Wall clock time and date at job start Mon Mar 30 2020 05:00:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46902 * 1
3 3 C 1.46898 * 110.99452 * 2 1
4 4 C 1.46898 * 111.00157 * 123.95205 * 2 1 3
5 5 C 1.53006 * 109.47006 * 60.00147 * 4 2 1
6 6 C 1.52997 * 109.47127 * 179.97438 * 5 4 2
7 7 C 1.53000 * 109.47060 * 300.00449 * 6 5 4
8 8 N 1.46905 * 109.47123 * 299.99706 * 7 6 5
9 9 C 1.46901 * 111.00187 * 205.00495 * 8 7 6
10 10 C 1.52993 * 109.47164 * 180.02562 * 9 8 7
11 11 O 1.42903 * 109.47047 * 64.99606 * 10 9 8
12 12 C 1.42905 * 113.99769 * 179.97438 * 11 10 9
13 13 C 1.50693 * 109.47023 * 180.02562 * 12 11 10
14 14 H 1.08002 * 120.00517 * 0.02562 * 13 12 11
15 15 C 1.37877 * 120.00017 * 180.02562 * 13 12 11
16 16 N 1.31515 * 120.00231 * 0.02562 * 15 13 12
17 17 Si 1.86801 * 120.00307 * 179.97438 * 15 13 12
18 18 H 1.48495 * 109.47119 * 89.99817 * 17 15 13
19 19 H 1.48496 * 109.47383 * 210.00507 * 17 15 13
20 20 H 1.48504 * 109.46733 * 330.00010 * 17 15 13
21 21 C 1.52996 * 109.47328 * 60.00126 * 7 6 5
22 22 C 1.52997 * 109.47123 * 180.02562 * 4 2 1
23 23 H 1.09002 * 109.47549 * 296.04409 * 1 2 3
24 24 H 1.08994 * 109.47328 * 56.04605 * 1 2 3
25 25 H 1.09005 * 109.46967 * 176.04710 * 1 2 3
26 26 H 1.09007 * 109.46909 * 183.95377 * 3 2 1
27 27 H 1.08997 * 109.47651 * 303.95516 * 3 2 1
28 28 H 1.09002 * 109.47061 * 63.95566 * 3 2 1
29 29 H 1.09001 * 109.47062 * 300.00401 * 4 2 1
30 30 H 1.08998 * 109.46505 * 59.99663 * 5 4 2
31 31 H 1.08996 * 109.46884 * 300.00544 * 5 4 2
32 32 H 1.09002 * 109.47153 * 180.02562 * 6 5 4
33 33 H 1.09001 * 109.46832 * 60.00321 * 6 5 4
34 34 H 1.09004 * 109.46724 * 180.02562 * 7 6 5
35 35 H 1.00897 * 110.99456 * 81.04589 * 8 7 6
36 36 H 1.09005 * 109.46355 * 300.00136 * 9 8 7
37 37 H 1.09007 * 109.47046 * 59.99613 * 9 8 7
38 38 H 1.08999 * 109.47150 * 184.99600 * 10 9 8
39 39 H 1.09000 * 109.46992 * 304.99830 * 10 9 8
40 40 H 1.08997 * 109.47318 * 300.00760 * 12 11 10
41 41 H 1.09001 * 109.46609 * 60.00408 * 12 11 10
42 42 H 0.96998 * 120.00084 * 179.97438 * 16 15 13
43 43 H 1.08992 * 109.47554 * 59.99639 * 21 7 6
44 44 H 1.09004 * 109.47108 * 179.97438 * 21 7 6
45 45 H 1.09002 * 109.47045 * 60.00157 * 22 4 2
46 46 H 1.09001 * 109.47375 * 300.00082 * 22 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9953 1.3715 0.0000
4 6 1.9955 -0.7659 1.1376
5 6 1.5049 -2.2125 1.0492
6 6 2.0538 -3.0104 2.2337
7 6 3.5832 -2.9874 2.1992
8 7 4.0538 -3.5882 0.9439
9 6 5.4131 -4.1248 1.0942
10 6 5.8678 -4.7401 -0.2307
11 8 5.9732 -3.7150 -1.2207
12 6 6.3941 -4.1860 -2.5025
13 6 6.4711 -3.0274 -3.4630
14 1 6.2238 -2.0308 -3.1280
15 6 6.8573 -3.2394 -4.7695
16 7 7.1580 -4.4529 -5.1776
17 14 6.9521 -1.8033 -5.9603
18 1 8.3134 -1.2118 -5.9150
19 1 6.6656 -2.2817 -7.3366
20 1 5.9524 -0.7747 -5.5757
21 6 4.0737 -1.5409 2.2877
22 6 3.5249 -0.7426 1.1040
23 1 -0.3634 0.4512 0.9233
24 1 -0.3633 0.5739 -0.8524
25 1 -0.3633 -1.0253 -0.0708
26 1 3.0827 1.3433 -0.0709
27 1 1.5897 1.9164 -0.8524
28 1 1.7042 1.8723 0.9233
29 1 1.6459 -0.3200 2.0688
30 1 1.8544 -2.6583 0.1180
31 1 0.4154 -2.2287 1.0732
32 1 1.7047 -4.0411 2.1704
33 1 1.7046 -2.5646 3.1650
34 1 3.9742 -3.5563 3.0428
35 1 4.0090 -2.9237 0.1860
36 1 6.0928 -3.3194 1.3726
37 1 5.4180 -4.8894 1.8711
38 1 6.8390 -5.2162 -0.0958
39 1 5.1401 -5.4843 -0.5544
40 1 7.3763 -4.6504 -2.4145
41 1 5.6776 -4.9189 -2.8735
42 1 7.4294 -4.6021 -6.0969
43 1 3.7245 -1.0951 3.2189
44 1 5.1634 -1.5246 2.2636
45 1 3.8740 0.2881 1.1673
46 1 3.8748 -1.1882 0.1729
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000715500230.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:00:55
Heat of formation + Delta-G solvation = -55.427656 kcal
Electronic energy + Delta-G solvation = -21899.627330 eV
Core-core repulsion = 18823.615831 eV
Total energy + Delta-G solvation = -3076.011498 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 270.205 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-39.74236 -37.23411 -36.28266 -33.41412 -32.49275 -30.99166 -29.58118 -27.57715
-27.51116 -26.25345 -23.92149 -22.42036 -22.28226 -21.37586 -20.78386 -18.93699
-16.59512 -16.26728 -15.82359 -15.41760 -15.31870 -14.83333 -14.52186 -14.44911
-14.09822 -13.95752 -13.51395 -13.28099 -13.02388 -12.56712 -12.46824 -12.23541
-12.14296 -11.85388 -11.59525 -11.49028 -11.41555 -11.14272 -11.01760 -10.78460
-10.70785 -10.56694 -10.46302 -10.18591 -10.03917 -9.90234 -9.05848 -8.77484
-8.34173 -8.12003 -8.06301 -6.06552 -4.07861 3.33287 3.38249 3.44158
3.85867 4.38991 4.44409 4.69686 4.79512 4.98043 5.00098 5.11875
5.19775 5.26557 5.29599 5.30071 5.39755 5.46572 5.49530 5.54566
5.54897 5.59470 5.66840 5.77621 5.79945 5.85481 5.87409 6.02069
6.04772 6.15022 6.22560 6.26567 6.30490 6.33041 6.44420 6.53936
7.02545 7.08457 7.16369 7.36466 7.49126 7.79844 7.83878 8.20257
8.63088 9.05452 9.56843 11.05033
Molecular weight = 270.20amu
Principal moments of inertia in cm(-1)
A = 0.014852 B = 0.004995 C = 0.004036
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1884.831132 B = 5603.772866 C = 6936.608907
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.023 3.977
2 N -0.541 5.541
3 C 0.022 3.978
4 C 0.089 3.911
5 C -0.114 4.114
6 C -0.102 4.102
7 C 0.085 3.915
8 N -0.681 5.681
9 C 0.065 3.935
10 C 0.062 3.938
11 O -0.398 6.398
12 C 0.198 3.802
13 C -0.512 4.512
14 H 0.066 0.934
15 C 0.056 3.944
16 N -0.899 5.899
17 Si 0.906 3.094
18 H -0.280 1.280
19 H -0.285 1.285
20 H -0.271 1.271
21 C -0.147 4.147
22 C -0.119 4.119
23 H 0.020 0.980
24 H 0.065 0.935
25 H 0.072 0.928
26 H 0.074 0.926
27 H 0.066 0.934
28 H 0.020 0.980
29 H 0.033 0.967
30 H 0.084 0.916
31 H 0.058 0.942
32 H 0.070 0.930
33 H 0.056 0.944
34 H 0.072 0.928
35 H 0.359 0.641
36 H 0.032 0.968
37 H 0.073 0.927
38 H 0.038 0.962
39 H 0.046 0.954
40 H 0.003 0.997
41 H 0.006 0.994
42 H 0.263 0.737
43 H 0.060 0.940
44 H 0.064 0.936
45 H 0.062 0.938
46 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.984 6.356 16.157 20.545
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 N -0.265 5.265
3 C -0.127 4.127
4 C -0.019 4.019
5 C -0.152 4.152
6 C -0.141 4.141
7 C -0.025 4.025
8 N -0.316 5.316
9 C -0.064 4.064
10 C -0.016 4.016
11 O -0.318 6.318
12 C 0.123 3.877
13 C -0.550 4.550
14 H 0.084 0.916
15 C -0.145 4.145
16 N -0.538 5.538
17 Si 0.733 3.267
18 H -0.206 1.206
19 H -0.211 1.211
20 H -0.196 1.196
21 C -0.186 4.186
22 C -0.157 4.157
23 H 0.038 0.962
24 H 0.084 0.916
25 H 0.091 0.909
26 H 0.093 0.907
27 H 0.085 0.915
28 H 0.038 0.962
29 H 0.051 0.949
30 H 0.102 0.898
31 H 0.076 0.924
32 H 0.089 0.911
33 H 0.074 0.926
34 H 0.091 0.909
35 H 0.182 0.818
36 H 0.051 0.949
37 H 0.091 0.909
38 H 0.057 0.943
39 H 0.064 0.936
40 H 0.021 0.979
41 H 0.024 0.976
42 H 0.073 0.927
43 H 0.079 0.921
44 H 0.083 0.917
45 H 0.081 0.919
46 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -11.115 5.621 15.685 20.029
hybrid contribution 0.473 1.614 -0.013 1.682
sum -10.641 7.235 15.671 20.278
Atomic orbital electron populations
1.22417 0.87702 1.02449 0.99943 1.61960 1.07526 1.13549 1.43425
1.22437 1.01534 0.88771 0.99914 1.21660 0.95111 0.94411 0.90682
1.21600 0.99595 0.93579 1.00389 1.21488 0.94628 1.00510 0.97449
1.21538 0.95267 0.92524 0.93178 1.60671 1.23316 1.41544 1.06085
1.21973 0.89263 0.98527 0.96681 1.22298 0.98395 0.91828 0.89112
1.87790 1.89209 1.33255 1.21579 1.20162 0.93449 0.95785 0.78273
1.21047 1.45394 0.94553 0.94040 0.91627 1.24935 0.95269 0.96232
0.98024 1.69964 1.46093 1.20294 1.17484 0.86365 0.78479 0.82052
0.79782 1.20562 1.21097 1.19566 1.22160 1.00816 0.97196 0.98476
1.21656 0.94038 1.00257 0.99733 0.96193 0.91570 0.90911 0.90740
0.91523 0.96187 0.94860 0.89771 0.92379 0.91113 0.92556 0.90950
0.81827 0.94937 0.90913 0.94341 0.93622 0.97933 0.97642 0.92716
0.92082 0.91702 0.91920 0.89989
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.24 9.21 60.07 0.55 0.79 16
2 N -0.54 -6.70 4.89 -243.17 -1.19 -7.89 16
3 C 0.02 0.24 9.11 60.06 0.55 0.79 16
4 C 0.09 1.06 1.95 -67.71 -0.13 0.92 16
5 C -0.11 -1.34 4.73 -26.73 -0.13 -1.47 16
6 C -0.10 -1.11 5.64 -26.73 -0.15 -1.26 16
7 C 0.09 1.02 2.86 -67.71 -0.19 0.82 16
8 N -0.68 -10.18 5.77 -106.72 -0.62 -10.80 16
9 C 0.06 0.99 5.90 -3.83 -0.02 0.97 16
10 C 0.06 1.17 6.28 37.15 0.23 1.41 16
11 O -0.40 -9.63 9.85 -35.23 -0.35 -9.98 16
12 C 0.20 5.50 5.69 36.00 0.20 5.71 16
13 C -0.51 -15.24 9.43 -34.44 -0.32 -15.57 16
14 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16
15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16
16 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16
17 Si 0.91 22.13 29.54 -169.99 -5.02 17.11 16
18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16
19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16
20 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16
21 C -0.15 -1.69 5.52 -26.76 -0.15 -1.84 16
22 C -0.12 -1.50 4.59 -26.76 -0.12 -1.62 16
23 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16
24 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16
25 H 0.07 0.73 6.30 -51.93 -0.33 0.41 16
26 H 0.07 0.85 6.24 -51.92 -0.32 0.53 16
27 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16
28 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16
29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16
30 H 0.08 1.21 7.21 -51.93 -0.37 0.84 16
31 H 0.06 0.62 6.40 -51.93 -0.33 0.29 16
32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
34 H 0.07 0.80 7.80 -51.93 -0.40 0.40 16
35 H 0.36 6.15 5.12 -39.29 -0.20 5.95 16
36 H 0.03 0.50 7.44 -51.93 -0.39 0.12 16
37 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16
38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16
39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16
40 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16
41 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16
42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16
43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
44 H 0.06 0.79 7.45 -51.93 -0.39 0.41 16
45 H 0.06 0.75 6.35 -51.93 -0.33 0.42 16
46 H 0.08 1.28 6.26 -51.93 -0.32 0.95 16
LS Contribution 349.39 15.07 5.27 5.27
Total: -1.00 -30.78 349.39 -9.37 -40.15
By element:
Atomic # 1 Polarization: 9.87 SS G_CDS: -8.43 Total: 1.44 kcal
Atomic # 6 Polarization: -9.01 SS G_CDS: 0.22 Total: -8.79 kcal
Atomic # 7 Polarization: -44.13 SS G_CDS: -1.07 Total: -45.20 kcal
Atomic # 8 Polarization: -9.63 SS G_CDS: -0.35 Total: -9.98 kcal
Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal
Total LS contribution 5.27 Total: 5.27 kcal
Total: -30.78 -9.37 -40.15 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000715500230.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.277 kcal
(2) G-P(sol) polarization free energy of solvation -30.776 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.053 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.428 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds