Wall clock time and date at job start Mon Mar 30 2020 05:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46896 * 110.99977 * 2 1 4 4 C 1.46905 * 110.99477 * 123.95508 * 2 1 3 5 5 C 1.53001 * 109.46749 * 170.00107 * 4 2 1 6 6 C 1.52995 * 109.47199 * 179.97438 * 5 4 2 7 7 H 1.09009 * 110.42094 * 57.31005 * 6 5 4 8 8 C 1.54904 * 110.37567 * 179.62610 * 6 5 4 9 9 C 1.55133 * 101.65430 * 155.90098 * 8 6 5 10 10 C 1.54312 * 103.02081 * 324.34387 * 9 8 6 11 11 N 1.47445 * 107.23255 * 22.28538 * 10 9 8 12 12 C 1.46901 * 111.00407 * 123.25654 * 11 10 9 13 13 C 1.53001 * 109.46904 * 69.87357 * 12 11 10 14 14 O 1.42901 * 109.47084 * 65.00410 * 13 12 11 15 15 C 1.42895 * 113.99948 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47147 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99515 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00176 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47288 * 59.99994 * 20 18 16 22 22 H 1.48503 * 109.47086 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46819 * 299.99648 * 20 18 16 24 24 H 1.09002 * 109.47262 * 296.04482 * 1 2 3 25 25 H 1.09000 * 109.46593 * 56.04551 * 1 2 3 26 26 H 1.09005 * 109.47227 * 176.04255 * 1 2 3 27 27 H 1.09000 * 109.46971 * 183.95197 * 3 2 1 28 28 H 1.08997 * 109.47270 * 303.95199 * 3 2 1 29 29 H 1.09001 * 109.47055 * 63.95951 * 3 2 1 30 30 H 1.09000 * 109.47235 * 50.00485 * 4 2 1 31 31 H 1.09001 * 109.46907 * 289.99795 * 4 2 1 32 32 H 1.09001 * 109.47329 * 59.99822 * 5 4 2 33 33 H 1.09000 * 109.47049 * 300.00075 * 5 4 2 34 34 H 1.08999 * 110.99013 * 37.80158 * 8 6 5 35 35 H 1.09006 * 110.98722 * 273.98982 * 8 6 5 36 36 H 1.09000 * 110.70647 * 205.96267 * 9 8 6 37 37 H 1.09005 * 110.86094 * 82.80053 * 9 8 6 38 38 H 1.08995 * 109.89094 * 262.88118 * 10 9 8 39 39 H 1.09001 * 110.02996 * 141.76304 * 10 9 8 40 40 H 1.09001 * 109.47133 * 309.87701 * 12 11 10 41 41 H 1.08998 * 109.47415 * 189.87588 * 12 11 10 42 42 H 1.08995 * 109.47456 * 304.99945 * 13 12 11 43 43 H 1.09003 * 109.47124 * 185.00461 * 13 12 11 44 44 H 1.09001 * 109.46798 * 60.00190 * 15 14 13 45 45 H 1.09000 * 109.47736 * 300.00432 * 15 14 13 46 46 H 0.97004 * 119.99507 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 3.5044 -0.9554 0.9704 6 6 4.0528 -1.7527 2.1555 7 1 3.5425 -2.7125 2.2370 8 6 5.5796 -1.9649 2.0026 9 6 6.0153 -2.1795 3.4759 10 6 5.0829 -1.2292 4.2562 11 7 3.9024 -0.9819 3.4082 12 6 2.6647 -1.3511 4.1081 13 6 2.4064 -0.3599 5.2446 14 8 2.1592 0.9373 4.6983 15 6 1.9042 1.9428 5.6811 16 6 1.6590 3.2631 4.9970 17 1 1.6940 3.3276 3.9195 18 6 1.3901 4.3885 5.7467 19 7 1.3480 4.3099 7.0588 20 14 1.0855 6.0248 4.8987 21 1 -0.0891 5.9045 3.9981 22 1 0.8206 7.0698 5.9200 23 1 2.2823 6.4007 4.1039 24 1 -0.3634 0.4512 0.9233 25 1 -0.3632 0.5740 -0.8525 26 1 -0.3634 -1.0253 -0.0709 27 1 3.0828 1.3432 -0.0708 28 1 1.5899 1.9163 -0.8524 29 1 1.7045 1.8723 0.9234 30 1 1.5089 -1.7407 1.1756 31 1 1.7974 -0.2248 2.0628 32 1 3.9909 0.0192 0.9324 33 1 3.7023 -1.4966 0.0452 34 1 6.0562 -1.0808 1.5792 35 1 5.7926 -2.8478 1.3998 36 1 7.0585 -1.8957 3.6145 37 1 5.8549 -3.2135 3.7814 38 1 5.5968 -0.2897 4.4593 39 1 4.7756 -1.6937 5.1931 40 1 2.7652 -2.3560 4.5182 41 1 1.8299 -1.3264 3.4076 42 1 3.2789 -0.3193 5.8966 43 1 1.5384 -0.6837 5.8189 44 1 2.7661 2.0312 6.3424 45 1 1.0257 1.6666 6.2642 46 1 1.1584 5.1017 7.5862 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701503524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:18 Heat of formation + Delta-G solvation = -65.948678 kcal Electronic energy + Delta-G solvation = -22147.051114 eV Core-core repulsion = 19070.583390 eV Total energy + Delta-G solvation = -3076.467724 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.51836 -38.46219 -38.08131 -35.02846 -33.57464 -33.06872 -29.89474 -28.59999 -28.41247 -28.27182 -25.13899 -24.50023 -23.62967 -21.68983 -21.59944 -20.76338 -18.63002 -17.73943 -17.48385 -16.83715 -16.39689 -16.28151 -16.00249 -15.69801 -15.57291 -15.23156 -14.82323 -14.36786 -14.04884 -13.73115 -13.62453 -13.46841 -13.20164 -13.09388 -12.88714 -12.81747 -12.75878 -12.62448 -12.49174 -12.21874 -12.09257 -11.99932 -11.75161 -11.52093 -11.42552 -11.34575 -11.24306 -10.87032 -10.19758 -9.29465 -9.10775 -8.33752 -6.45706 1.36120 1.41063 1.49456 2.32349 2.98364 2.99687 3.07019 3.23197 3.72757 3.79732 4.05218 4.11498 4.24030 4.26707 4.29266 4.39396 4.42043 4.48659 4.54739 4.55917 4.60301 4.66583 4.75787 4.77446 4.80334 4.83054 4.91972 4.98140 5.00054 5.01471 5.03960 5.07279 5.15612 5.16435 5.28869 5.39196 5.44270 5.52755 5.95541 6.05948 6.12902 6.18835 6.26496 6.55345 6.84515 7.26426 8.78541 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.013895 B = 0.005725 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.604530 B = 4889.434049 C = 6146.226909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.548 5.548 3 C 0.026 3.974 4 C 0.051 3.949 5 C -0.088 4.088 6 C 0.073 3.927 7 H 0.064 0.936 8 C -0.116 4.116 9 C -0.131 4.131 10 C 0.039 3.961 11 N -0.537 5.537 12 C 0.061 3.939 13 C 0.060 3.940 14 O -0.391 6.391 15 C 0.212 3.788 16 C -0.543 4.543 17 H 0.057 0.943 18 C 0.008 3.992 19 N -0.931 5.931 20 Si 0.979 3.021 21 H -0.266 1.266 22 H -0.272 1.272 23 H -0.266 1.266 24 H 0.008 0.992 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.002 0.998 30 H 0.074 0.926 31 H 0.027 0.973 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.033 0.967 43 H 0.042 0.958 44 H -0.021 1.021 45 H -0.019 1.019 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.420 -15.027 -11.997 19.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.272 5.272 3 C -0.122 4.122 4 C -0.077 4.077 5 C -0.126 4.126 6 C -0.035 4.035 7 H 0.082 0.918 8 C -0.154 4.154 9 C -0.169 4.169 10 C -0.089 4.089 11 N -0.262 5.262 12 C -0.067 4.067 13 C -0.018 4.018 14 O -0.311 6.311 15 C 0.137 3.863 16 C -0.580 4.580 17 H 0.075 0.925 18 C -0.191 4.191 19 N -0.570 5.570 20 Si 0.802 3.198 21 H -0.190 1.190 22 H -0.197 1.197 23 H -0.191 1.191 24 H 0.026 0.974 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.021 0.979 30 H 0.093 0.907 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.099 0.901 42 H 0.052 0.948 43 H 0.060 0.940 44 H -0.003 1.003 45 H -0.001 1.001 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.496 -14.588 -12.568 20.024 hybrid contribution -0.604 0.644 1.688 1.905 sum 4.891 -13.943 -10.880 18.350 Atomic orbital electron populations 1.22426 0.87129 1.02789 1.00220 1.62179 1.08249 1.13764 1.42976 1.22372 1.01159 0.88977 0.99740 1.22296 0.96516 0.97598 0.91247 1.21434 0.93700 1.00201 0.97275 1.22628 0.96946 0.94618 0.89313 0.91784 1.22698 0.93294 1.02708 0.96710 1.22732 0.99821 0.99430 0.94961 1.22822 0.91503 0.98763 0.95828 1.63324 1.01434 1.56403 1.05071 1.22338 0.93753 0.95013 0.95589 1.22575 0.98216 0.84907 0.96089 1.87899 1.91356 1.17458 1.34369 1.19742 0.92362 0.86593 0.87636 1.21282 1.49383 0.93447 0.93905 0.92520 1.25931 0.94309 1.03300 0.95541 1.70068 1.49380 1.31489 1.06081 0.85295 0.79241 0.77087 0.78186 1.19043 1.19701 1.19091 0.97360 0.90327 0.90134 0.91000 0.90369 0.97937 0.90714 0.95516 0.93036 0.89777 0.91324 0.88554 0.89927 0.90146 0.92929 0.92821 0.91447 0.90134 0.94832 0.94006 1.00325 1.00121 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.57 127.69 1.22 1.79 16 2 N -0.55 -15.21 5.02 -948.82 -4.76 -19.98 16 3 C 0.03 0.76 9.32 127.69 1.19 1.95 16 4 C 0.05 1.43 3.76 86.30 0.32 1.76 16 5 C -0.09 -2.18 4.87 30.59 0.15 -2.03 16 6 C 0.07 1.68 2.58 45.38 0.12 1.80 16 7 H 0.06 1.31 7.81 -2.38 -0.02 1.29 16 8 C -0.12 -2.15 6.49 31.98 0.21 -1.94 16 9 C -0.13 -2.43 6.94 31.77 0.22 -2.21 16 10 C 0.04 1.02 6.14 86.64 0.53 1.55 16 11 N -0.54 -16.02 4.57 -860.66 -3.93 -19.96 16 12 C 0.06 1.86 4.43 86.30 0.38 2.24 16 13 C 0.06 2.34 6.04 71.98 0.44 2.77 16 14 O -0.39 -20.10 10.27 -148.98 -1.53 -21.63 16 15 C 0.21 12.46 5.69 71.24 0.41 12.87 16 16 C -0.54 -33.55 9.43 25.60 0.24 -33.31 16 17 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 18 C 0.01 0.45 5.46 84.65 0.46 0.91 16 19 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 20 Si 0.98 45.65 29.54 68.60 2.03 47.68 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 25 H 0.08 1.71 8.12 -2.39 -0.02 1.69 16 26 H 0.08 1.70 8.12 -2.38 -0.02 1.68 16 27 H 0.07 2.04 6.47 -2.39 -0.02 2.02 16 28 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16 29 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.07 1.84 8.06 -2.39 -0.02 1.82 16 31 H 0.03 0.97 5.98 -2.39 -0.01 0.95 16 32 H 0.05 1.50 6.55 -2.39 -0.02 1.48 16 33 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.39 8.06 -2.39 -0.02 1.37 16 35 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.05 1.37 6.94 -2.39 -0.02 1.35 16 40 H 0.07 1.64 7.96 -2.39 -0.02 1.62 16 41 H 0.08 2.50 5.29 -2.39 -0.01 2.49 16 42 H 0.03 1.31 7.04 -2.39 -0.02 1.30 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 45 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 46 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -69.78 356.81 -1.12 -70.90 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.91 Total: 11.94 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 5.89 Total: -11.85 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -8.41 Total: -97.03 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -1.53 Total: -21.63 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -69.78 -1.12 -70.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701503524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.954 kcal (2) G-P(sol) polarization free energy of solvation -69.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds