Wall clock time and date at job start Mon Mar 30 2020 05:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46898 * 111.00066 * 2 1 4 4 C 1.46899 * 110.99919 * 123.95277 * 2 1 3 5 5 H 1.09000 * 109.47162 * 300.00279 * 4 2 1 6 6 C 1.53006 * 109.47163 * 60.00240 * 4 2 1 7 7 C 1.52997 * 109.47164 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47415 * 300.00027 * 7 6 4 9 9 C 1.52996 * 109.46972 * 59.99860 * 8 7 6 10 10 H 1.09001 * 109.46997 * 180.02562 * 9 8 7 11 11 N 1.46901 * 109.47379 * 60.00255 * 9 8 7 12 12 C 1.46905 * 110.99804 * 84.99429 * 11 9 8 13 13 C 1.53001 * 109.46761 * 180.02562 * 12 11 9 14 14 O 1.42901 * 109.46974 * 65.00958 * 13 12 11 15 15 C 1.42901 * 113.99706 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.46833 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00189 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99919 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99859 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00059 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47148 * 59.99765 * 20 18 16 22 22 H 1.48493 * 109.47316 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47212 * 299.99937 * 20 18 16 24 24 C 1.52997 * 109.47165 * 300.00293 * 9 8 7 25 25 H 1.09006 * 109.47593 * 296.04735 * 1 2 3 26 26 H 1.09002 * 109.47317 * 56.04702 * 1 2 3 27 27 H 1.09000 * 109.47408 * 176.04610 * 1 2 3 28 28 H 1.09007 * 109.47247 * 183.94995 * 3 2 1 29 29 H 1.08998 * 109.47470 * 303.94944 * 3 2 1 30 30 H 1.09005 * 109.47226 * 63.95798 * 3 2 1 31 31 H 1.09001 * 109.46998 * 299.99678 * 6 4 2 32 32 H 1.09000 * 109.47050 * 59.99970 * 6 4 2 33 33 H 1.09000 * 109.47140 * 60.00051 * 7 6 4 34 34 H 1.09001 * 109.47230 * 179.97438 * 7 6 4 35 35 H 1.08992 * 109.46974 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.46550 * 300.00288 * 8 7 6 37 37 H 1.00906 * 110.99840 * 321.04677 * 11 9 8 38 38 H 1.08996 * 109.47354 * 300.00351 * 12 11 9 39 39 H 1.09002 * 109.46558 * 60.00556 * 12 11 9 40 40 H 1.09001 * 109.46816 * 185.00113 * 13 12 11 41 41 H 1.08992 * 109.47190 * 305.00376 * 13 12 11 42 42 H 1.08994 * 109.47038 * 299.99053 * 15 14 13 43 43 H 1.08993 * 109.47632 * 59.99662 * 15 14 13 44 44 H 0.97000 * 119.99600 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.47140 * 299.99954 * 24 9 8 46 46 H 1.09002 * 109.47045 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7660 1.1376 5 1 1.6458 -0.3200 2.0688 6 6 1.5048 -2.2126 1.0492 7 6 2.0536 -3.0105 2.2337 8 6 3.5831 -2.9876 2.1993 9 6 4.0736 -1.5411 2.2877 10 1 5.1632 -1.5248 2.2627 11 7 3.6030 -0.9403 3.5429 12 6 4.5166 -1.2515 4.6504 13 6 3.9941 -0.6107 5.9378 14 8 2.7476 -1.2103 6.2964 15 6 2.1706 -0.6811 7.4918 16 6 0.8661 -1.3815 7.7728 17 1 0.5128 -2.1532 7.1050 18 6 0.1237 -1.0370 8.8823 19 7 0.5537 -0.0968 9.6952 20 14 -1.4935 -1.9046 9.2302 21 1 -1.2483 -3.3594 9.4001 22 1 -2.0925 -1.3557 10.4732 23 1 -2.4253 -1.6891 8.0942 24 6 3.5248 -0.7432 1.1032 25 1 -0.3634 0.4513 0.9233 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0709 28 1 3.0828 1.3432 -0.0708 29 1 1.5898 1.9163 -0.8524 30 1 1.7044 1.8723 0.9234 31 1 0.4152 -2.2288 1.0733 32 1 1.8543 -2.6585 0.1180 33 1 1.7044 -2.5647 3.1651 34 1 1.7038 -4.0409 2.1710 35 1 3.9739 -3.5564 3.0429 36 1 3.9321 -3.4334 1.2679 37 1 2.6625 -1.2373 3.7557 38 1 4.5751 -2.3320 4.7805 39 1 5.5080 -0.8584 4.4249 40 1 4.7159 -0.7660 6.7398 41 1 3.8511 0.4581 5.7796 42 1 2.8546 -0.8382 8.3258 43 1 1.9898 0.3864 7.3663 44 1 0.0316 0.1452 10.4761 45 1 3.8739 -1.1890 0.1718 46 1 3.8746 0.2872 1.1660 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715493225.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:59 Heat of formation + Delta-G solvation = -56.964194 kcal Electronic energy + Delta-G solvation = -21886.516712 eV Core-core repulsion = 18810.438585 eV Total energy + Delta-G solvation = -3076.078127 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.75348 -37.20458 -36.26276 -33.66065 -32.61695 -30.68421 -29.55969 -27.99565 -27.23162 -26.22034 -24.13506 -22.39623 -22.15817 -21.43754 -20.85285 -18.90006 -16.67727 -16.30282 -15.73217 -15.41963 -15.10073 -15.01783 -14.59574 -14.40106 -14.35237 -13.88167 -13.74079 -13.14369 -13.04061 -12.54243 -12.39524 -12.22861 -12.14555 -11.83432 -11.60748 -11.45362 -11.39667 -11.25921 -11.15918 -10.84436 -10.75956 -10.64354 -10.42123 -10.26501 -10.00447 -9.89819 -9.12715 -8.82564 -8.34527 -8.17470 -8.12395 -6.11584 -4.13522 3.30706 3.33694 3.37176 3.88836 4.33763 4.40048 4.66384 4.87030 4.93591 4.99218 5.15509 5.17141 5.24789 5.26067 5.38225 5.45276 5.48038 5.53936 5.55552 5.59859 5.64369 5.67930 5.75786 5.81924 5.86484 5.88270 5.99116 6.10296 6.12688 6.16092 6.21909 6.24267 6.29226 6.39634 6.47131 7.01514 7.07036 7.11098 7.31416 7.43592 7.72188 7.77767 8.14731 8.57465 8.99224 9.51289 10.99888 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.016865 B = 0.004426 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.843887 B = 6325.236698 C = 6963.190835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.545 5.545 3 C 0.021 3.979 4 C 0.083 3.917 5 H 0.054 0.946 6 C -0.110 4.110 7 C -0.123 4.123 8 C -0.149 4.149 9 C 0.087 3.913 10 H 0.075 0.925 11 N -0.683 5.683 12 C 0.065 3.935 13 C 0.062 3.938 14 O -0.399 6.399 15 C 0.198 3.802 16 C -0.515 4.515 17 H 0.064 0.936 18 C 0.057 3.943 19 N -0.898 5.898 20 Si 0.907 3.093 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.097 4.097 25 H 0.027 0.973 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.028 0.972 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.355 0.645 38 H 0.034 0.966 39 H 0.073 0.927 40 H 0.039 0.961 41 H 0.045 0.955 42 H 0.004 0.996 43 H 0.005 0.995 44 H 0.264 0.736 45 H 0.067 0.933 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.526 -1.449 -18.801 19.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.269 5.269 3 C -0.127 4.127 4 C -0.025 4.025 5 H 0.072 0.928 6 C -0.148 4.148 7 C -0.161 4.161 8 C -0.188 4.188 9 C -0.024 4.024 10 H 0.093 0.907 11 N -0.318 5.318 12 C -0.064 4.064 13 C -0.016 4.016 14 O -0.319 6.319 15 C 0.123 3.877 16 C -0.553 4.553 17 H 0.083 0.917 18 C -0.144 4.144 19 N -0.537 5.537 20 Si 0.734 3.266 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.135 4.135 25 H 0.046 0.954 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.178 0.822 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.022 0.978 43 H 0.023 0.977 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.814 -1.095 -19.279 20.166 hybrid contribution -1.199 -0.649 1.455 1.994 sum 4.615 -1.744 -17.824 18.494 Atomic orbital electron populations 1.22426 0.87781 1.02239 1.00408 1.62074 1.07623 1.13640 1.43531 1.22415 1.01045 0.88908 1.00322 1.21670 0.95206 0.93762 0.91859 0.92831 1.21607 1.00186 0.94412 0.98623 1.21536 0.95361 1.00279 0.98947 1.22183 0.96415 0.98186 1.01979 1.21543 0.98870 0.91429 0.90581 0.90698 1.60708 1.07113 1.62197 1.01735 1.21976 0.95778 0.98400 0.90289 1.22303 0.88082 0.96911 0.94340 1.87782 1.34271 1.63238 1.46646 1.20159 0.92916 0.93882 0.80700 1.21003 1.04312 1.20846 1.09168 0.91732 1.24939 0.98508 0.95314 0.95663 1.69955 1.39029 1.30268 1.14468 0.86415 0.82836 0.79739 0.77595 1.20040 1.21124 1.20031 1.21605 0.94179 1.00694 0.97062 0.95431 0.91792 0.91158 0.91028 0.91935 0.95374 0.92005 0.91515 0.91134 0.91715 0.91975 0.91731 0.82199 0.94804 0.90822 0.94253 0.93687 0.97849 0.97703 0.92602 0.91467 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.21 60.06 0.55 0.76 16 2 N -0.54 -6.24 4.89 -243.18 -1.19 -7.43 16 3 C 0.02 0.22 9.11 60.06 0.55 0.77 16 4 C 0.08 1.01 1.71 -67.71 -0.12 0.89 16 5 H 0.05 0.79 7.21 -51.93 -0.37 0.41 16 6 C -0.11 -1.26 4.97 -26.73 -0.13 -1.39 16 7 C -0.12 -1.49 5.67 -26.73 -0.15 -1.64 16 8 C -0.15 -1.70 5.52 -26.73 -0.15 -1.84 16 9 C 0.09 1.03 2.85 -67.72 -0.19 0.84 16 10 H 0.07 0.83 7.80 -51.93 -0.41 0.43 16 11 N -0.68 -10.09 5.77 -106.72 -0.62 -10.70 16 12 C 0.06 0.98 5.90 -3.82 -0.02 0.96 16 13 C 0.06 1.16 6.28 37.16 0.23 1.39 16 14 O -0.40 -9.54 9.85 -35.23 -0.35 -9.89 16 15 C 0.20 5.45 5.69 36.01 0.20 5.66 16 16 C -0.52 -15.16 9.43 -34.44 -0.32 -15.48 16 17 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 20 Si 0.91 21.86 29.54 -169.99 -5.02 16.84 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 C -0.10 -1.10 4.55 -26.73 -0.12 -1.22 16 25 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 27 H 0.07 0.70 6.30 -51.93 -0.33 0.38 16 28 H 0.07 0.71 6.23 -51.92 -0.32 0.38 16 29 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 30 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.70 6.40 -51.93 -0.33 0.37 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 1.02 6.26 -51.93 -0.32 0.70 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.76 7.45 -51.93 -0.39 0.37 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.36 5.96 5.12 -39.29 -0.20 5.75 16 38 H 0.03 0.52 7.44 -51.93 -0.39 0.13 16 39 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 43 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.07 0.80 6.34 -51.93 -0.33 0.47 16 LS Contribution 349.40 15.07 5.27 5.27 Total: -1.00 -30.21 349.40 -9.36 -39.57 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -8.43 Total: 1.35 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 0.23 Total: -8.76 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -1.07 Total: -44.38 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.35 Total: -9.89 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.21 -9.36 -39.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715493225.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.393 kcal (2) G-P(sol) polarization free energy of solvation -30.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds