Wall clock time and date at job start Mon Mar 30 2020 05:08:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46893 * 1
3 3 C 1.46898 * 111.00066 * 2 1
4 4 C 1.46899 * 110.99919 * 123.95277 * 2 1 3
5 5 H 1.09000 * 109.47162 * 300.00279 * 4 2 1
6 6 C 1.53006 * 109.47163 * 60.00240 * 4 2 1
7 7 C 1.52997 * 109.47164 * 179.97438 * 6 4 2
8 8 C 1.53002 * 109.47415 * 300.00027 * 7 6 4
9 9 C 1.52996 * 109.46972 * 59.99860 * 8 7 6
10 10 H 1.09001 * 109.46997 * 180.02562 * 9 8 7
11 11 N 1.46901 * 109.47379 * 60.00255 * 9 8 7
12 12 C 1.46905 * 110.99804 * 84.99429 * 11 9 8
13 13 C 1.53001 * 109.46761 * 180.02562 * 12 11 9
14 14 O 1.42901 * 109.46974 * 65.00958 * 13 12 11
15 15 C 1.42901 * 113.99706 * 179.97438 * 14 13 12
16 16 C 1.50704 * 109.46833 * 179.97438 * 15 14 13
17 17 H 1.07996 * 120.00189 * 359.97438 * 16 15 14
18 18 C 1.37877 * 119.99919 * 179.97438 * 16 15 14
19 19 N 1.31514 * 119.99859 * 0.02562 * 18 16 15
20 20 Si 1.86799 * 120.00059 * 179.97438 * 18 16 15
21 21 H 1.48501 * 109.47148 * 59.99765 * 20 18 16
22 22 H 1.48493 * 109.47316 * 179.97438 * 20 18 16
23 23 H 1.48502 * 109.47212 * 299.99937 * 20 18 16
24 24 C 1.52997 * 109.47165 * 300.00293 * 9 8 7
25 25 H 1.09006 * 109.47593 * 296.04735 * 1 2 3
26 26 H 1.09002 * 109.47317 * 56.04702 * 1 2 3
27 27 H 1.09000 * 109.47408 * 176.04610 * 1 2 3
28 28 H 1.09007 * 109.47247 * 183.94995 * 3 2 1
29 29 H 1.08998 * 109.47470 * 303.94944 * 3 2 1
30 30 H 1.09005 * 109.47226 * 63.95798 * 3 2 1
31 31 H 1.09001 * 109.46998 * 299.99678 * 6 4 2
32 32 H 1.09000 * 109.47050 * 59.99970 * 6 4 2
33 33 H 1.09000 * 109.47140 * 60.00051 * 7 6 4
34 34 H 1.09001 * 109.47230 * 179.97438 * 7 6 4
35 35 H 1.08992 * 109.46974 * 180.02562 * 8 7 6
36 36 H 1.08996 * 109.46550 * 300.00288 * 8 7 6
37 37 H 1.00906 * 110.99840 * 321.04677 * 11 9 8
38 38 H 1.08996 * 109.47354 * 300.00351 * 12 11 9
39 39 H 1.09002 * 109.46558 * 60.00556 * 12 11 9
40 40 H 1.09001 * 109.46816 * 185.00113 * 13 12 11
41 41 H 1.08992 * 109.47190 * 305.00376 * 13 12 11
42 42 H 1.08994 * 109.47038 * 299.99053 * 15 14 13
43 43 H 1.08993 * 109.47632 * 59.99662 * 15 14 13
44 44 H 0.97000 * 119.99600 * 180.02562 * 19 18 16
45 45 H 1.09000 * 109.47140 * 299.99954 * 24 9 8
46 46 H 1.09002 * 109.47045 * 180.02562 * 24 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4689 0.0000 0.0000
3 6 1.9954 1.3714 0.0000
4 6 1.9953 -0.7660 1.1376
5 1 1.6458 -0.3200 2.0688
6 6 1.5048 -2.2126 1.0492
7 6 2.0536 -3.0105 2.2337
8 6 3.5831 -2.9876 2.1993
9 6 4.0736 -1.5411 2.2877
10 1 5.1632 -1.5248 2.2627
11 7 3.6030 -0.9403 3.5429
12 6 4.5166 -1.2515 4.6504
13 6 3.9941 -0.6107 5.9378
14 8 2.7476 -1.2103 6.2964
15 6 2.1706 -0.6811 7.4918
16 6 0.8661 -1.3815 7.7728
17 1 0.5128 -2.1532 7.1050
18 6 0.1237 -1.0370 8.8823
19 7 0.5537 -0.0968 9.6952
20 14 -1.4935 -1.9046 9.2302
21 1 -1.2483 -3.3594 9.4001
22 1 -2.0925 -1.3557 10.4732
23 1 -2.4253 -1.6891 8.0942
24 6 3.5248 -0.7432 1.1032
25 1 -0.3634 0.4513 0.9233
26 1 -0.3634 0.5740 -0.8524
27 1 -0.3634 -1.0252 -0.0709
28 1 3.0828 1.3432 -0.0708
29 1 1.5898 1.9163 -0.8524
30 1 1.7044 1.8723 0.9234
31 1 0.4152 -2.2288 1.0733
32 1 1.8543 -2.6585 0.1180
33 1 1.7044 -2.5647 3.1651
34 1 1.7038 -4.0409 2.1710
35 1 3.9739 -3.5564 3.0429
36 1 3.9321 -3.4334 1.2679
37 1 2.6625 -1.2373 3.7557
38 1 4.5751 -2.3320 4.7805
39 1 5.5080 -0.8584 4.4249
40 1 4.7159 -0.7660 6.7398
41 1 3.8511 0.4581 5.7796
42 1 2.8546 -0.8382 8.3258
43 1 1.9898 0.3864 7.3663
44 1 0.0316 0.1452 10.4761
45 1 3.8739 -1.1890 0.1718
46 1 3.8746 0.2872 1.1660
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000715493225.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:08:58
Heat of formation + Delta-G solvation = -77.706890 kcal
Electronic energy + Delta-G solvation = -21887.416183 eV
Core-core repulsion = 18810.438585 eV
Total energy + Delta-G solvation = -3076.977598 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-40.73248 -38.78557 -37.49432 -35.17210 -34.47841 -31.78327 -30.61885 -29.54700
-28.53790 -27.63664 -25.03557 -24.54707 -23.17908 -22.81293 -21.79102 -19.88924
-18.67484 -17.61488 -17.39146 -16.84593 -16.41124 -16.24401 -16.04779 -15.59222
-15.42763 -15.26081 -15.01271 -14.48039 -14.17643 -13.86425 -13.57394 -13.41419
-13.25726 -13.14680 -12.98344 -12.84958 -12.69107 -12.47432 -12.39733 -12.32372
-12.22164 -12.14807 -11.82689 -11.44672 -11.32522 -11.22167 -10.89875 -10.82522
-10.25356 -9.29615 -9.26265 -8.33959 -6.46652 1.37777 1.42412 1.50884
2.32474 2.99313 2.99868 3.19713 3.27655 3.73306 3.89225 4.04685
4.18480 4.27409 4.30505 4.32573 4.36176 4.48440 4.52779 4.56009
4.57015 4.64864 4.69942 4.73996 4.76165 4.79341 4.83503 4.92856
4.95272 5.02260 5.03468 5.11422 5.16134 5.17827 5.22341 5.31027
5.38328 5.48662 5.52200 5.93465 6.10773 6.14128 6.23241 6.45109
6.51287 6.79209 7.25269 8.78249
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.016865 B = 0.004426 C = 0.004020
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1659.843887 B = 6325.236698 C = 6963.190835
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 N -0.546 5.546
3 C 0.021 3.979
4 C 0.085 3.915
5 H 0.020 0.980
6 C -0.104 4.104
7 C -0.122 4.122
8 C -0.143 4.143
9 C 0.087 3.913
10 H 0.091 0.909
11 N -0.693 5.693
12 C 0.075 3.925
13 C 0.053 3.947
14 O -0.408 6.408
15 C 0.212 3.788
16 C -0.548 4.548
17 H 0.061 0.939
18 C 0.007 3.993
19 N -0.930 5.930
20 Si 0.982 3.018
21 H -0.264 1.264
22 H -0.274 1.274
23 H -0.266 1.266
24 C -0.090 4.090
25 H 0.011 0.989
26 H 0.080 0.920
27 H 0.075 0.925
28 H 0.078 0.922
29 H 0.078 0.922
30 H 0.011 0.989
31 H 0.058 0.942
32 H 0.079 0.921
33 H 0.039 0.961
34 H 0.072 0.928
35 H 0.053 0.947
36 H 0.086 0.914
37 H 0.341 0.659
38 H 0.033 0.967
39 H 0.105 0.895
40 H 0.047 0.953
41 H 0.039 0.961
42 H -0.015 1.015
43 H -0.018 1.018
44 H 0.271 0.729
45 H 0.083 0.917
46 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.560 -2.451 -20.368 21.255
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 N -0.269 5.269
3 C -0.127 4.127
4 C -0.023 4.023
5 H 0.038 0.962
6 C -0.141 4.141
7 C -0.160 4.160
8 C -0.182 4.182
9 C -0.023 4.023
10 H 0.109 0.891
11 N -0.326 5.326
12 C -0.054 4.054
13 C -0.024 4.024
14 O -0.328 6.328
15 C 0.137 3.863
16 C -0.585 4.585
17 H 0.080 0.920
18 C -0.191 4.191
19 N -0.570 5.570
20 Si 0.804 3.196
21 H -0.189 1.189
22 H -0.199 1.199
23 H -0.191 1.191
24 C -0.128 4.128
25 H 0.030 0.970
26 H 0.098 0.902
27 H 0.094 0.906
28 H 0.097 0.903
29 H 0.097 0.903
30 H 0.030 0.970
31 H 0.077 0.923
32 H 0.098 0.902
33 H 0.058 0.942
34 H 0.091 0.909
35 H 0.072 0.928
36 H 0.105 0.895
37 H 0.162 0.838
38 H 0.051 0.949
39 H 0.123 0.877
40 H 0.066 0.934
41 H 0.058 0.942
42 H 0.003 0.997
43 H 0.000 1.000
44 H 0.080 0.920
45 H 0.102 0.898
46 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 5.879 -2.092 -20.869 21.782
hybrid contribution -1.145 -0.278 1.907 2.241
sum 4.734 -2.371 -18.962 19.687
Atomic orbital electron populations
1.22478 0.87408 1.02754 1.00312 1.62140 1.08044 1.14039 1.42704
1.22462 1.01583 0.88468 1.00169 1.21605 0.95939 0.94059 0.90690
0.96178 1.21544 1.00014 0.93856 0.98714 1.21507 0.96192 1.00521
0.97783 1.22134 0.95551 0.97755 1.02729 1.21649 0.99739 0.91679
0.89272 0.89078 1.60746 1.06347 1.62848 1.02696 1.21940 0.96823
0.98104 0.88551 1.22628 0.86216 0.96901 0.96654 1.87753 1.36577
1.63518 1.44959 1.19774 0.92537 0.92489 0.81496 1.21335 1.05558
1.21587 1.10065 0.92030 1.25954 1.02454 0.95784 0.94933 1.70067
1.40697 1.31309 1.14884 0.85256 0.77623 0.78779 0.77903 1.18915
1.19922 1.19085 1.21555 0.93331 1.00552 0.97391 0.96995 0.90156
0.90648 0.90322 0.90340 0.97012 0.92318 0.90199 0.94200 0.90919
0.92782 0.89536 0.83782 0.94855 0.87715 0.93433 0.94225 0.99735
1.00014 0.92033 0.89842 0.91664
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.38 9.21 127.69 1.18 1.56 16
2 N -0.55 -11.91 4.89 -923.27 -4.51 -16.42 16
3 C 0.02 0.42 9.11 127.69 1.16 1.59 16
4 C 0.09 2.03 1.71 44.92 0.08 2.10 16
5 H 0.02 0.62 7.21 -2.39 -0.02 0.60 16
6 C -0.10 -2.26 4.97 30.60 0.15 -2.11 16
7 C -0.12 -2.89 5.67 30.59 0.17 -2.71 16
8 C -0.14 -3.01 5.52 30.59 0.17 -2.84 16
9 C 0.09 1.92 2.85 44.91 0.13 2.05 16
10 H 0.09 1.76 7.80 -2.39 -0.02 1.74 16
11 N -0.69 -20.30 5.77 -491.56 -2.83 -23.13 16
12 C 0.07 2.20 5.90 86.30 0.51 2.71 16
13 C 0.05 2.03 6.28 71.98 0.45 2.48 16
14 O -0.41 -20.14 9.85 -148.98 -1.47 -21.61 16
15 C 0.21 12.18 5.69 71.24 0.41 12.58 16
16 C -0.55 -33.01 9.43 25.60 0.24 -32.77 16
17 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16
18 C 0.01 0.43 5.46 84.65 0.46 0.89 16
19 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16
20 Si 0.98 44.68 29.54 68.60 2.03 46.71 16
21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16
22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16
23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16
24 C -0.09 -1.89 4.55 30.59 0.14 -1.75 16
25 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16
26 H 0.08 1.36 8.12 -2.39 -0.02 1.34 16
27 H 0.07 1.44 6.30 -2.39 -0.02 1.43 16
28 H 0.08 1.44 6.23 -2.38 -0.01 1.43 16
29 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16
30 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16
31 H 0.06 1.30 6.40 -2.39 -0.02 1.29 16
32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16
33 H 0.04 1.20 6.26 -2.39 -0.01 1.18 16
34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16
35 H 0.05 1.24 7.45 -2.39 -0.02 1.22 16
36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16
37 H 0.34 11.80 5.12 -89.69 -0.46 11.34 16
38 H 0.03 0.99 7.44 -2.39 -0.02 0.97 16
39 H 0.10 2.45 8.06 -2.39 -0.02 2.43 16
40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16
41 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16
42 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16
43 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16
44 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16
45 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16
46 H 0.06 1.42 6.34 -2.39 -0.02 1.41 16
Total: -1.00 -65.64 349.40 -0.78 -66.43
By element:
Atomic # 1 Polarization: 20.09 SS G_CDS: 0.47 Total: 20.55 kcal
Atomic # 6 Polarization: -21.47 SS G_CDS: 5.25 Total: -16.22 kcal
Atomic # 7 Polarization: -88.80 SS G_CDS: -7.06 Total: -95.87 kcal
Atomic # 8 Polarization: -20.14 SS G_CDS: -1.47 Total: -21.61 kcal
Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal
Total: -65.64 -0.78 -66.43 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000715493225.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.278 kcal
(2) G-P(sol) polarization free energy of solvation -65.644 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.922 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.785 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.429 kcal
(6) G-S(sol) free energy of system = (1) + (5) -77.707 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds