Wall clock time and date at job start Mon Mar 30 2020 05:15:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31387 * 1
3 3 Si 1.86796 * 119.99969 * 2 1
4 4 H 1.48504 * 109.47074 * 270.00099 * 3 2 1
5 5 H 1.48500 * 109.47479 * 30.00100 * 3 2 1
6 6 H 1.48504 * 109.47361 * 150.00466 * 3 2 1
7 7 C 1.38854 * 119.99928 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99714 * 179.97438 * 7 2 1
9 9 O 1.34817 * 120.00014 * 359.97438 * 7 2 1
10 10 C 1.34693 * 116.99933 * 179.97438 * 9 7 2
11 11 O 1.21468 * 120.00133 * 0.02562 * 10 9 7
12 12 C 1.47983 * 119.99709 * 180.02562 * 10 9 7
13 13 C 1.39367 * 119.72135 * 179.97438 * 12 10 9
14 14 C 1.38688 * 119.03476 * 179.71976 * 13 12 10
15 15 Br 1.89101 * 120.76152 * 180.25784 * 14 13 12
16 16 C 1.38756 * 118.47404 * 0.27856 * 14 13 12
17 17 C 1.38528 * 119.35657 * 359.97438 * 16 14 13
18 18 N 1.31527 * 120.92472 * 359.97438 * 17 16 14
19 19 H 0.96998 * 119.99847 * 359.97438 * 1 2 3
20 20 H 1.08002 * 120.48619 * 0.02562 * 13 12 10
21 21 H 1.07996 * 120.32180 * 179.97438 * 16 14 13
22 22 H 1.07996 * 119.53431 * 179.97438 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3139 0.0000 0.0000
3 14 2.2478 1.6177 0.0000
4 1 2.4953 2.0464 -1.4001
5 1 1.4454 2.6527 0.7000
6 1 3.5455 1.4402 0.6999
7 6 2.0081 -1.2025 -0.0005
8 1 3.0881 -1.2025 -0.0010
9 8 1.3340 -2.3701 -0.0005
10 6 2.0676 -3.4997 -0.0016
11 8 3.2806 -3.4362 -0.0021
12 6 1.3957 -4.8182 -0.0023
13 6 2.1604 -5.9834 -0.0039
14 6 1.5160 -7.2114 0.0014
15 35 2.5054 -8.8229 0.0068
16 6 0.1285 -7.2304 0.0023
17 6 -0.5671 -6.0325 -0.0016
18 7 0.0692 -4.8814 -0.0056
19 1 -0.4850 0.8400 0.0004
20 1 3.2391 -5.9308 -0.0043
21 1 -0.4039 -8.1700 0.0060
22 1 -1.6470 -6.0439 -0.0013
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000709891149.mol2 22
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:15:17
Heat of formation + Delta-G solvation = -35.896948 kcal
Electronic energy + Delta-G solvation = -12660.263064 eV
Core-core repulsion = 10034.495825 eV
Total energy + Delta-G solvation = -2625.767239 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 270.963 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-40.18159 -38.59946 -35.27936 -33.38773 -32.28798 -31.28292 -29.98962 -26.01839
-24.10376 -23.17298 -20.57776 -17.87195 -17.45100 -16.56778 -15.82323 -15.13311
-14.86753 -14.36809 -14.29009 -13.60513 -13.15938 -12.72161 -12.03619 -11.67455
-11.56940 -11.26290 -10.53830 -10.50659 -10.47452 -9.94878 -9.58766 -9.36773
-9.09946 -9.09241 -8.68940 -6.55228 -4.15413 0.75161 1.10058 1.34409
3.02533 3.13261 3.19735 3.28420 3.75799 4.18557 4.21197 4.59195
4.87691 5.05470 5.06483 5.11972 5.63933 5.70446 5.87727 6.35601
6.78425 7.26008 7.79452 8.00479 8.58419 8.90650 9.73666 10.60595
Molecular weight = 270.96amu
Principal moments of inertia in cm(-1)
A = 0.055486 B = 0.004544 C = 0.004206
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 504.509455 B = 6160.288485 C = 6654.949163
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.841 5.841
2 C 0.042 3.958
3 Si 0.949 3.051
4 H -0.271 1.271
5 H -0.276 1.276
6 H -0.264 1.264
7 C -0.373 4.373
8 H 0.101 0.899
9 O -0.174 6.174
10 C 0.428 3.572
11 O -0.551 6.551
12 C 0.143 3.857
13 C -0.100 4.100
14 C -0.056 4.056
15 Br -0.037 7.037
16 C -0.145 4.145
17 C 0.106 3.894
18 N -0.426 5.426
19 H 0.274 0.726
20 H 0.156 0.844
21 H 0.145 0.855
22 H 0.169 0.831
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.217 -16.393 0.023 16.395
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.475 5.475
2 C -0.165 4.165
3 Si 0.772 3.228
4 H -0.196 1.196
5 H -0.201 1.201
6 H -0.188 1.188
7 C -0.449 4.449
8 H 0.119 0.881
9 O -0.078 6.078
10 C 0.275 3.725
11 O -0.450 6.450
12 C 0.006 3.994
13 C -0.122 4.122
14 C -0.143 4.143
15 Br 0.048 6.952
16 C -0.167 4.167
17 C -0.055 4.055
18 N -0.138 5.138
19 H 0.084 0.916
20 H 0.174 0.826
21 H 0.163 0.837
22 H 0.186 0.814
Dipole moment (debyes) X Y Z Total
from point charges 0.242 -15.984 0.026 15.986
hybrid contribution 0.560 0.225 -0.009 0.604
sum 0.802 -15.759 0.017 15.779
Atomic orbital electron populations
1.70010 1.06225 1.28258 1.43050 1.25505 0.95885 0.99214 0.95860
0.85591 0.79120 0.79092 0.78955 1.19614 1.20089 1.18805 1.21496
0.92774 0.79836 1.50780 0.88115 1.83981 1.38781 1.12873 1.72199
1.20106 0.85323 0.84645 0.82393 1.90652 1.14302 1.87129 1.52869
1.20582 0.89023 0.92348 0.97453 1.22018 1.02609 0.89939 0.97675
1.22025 0.94864 0.92261 1.05170 1.96725 1.73051 1.27816 1.97573
1.22276 0.92506 1.01046 1.00876 1.22992 1.00929 0.86416 0.95131
1.67912 1.09196 1.28978 1.07692 0.91602 0.82647 0.83724 0.81419
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.84 -24.36 13.67 55.49 0.76 -23.60 14
2 C 0.04 1.18 5.50 -17.51 -0.10 1.08 14
3 Si 0.95 20.75 29.55 -169.99 -5.02 15.72 14
4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 14
5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 14
6 H -0.26 -5.66 7.11 56.52 0.40 -5.26 14
7 C -0.37 -11.00 9.65 30.96 0.30 -10.70 14
8 H 0.10 2.94 6.86 -52.49 -0.36 2.58 14
9 O -0.17 -5.16 9.55 -21.43 -0.20 -5.37 14
10 C 0.43 11.22 7.89 34.72 0.27 11.49 14
11 O -0.55 -15.03 15.57 -19.24 -0.30 -15.33 14
12 C 0.14 3.06 6.75 -83.03 -0.56 2.50 14
13 C -0.10 -1.76 9.42 -39.00 -0.37 -2.13 14
14 C -0.06 -0.80 6.27 -39.22 -0.25 -1.04 14
15 Br -0.04 -0.43 33.77 -68.01 -2.30 -2.73 14
16 C -0.14 -1.82 9.90 -39.28 -0.39 -2.21 14
17 C 0.11 1.55 11.18 -17.57 -0.20 1.35 14
18 N -0.43 -8.60 10.12 -9.83 -0.10 -8.70 14
19 H 0.27 7.18 8.31 -40.82 -0.34 6.84 14
20 H 0.16 2.67 7.64 -52.49 -0.40 2.27 14
21 H 0.14 1.30 8.06 -52.49 -0.42 0.87 14
22 H 0.17 1.82 8.06 -52.49 -0.42 1.39 14
LS Contribution 239.01 15.07 3.60 3.60
Total: -1.00 -32.47 239.01 -5.59 -38.06
By element:
Atomic # 1 Polarization: -1.27 SS G_CDS: -0.74 Total: -2.01 kcal
Atomic # 6 Polarization: 1.63 SS G_CDS: -1.28 Total: 0.35 kcal
Atomic # 7 Polarization: -32.95 SS G_CDS: 0.66 Total: -32.30 kcal
Atomic # 8 Polarization: -20.19 SS G_CDS: -0.50 Total: -20.69 kcal
Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal
Atomic # 35 Polarization: -0.43 SS G_CDS: -2.30 Total: -2.73 kcal
Total LS contribution 3.60 Total: 3.60 kcal
Total: -32.47 -5.59 -38.06 kcal
The number of atoms in the molecule is 22
The average number of expansion shells was 14.00
The maximum number of expansion shells was 14
The minimum number of expansion shells was 14
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000709891149.mol2 22
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.159 kcal
(2) G-P(sol) polarization free energy of solvation -32.469 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.310 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.586 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.056 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.897 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds