 4.43 86.30 0.38 2.24 16
13 C 0.06 2.34 6.04 71.98 0.44 2.77 16
14 O -0.39 -20.10 10.27 -148.98 -1.53 -21.63 16
15 C 0.21 12.46 5.69 71.24 0.41 12.87 16
16 C -0.54 -33.55 9.43 25.60 0.24 -33.31 16
17 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16
18 C 0.01 0.45 5.46 84.65 0.46 0.91 16
19 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16
20 Si 0.98 45.65 29.54 68.60 2.03 47.68 16
21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16
22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16
24 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16
25 H 0.08 1.71 8.12 -2.39 -0.02 1.69 16
26 H 0.08 1.70 8.12 -2.38 -0.02 1.68 16
27 H 0.07 2.04 6.47 -2.39 -0.02 2.02 16
28 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16
29 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16
30 H 0.07 1.84 8.06 -2.39 -0.02 1.82 16
31 H 0.03 0.97 5.98 -2.39 -0.01 0.95 16
32 H 0.05 1.50 6.55 -2.39 -0.02 1.48 16
33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16
34 H 0.07 1.39 8.06 -2.39 -0.02 1.37 16
35 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16
36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16
37 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16
38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16
39 H 0.05 1.37 6.94 -2.39 -0.02 1.35 16
40 H 0.07 1.64 7.96 -2.39 -0.02 1.62 16
41 H 0.08 2.50 5.29 -2.39 -0.01 2.49 16
42 H 0.03 1.31 7.04 -2.39 -0.02 1.30 16
43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16
44 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16
45 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16
46 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16
Total: -1.00 -69.78 356.81 -1.12 -70.90
By element:
Atomic # 1 Polarization: 11.03 SS G_CDS: 0.91 Total: 11.94 kcal
Atomic # 6 Polarization: -17.74 SS G_CDS: 5.89 Total: -11.85 kcal
Atomic # 7 Polarization: -88.62 SS G_CDS: -8.41 Total: -97.03 kcal
Atomic # 8 Polarization: -20.10 SS G_CDS: -1.53 Total: -21.63 kcal
Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal
Total: -69.78 -1.12 -70.90 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701503524.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.954 kcal
(2) G-P(sol) polarization free energy of solvation -69.784 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.830 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.119 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.903 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.949 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds