Wall clock time and date at job start Mon Mar 30 2020 05:08:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46893 * 1
3 3 C 1.46898 * 111.00066 * 2 1
4 4 C 1.46899 * 110.99919 * 123.95277 * 2 1 3
5 5 H 1.09000 * 109.47162 * 300.00279 * 4 2 1
6 6 C 1.53006 * 109.47163 * 60.00240 * 4 2 1
7 7 C 1.52997 * 109.47164 * 179.97438 * 6 4 2
8 8 C 1.53002 * 109.47415 * 300.00027 * 7 6 4
9 9 C 1.52996 * 109.46972 * 59.99860 * 8 7 6
10 10 H 1.09001 * 109.46997 * 180.02562 * 9 8 7
11 11 N 1.46901 * 109.47379 * 60.00255 * 9 8 7
12 12 C 1.46905 * 110.99804 * 84.99429 * 11 9 8
13 13 C 1.53001 * 109.46761 * 180.02562 * 12 11 9
14 14 O 1.42901 * 109.46974 * 65.00958 * 13 12 11
15 15 C 1.42901 * 113.99706 * 179.97438 * 14 13 12
16 16 C 1.50704 * 109.46833 * 179.97438 * 15 14 13
17 17 H 1.07996 * 120.00189 * 359.97438 * 16 15 14
18 18 C 1.37877 * 119.99919 * 179.97438 * 16 15 14
19 19 N 1.31514 * 119.99859 * 0.02562 * 18 16 15
20 20 Si 1.86799 * 120.00059 * 179.97438 * 18 16 15
21 21 H 1.48501 * 109.47148 * 59.99765 * 20 18 16
22 22 H 1.48493 * 109.47316 * 179.97438 * 20 18 16
23 23 H 1.48502 * 109.47212 * 299.99937 * 20 18 16
24 24 C 1.52997 * 109.47165 * 300.00293 * 9 8 7
25 25 H 1.09006 * 109.47593 * 296.04735 * 1 2 3
26 26 H 1.09002 * 109.47317 * 56.04702 * 1 2 3
27 27 H 1.09000 * 109.47408 * 176.04610 * 1 2 3
28 28 H 1.09007 * 109.47247 * 183.94995 * 3 2 1
29 29 H 1.08998 * 109.47470 * 303.94944 * 3 2 1
30 30 H 1.09005 * 109.47226 * 63.95798 * 3 2 1
31 31 H 1.09001 * 109.46998 * 299.99678 * 6 4 2
32 32 H 1.09000 * 109.47050 * 59.99970 * 6 4 2
33 33 H 1.09000 * 109.47140 * 60.00051 * 7 6 4
34 34 H 1.09001 * 109.47230 * 179.97438 * 7 6 4
35 35 H 1.08992 * 109.46974 * 180.02562 * 8 7 6
36 36 H 1.08996 * 109.46550 * 300.00288 * 8 7 6
37 37 H 1.00906 * 110.99840 * 321.04677 * 11 9 8
38 38 H 1.08996 * 109.47354 * 300.00351 * 12 11 9
39 39 H 1.09002 * 109.46558 * 60.00556 * 12 11 9
40 40 H 1.09001 * 109.46816 * 185.00113 * 13 12 11
41 41 H 1.08992 * 109.47190 * 305.00376 * 13 12 11
42 42 H 1.08994 * 109.47038 * 299.99053 * 15 14 13
43 43 H 1.08993 * 109.47632 * 59.99662 * 15 14 13
44 44 H 0.97000 * 119.99600 * 180.02562 * 19 18 16
45 45 H 1.09000 * 109.47140 * 299.99954 * 24 9 8
46 46 H 1.09002 * 109.47045 * 180.02562 * 24 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.9953 -0.7660 1.1376
5 1 1.6458 -0.3200 2.0688
6 6 1.5048 -2.2126 1.0492
7 6 2.0536 -3.0105 2.2337
8 6 3.5831 -2.9876 2.1993
9 6 4.0736 -1.5411 2.2877
10 1 5.1632 -1.5248 2.2627
11 7 3.6030 -0.9403 3.5429
12 6 4.5166 -1.2515 4.6504
13 6 3.9941 -0.6107 5.9378
14 8 2.7476 -1.2103 6.2964
15 6 2.1706 -0.6811 7.4918
16 6 0.8661 -1.3815 7.7728
17 1 0.5128 -2.1532 7.1050
18 6 0.1237 -1.0370 8.8823
19 7 0.5537 -0.0968 9.6952
20 14 -1.4935 -1.9046 9.2302
21 1 -1.2483 -3.3594 9.4001
22 1 -2.0925 -1.3557 10.4732
23 1 -2.4253 -1.6891 8.0942
24 6 3.5248 -0.7432 1.1032
25 1 -0.3634 0.4513 0.9233
26 1 -0.3634 0.5740 -0.8524
27 1 -0.3634 -1.0252 -0.0709
28 1 3.0828 1.3432 -0.0708
29 1 1.5898 1.9163 -0.8524
30 1 1.7044 1.8723 0.9234
31 1 0.4152 -2.2288 1.0733
32 1 1.8543 -2.6585 0.1180
33 1 1.7044 -2.5647 3.1651
34 1 1.7038 -4.0409 2.1710
35 1 3.9739 -3.5564 3.0429
36 1 3.9321 -3.4334 1.2679
37 1 2.6625 -1.2373 3.7557
38 1 4.5751 -2.3320 4.7805
39 1 5.5080 -0.8584 4.4249
40 1 4.7159 -0.7660 6.7398
41 1 3.8511 0.4581 5.7796
42 1 2.8546 -0.8382 8.3258
43 1 1.9898 0.3864 7.3663
44 1 0.0316 0.1452 10.4761
45 1 3.8739 -1.1890 0.1718
46 1 3.8746 0.2872 1.1660
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000715493225.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:08:59
Heat of formation + Delta-G solvation = -56.964194 kcal
Electronic energy + Delta-G solvation = -21886.516712 eV
Core-core repulsion = 18810.438585 eV
Total energy + Delta-G solvation = -3076.078127 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-39.75348 -37.20458 -36.26276 -33.66065 -32.61695 -30.68421 -29.55969 -27.99565
-27.23162 -26.22034 -24.13506 -22.39623 -22.15817 -21.43754 -20.85285 -18.90006
-16.67727 -16.30282 -15.73217 -15.41963 -15.10073 -15.01783 -14.59574 -14.40106
-14.35237 -13.88167 -13.74079 -13.14369 -13.04061 -12.54243 -12.39524 -12.22861
-12.14555 -11.83432 -11.60748 -11.45362 -11.39667 -11.25921 -11.15918 -10.84436
-10.75956 -10.64354 -10.42123 -10.26501 -10.00447 -9.89819 -9.12715 -8.82564
-8.34527 -8.17470 -8.12395 -6.11584 -4.13522 3.30706 3.33694 3.37176
3.88836 4.33763 4.40048 4.66384 4.87030 4.93591 4.99218 5.15509
5.17141 5.24789 5.26067 5.38225 5.45276 5.48038 5.53936 5.55552
5.59859 5.64369 5.67930 5.75786 5.81924 5.86484 5.88270 5.99116
6.10296 6.12688 6.16092 6.21909 6.24267 6.29226 6.39634 6.47131
7.01514 7.07036 7.11098 7.31416 7.43592 7.72188 7.77767 8.14731
8.57465 8.99224 9.51289 10.99888
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.016865 B = 0.004426 C = 0.004020
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1659.843887 B = 6325.236698 C = 6963.190835
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.020 3.980
2 N -0.545 5.545
3 C 0.021 3.979
4 C 0.083 3.917
5 H 0.054 0.946
6 C -0.110 4.110
7 C -0.123 4.123
8 C -0.149 4.149
9 C 0.087 3.913
10 H 0.075 0.925
11 N -0.683 5.683
12 C 0.065 3.935
13 C 0.062 3.938
14 O -0.399 6.399
15 C 0.198 3.802
16 C -0.515 4.515
17 H 0.064 0.936
18 C 0.057 3.943
19 N -0.898 5.898
20 Si 0.907 3.093
21 H -0.275 1.275
22 H -0.286 1.286
23 H -0.275 1.275
24 C -0.097 4.097
25 H 0.027 0.973
26 H 0.063 0.937
27 H 0.070 0.930
28 H 0.071 0.929
29 H 0.062 0.938
30 H 0.028 0.972
31 H 0.061 0.939
32 H 0.066 0.934
33 H 0.070 0.930
34 H 0.064 0.936
35 H 0.062 0.938
36 H 0.064 0.936
37 H 0.355 0.645
38 H 0.034 0.966
39 H 0.073 0.927
40 H 0.039 0.961
41 H 0.045 0.955
42 H 0.004 0.996
43 H 0.005 0.995
44 H 0.264 0.736
45 H 0.067 0.933
46 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.526 -1.449 -18.801 19.650
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 N -0.269 5.269
3 C -0.127 4.127
4 C -0.025 4.025
5 H 0.072 0.928
6 C -0.148 4.148
7 C -0.161 4.161
8 C -0.188 4.188
9 C -0.024 4.024
10 H 0.093 0.907
11 N -0.318 5.318
12 C -0.064 4.064
13 C -0.016 4.016
14 O -0.319 6.319
15 C 0.123 3.877
16 C -0.553 4.553
17 H 0.083 0.917
18 C -0.144 4.144
19 N -0.537 5.537
20 Si 0.734 3.266
21 H -0.200 1.200
22 H -0.211 1.211
23 H -0.200 1.200
24 C -0.135 4.135
25 H 0.046 0.954
26 H 0.082 0.918
27 H 0.088 0.912
28 H 0.090 0.910
29 H 0.081 0.919
30 H 0.046 0.954
31 H 0.080 0.920
32 H 0.085 0.915
33 H 0.089 0.911
34 H 0.083 0.917
35 H 0.080 0.920
36 H 0.083 0.917
37 H 0.178 0.822
38 H 0.052 0.948
39 H 0.092 0.908
40 H 0.057 0.943
41 H 0.063 0.937
42 H 0.022 0.978
43 H 0.023 0.977
44 H 0.074 0.926
45 H 0.085 0.915
46 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges 5.814 -1.095 -19.279 20.166
hybrid contribution -1.199 -0.649 1.455 1.994
sum 4.615 -1.744 -17.824 18.494
Atomic orbital electron populations
1.22426 0.87781 1.02239 1.00408 1.62074 1.07623 1.13640 1.43531
1.22415 1.01045 0.88908 1.00322 1.21670 0.95206 0.93762 0.91859
0.92831 1.21607 1.00186 0.94412 0.98623 1.21536 0.95361 1.00279
0.98947 1.22183 0.96415 0.98186 1.01979 1.21543 0.98870 0.91429
0.90581 0.90698 1.60708 1.07113 1.62197 1.01735 1.21976 0.95778
0.98400 0.90289 1.22303 0.88082 0.96911 0.94340 1.87782 1.34271
1.63238 1.46646 1.20159 0.92916 0.93882 0.80700 1.21003 1.04312
1.20846 1.09168 0.91732 1.24939 0.98508 0.95314 0.95663 1.69955
1.39029 1.30268 1.14468 0.86415 0.82836 0.79739 0.77595 1.20040
1.21124 1.20031 1.21605 0.94179 1.00694 0.97062 0.95431 0.91792
0.91158 0.91028 0.91935 0.95374 0.92005 0.91515 0.91134 0.91715
0.91975 0.91731 0.82199 0.94804 0.90822 0.94253 0.93687 0.97849
0.97703 0.92602 0.91467 0.91293
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.21 9.21 60.06 0.55 0.76 16
2 N -0.54 -6.24 4.89 -243.18 -1.19 -7.43 16
3 C 0.02 0.22 9.11 60.06 0.55 0.77 16
4 C 0.08 1.01 1.71 -67.71 -0.12 0.89 16
5 H 0.05 0.79 7.21 -51.93 -0.37 0.41 16
6 C -0.11 -1.26 4.97 -26.73 -0.13 -1.39 16
7 C -0.12 -1.49 5.67 -26.73 -0.15 -1.64 16
8 C -0.15 -1.70 5.52 -26.73 -0.15 -1.84 16
9 C 0.09 1.03 2.85 -67.72 -0.19 0.84 16
10 H 0.07 0.83 7.80 -51.93 -0.41 0.43 16
11 N -0.68 -10.09 5.77 -106.72 -0.62 -10.70 16
12 C 0.06 0.98 5.90 -3.82 -0.02 0.96 16
13 C 0.06 1.16 6.28 37.16 0.23 1.39 16
14 O -0.40 -9.54 9.85 -35.23 -0.35 -9.89 16
15 C 0.20 5.45 5.69 36.01 0.20 5.66 16
16 C -0.52 -15.16 9.43 -34.44 -0.32 -15.48 16
17 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16
18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
19 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16
20 Si 0.91 21.86 29.54 -169.99 -5.02 16.84 16
21 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16
22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16
24 C -0.10 -1.10 4.55 -26.73 -0.12 -1.22 16
25 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16
26 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16
27 H 0.07 0.70 6.30 -51.93 -0.33 0.38 16
28 H 0.07 0.71 6.23 -51.92 -0.32 0.38 16
29 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16
30 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16
31 H 0.06 0.70 6.40 -51.93 -0.33 0.37 16
32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
33 H 0.07 1.02 6.26 -51.93 -0.32 0.70 16
34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
35 H 0.06 0.76 7.45 -51.93 -0.39 0.37 16
36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
37 H 0.36 5.96 5.12 -39.29 -0.20 5.75 16
38 H 0.03 0.52 7.44 -51.93 -0.39 0.13 16
39 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16
40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16
41 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16
42 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16
43 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16
44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
45 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
46 H 0.07 0.80 6.34 -51.93 -0.33 0.47 16
LS Contribution 349.40 15.07 5.27 5.27
Total: -1.00 -30.21 349.40 -9.36 -39.57
By element:
Atomic # 1 Polarization: 9.78 SS G_CDS: -8.43 Total: 1.35 kcal
Atomic # 6 Polarization: -8.99 SS G_CDS: 0.23 Total: -8.76 kcal
Atomic # 7 Polarization: -43.31 SS G_CDS: -1.07 Total: -44.38 kcal
Atomic # 8 Polarization: -9.54 SS G_CDS: -0.35 Total: -9.89 kcal
Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal
Total LS contribution 5.27 Total: 5.27 kcal
Total: -30.21 -9.36 -39.57 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000715493225.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.393 kcal
(2) G-P(sol) polarization free energy of solvation -30.207 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.599 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.365 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.571 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.964 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds