Wall clock time and date at job start Mon Mar 30 2020 05:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46898 * 111.00066 * 2 1 4 4 C 1.46899 * 110.99919 * 123.95277 * 2 1 3 5 5 H 1.09000 * 109.47162 * 300.00279 * 4 2 1 6 6 C 1.53006 * 109.47163 * 60.00240 * 4 2 1 7 7 C 1.52997 * 109.47164 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47415 * 300.00027 * 7 6 4 9 9 C 1.52996 * 109.46972 * 59.99860 * 8 7 6 10 10 H 1.09001 * 109.46997 * 180.02562 * 9 8 7 11 11 N 1.46901 * 109.47379 * 60.00255 * 9 8 7 12 12 C 1.46905 * 110.99804 * 84.99429 * 11 9 8 13 13 C 1.53001 * 109.46761 * 180.02562 * 12 11 9 14 14 O 1.42901 * 109.46974 * 65.00958 * 13 12 11 15 15 C 1.42901 * 113.99706 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.46833 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00189 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99919 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99859 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00059 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47148 * 59.99765 * 20 18 16 22 22 H 1.48493 * 109.47316 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47212 * 299.99937 * 20 18 16 24 24 C 1.52997 * 109.47165 * 300.00293 * 9 8 7 25 25 H 1.09006 * 109.47593 * 296.04735 * 1 2 3 26 26 H 1.09002 * 109.47317 * 56.04702 * 1 2 3 27 27 H 1.09000 * 109.47408 * 176.04610 * 1 2 3 28 28 H 1.09007 * 109.47247 * 183.94995 * 3 2 1 29 29 H 1.08998 * 109.47470 * 303.94944 * 3 2 1 30 30 H 1.09005 * 109.47226 * 63.95798 * 3 2 1 31 31 H 1.09001 * 109.46998 * 299.99678 * 6 4 2 32 32 H 1.09000 * 109.47050 * 59.99970 * 6 4 2 33 33 H 1.09000 * 109.47140 * 60.00051 * 7 6 4 34 34 H 1.09001 * 109.47230 * 179.97438 * 7 6 4 35 35 H 1.08992 * 109.46974 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.46550 * 300.00288 * 8 7 6 37 37 H 1.00906 * 110.99840 * 321.04677 * 11 9 8 38 38 H 1.08996 * 109.47354 * 300.00351 * 12 11 9 39 39 H 1.09002 * 109.46558 * 60.00556 * 12 11 9 40 40 H 1.09001 * 109.46816 * 185.00113 * 13 12 11 41 41 H 1.08992 * 109.47190 * 305.00376 * 13 12 11 42 42 H 1.08994 * 109.47038 * 299.99053 * 15 14 13 43 43 H 1.08993 * 109.47632 * 59.99662 * 15 14 13 44 44 H 0.97000 * 119.99600 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.47140 * 299.99954 * 24 9 8 46 46 H 1.09002 * 109.47045 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7660 1.1376 5 1 1.6458 -0.3200 2.0688 6 6 1.5048 -2.2126 1.0492 7 6 2.0536 -3.0105 2.2337 8 6 3.5831 -2.9876 2.1993 9 6 4.0736 -1.5411 2.2877 10 1 5.1632 -1.5248 2.2627 11 7 3.6030 -0.9403 3.5429 12 6 4.5166 -1.2515 4.6504 13 6 3.9941 -0.6107 5.9378 14 8 2.7476 -1.2103 6.2964 15 6 2.1706 -0.6811 7.4918 16 6 0.8661 -1.3815 7.7728 17 1 0.5128 -2.1532 7.1050 18 6 0.1237 -1.0370 8.8823 19 7 0.5537 -0.0968 9.6952 20 14 -1.4935 -1.9046 9.2302 21 1 -1.2483 -3.3594 9.4001 22 1 -2.0925 -1.3557 10.4732 23 1 -2.4253 -1.6891 8.0942 24 6 3.5248 -0.7432 1.1032 25 1 -0.3634 0.4513 0.9233 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3634 -1.0252 -0.0709 28 1 3.0828 1.3432 -0.0708 29 1 1.5898 1.9163 -0.8524 30 1 1.7044 1.8723 0.9234 31 1 0.4152 -2.2288 1.0733 32 1 1.8543 -2.6585 0.1180 33 1 1.7044 -2.5647 3.1651 34 1 1.7038 -4.0409 2.1710 35 1 3.9739 -3.5564 3.0429 36 1 3.9321 -3.4334 1.2679 37 1 2.6625 -1.2373 3.7557 38 1 4.5751 -2.3320 4.7805 39 1 5.5080 -0.8584 4.4249 40 1 4.7159 -0.7660 6.7398 41 1 3.8511 0.4581 5.7796 42 1 2.8546 -0.8382 8.3258 43 1 1.9898 0.3864 7.3663 44 1 0.0316 0.1452 10.4761 45 1 3.8739 -1.1890 0.1718 46 1 3.8746 0.2872 1.1660 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000715493225.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:58 Heat of formation + Delta-G solvation = -77.706890 kcal Electronic energy + Delta-G solvation = -21887.416183 eV Core-core repulsion = 18810.438585 eV Total energy + Delta-G solvation = -3076.977598 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73248 -38.78557 -37.49432 -35.17210 -34.47841 -31.78327 -30.61885 -29.54700 -28.53790 -27.63664 -25.03557 -24.54707 -23.17908 -22.81293 -21.79102 -19.88924 -18.67484 -17.61488 -17.39146 -16.84593 -16.41124 -16.24401 -16.04779 -15.59222 -15.42763 -15.26081 -15.01271 -14.48039 -14.17643 -13.86425 -13.57394 -13.41419 -13.25726 -13.14680 -12.98344 -12.84958 -12.69107 -12.47432 -12.39733 -12.32372 -12.22164 -12.14807 -11.82689 -11.44672 -11.32522 -11.22167 -10.89875 -10.82522 -10.25356 -9.29615 -9.26265 -8.33959 -6.46652 1.37777 1.42412 1.50884 2.32474 2.99313 2.99868 3.19713 3.27655 3.73306 3.89225 4.04685 4.18480 4.27409 4.30505 4.32573 4.36176 4.48440 4.52779 4.56009 4.57015 4.64864 4.69942 4.73996 4.76165 4.79341 4.83503 4.92856 4.95272 5.02260 5.03468 5.11422 5.16134 5.17827 5.22341 5.31027 5.38328 5.48662 5.52200 5.93465 6.10773 6.14128 6.23241 6.45109 6.51287 6.79209 7.25269 8.78249 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.016865 B = 0.004426 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.843887 B = 6325.236698 C = 6963.190835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.546 5.546 3 C 0.021 3.979 4 C 0.085 3.915 5 H 0.020 0.980 6 C -0.104 4.104 7 C -0.122 4.122 8 C -0.143 4.143 9 C 0.087 3.913 10 H 0.091 0.909 11 N -0.693 5.693 12 C 0.075 3.925 13 C 0.053 3.947 14 O -0.408 6.408 15 C 0.212 3.788 16 C -0.548 4.548 17 H 0.061 0.939 18 C 0.007 3.993 19 N -0.930 5.930 20 Si 0.982 3.018 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.266 1.266 24 C -0.090 4.090 25 H 0.011 0.989 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.011 0.989 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.086 0.914 37 H 0.341 0.659 38 H 0.033 0.967 39 H 0.105 0.895 40 H 0.047 0.953 41 H 0.039 0.961 42 H -0.015 1.015 43 H -0.018 1.018 44 H 0.271 0.729 45 H 0.083 0.917 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.560 -2.451 -20.368 21.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.269 5.269 3 C -0.127 4.127 4 C -0.023 4.023 5 H 0.038 0.962 6 C -0.141 4.141 7 C -0.160 4.160 8 C -0.182 4.182 9 C -0.023 4.023 10 H 0.109 0.891 11 N -0.326 5.326 12 C -0.054 4.054 13 C -0.024 4.024 14 O -0.328 6.328 15 C 0.137 3.863 16 C -0.585 4.585 17 H 0.080 0.920 18 C -0.191 4.191 19 N -0.570 5.570 20 Si 0.804 3.196 21 H -0.189 1.189 22 H -0.199 1.199 23 H -0.191 1.191 24 C -0.128 4.128 25 H 0.030 0.970 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.030 0.970 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.162 0.838 38 H 0.051 0.949 39 H 0.123 0.877 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.003 0.997 43 H 0.000 1.000 44 H 0.080 0.920 45 H 0.102 0.898 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.879 -2.092 -20.869 21.782 hybrid contribution -1.145 -0.278 1.907 2.241 sum 4.734 -2.371 -18.962 19.687 Atomic orbital electron populations 1.22478 0.87408 1.02754 1.00312 1.62140 1.08044 1.14039 1.42704 1.22462 1.01583 0.88468 1.00169 1.21605 0.95939 0.94059 0.90690 0.96178 1.21544 1.00014 0.93856 0.98714 1.21507 0.96192 1.00521 0.97783 1.22134 0.95551 0.97755 1.02729 1.21649 0.99739 0.91679 0.89272 0.89078 1.60746 1.06347 1.62848 1.02696 1.21940 0.96823 0.98104 0.88551 1.22628 0.86216 0.96901 0.96654 1.87753 1.36577 1.63518 1.44959 1.19774 0.92537 0.92489 0.81496 1.21335 1.05558 1.21587 1.10065 0.92030 1.25954 1.02454 0.95784 0.94933 1.70067 1.40697 1.31309 1.14884 0.85256 0.77623 0.78779 0.77903 1.18915 1.19922 1.19085 1.21555 0.93331 1.00552 0.97391 0.96995 0.90156 0.90648 0.90322 0.90340 0.97012 0.92318 0.90199 0.94200 0.90919 0.92782 0.89536 0.83782 0.94855 0.87715 0.93433 0.94225 0.99735 1.00014 0.92033 0.89842 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.21 127.69 1.18 1.56 16 2 N -0.55 -11.91 4.89 -923.27 -4.51 -16.42 16 3 C 0.02 0.42 9.11 127.69 1.16 1.59 16 4 C 0.09 2.03 1.71 44.92 0.08 2.10 16 5 H 0.02 0.62 7.21 -2.39 -0.02 0.60 16 6 C -0.10 -2.26 4.97 30.60 0.15 -2.11 16 7 C -0.12 -2.89 5.67 30.59 0.17 -2.71 16 8 C -0.14 -3.01 5.52 30.59 0.17 -2.84 16 9 C 0.09 1.92 2.85 44.91 0.13 2.05 16 10 H 0.09 1.76 7.80 -2.39 -0.02 1.74 16 11 N -0.69 -20.30 5.77 -491.56 -2.83 -23.13 16 12 C 0.07 2.20 5.90 86.30 0.51 2.71 16 13 C 0.05 2.03 6.28 71.98 0.45 2.48 16 14 O -0.41 -20.14 9.85 -148.98 -1.47 -21.61 16 15 C 0.21 12.18 5.69 71.24 0.41 12.58 16 16 C -0.55 -33.01 9.43 25.60 0.24 -32.77 16 17 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 18 C 0.01 0.43 5.46 84.65 0.46 0.89 16 19 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 20 Si 0.98 44.68 29.54 68.60 2.03 46.71 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 C -0.09 -1.89 4.55 30.59 0.14 -1.75 16 25 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 26 H 0.08 1.36 8.12 -2.39 -0.02 1.34 16 27 H 0.07 1.44 6.30 -2.39 -0.02 1.43 16 28 H 0.08 1.44 6.23 -2.38 -0.01 1.43 16 29 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 30 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 31 H 0.06 1.30 6.40 -2.39 -0.02 1.29 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.04 1.20 6.26 -2.39 -0.01 1.18 16 34 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.24 7.45 -2.39 -0.02 1.22 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.34 11.80 5.12 -89.69 -0.46 11.34 16 38 H 0.03 0.99 7.44 -2.39 -0.02 0.97 16 39 H 0.10 2.45 8.06 -2.39 -0.02 2.43 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 42 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 43 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 44 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 45 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.06 1.42 6.34 -2.39 -0.02 1.41 16 Total: -1.00 -65.64 349.40 -0.78 -66.43 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.47 Total: 20.55 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: 5.25 Total: -16.22 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -7.06 Total: -95.87 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -1.47 Total: -21.61 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -65.64 -0.78 -66.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715493225.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.278 kcal (2) G-P(sol) polarization free energy of solvation -65.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds