Wall clock time and date at job start Mon Mar 30 2020 05:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99452 * 2 1 4 4 C 1.46898 * 111.00157 * 123.95205 * 2 1 3 5 5 C 1.53006 * 109.47006 * 60.00147 * 4 2 1 6 6 C 1.52997 * 109.47127 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.47060 * 300.00449 * 6 5 4 8 8 N 1.46905 * 109.47123 * 299.99706 * 7 6 5 9 9 C 1.46901 * 111.00187 * 205.00495 * 8 7 6 10 10 C 1.52993 * 109.47164 * 180.02562 * 9 8 7 11 11 O 1.42903 * 109.47047 * 64.99606 * 10 9 8 12 12 C 1.42905 * 113.99769 * 179.97438 * 11 10 9 13 13 C 1.50693 * 109.47023 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00517 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00017 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00231 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00307 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47119 * 89.99817 * 17 15 13 19 19 H 1.48496 * 109.47383 * 210.00507 * 17 15 13 20 20 H 1.48504 * 109.46733 * 330.00010 * 17 15 13 21 21 C 1.52996 * 109.47328 * 60.00126 * 7 6 5 22 22 C 1.52997 * 109.47123 * 180.02562 * 4 2 1 23 23 H 1.09002 * 109.47549 * 296.04409 * 1 2 3 24 24 H 1.08994 * 109.47328 * 56.04605 * 1 2 3 25 25 H 1.09005 * 109.46967 * 176.04710 * 1 2 3 26 26 H 1.09007 * 109.46909 * 183.95377 * 3 2 1 27 27 H 1.08997 * 109.47651 * 303.95516 * 3 2 1 28 28 H 1.09002 * 109.47061 * 63.95566 * 3 2 1 29 29 H 1.09001 * 109.47062 * 300.00401 * 4 2 1 30 30 H 1.08998 * 109.46505 * 59.99663 * 5 4 2 31 31 H 1.08996 * 109.46884 * 300.00544 * 5 4 2 32 32 H 1.09002 * 109.47153 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.46832 * 60.00321 * 6 5 4 34 34 H 1.09004 * 109.46724 * 180.02562 * 7 6 5 35 35 H 1.00897 * 110.99456 * 81.04589 * 8 7 6 36 36 H 1.09005 * 109.46355 * 300.00136 * 9 8 7 37 37 H 1.09007 * 109.47046 * 59.99613 * 9 8 7 38 38 H 1.08999 * 109.47150 * 184.99600 * 10 9 8 39 39 H 1.09000 * 109.46992 * 304.99830 * 10 9 8 40 40 H 1.08997 * 109.47318 * 300.00760 * 12 11 10 41 41 H 1.09001 * 109.46609 * 60.00408 * 12 11 10 42 42 H 0.96998 * 120.00084 * 179.97438 * 16 15 13 43 43 H 1.08992 * 109.47554 * 59.99639 * 21 7 6 44 44 H 1.09004 * 109.47108 * 179.97438 * 21 7 6 45 45 H 1.09002 * 109.47045 * 60.00157 * 22 4 2 46 46 H 1.09001 * 109.47375 * 300.00082 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.5049 -2.2125 1.0492 6 6 2.0538 -3.0104 2.2337 7 6 3.5832 -2.9874 2.1992 8 7 4.0538 -3.5882 0.9439 9 6 5.4131 -4.1248 1.0942 10 6 5.8678 -4.7401 -0.2307 11 8 5.9732 -3.7150 -1.2207 12 6 6.3941 -4.1860 -2.5025 13 6 6.4711 -3.0274 -3.4630 14 1 6.2238 -2.0308 -3.1280 15 6 6.8573 -3.2394 -4.7695 16 7 7.1580 -4.4529 -5.1776 17 14 6.9521 -1.8033 -5.9603 18 1 8.3134 -1.2118 -5.9150 19 1 6.6656 -2.2817 -7.3366 20 1 5.9524 -0.7747 -5.5757 21 6 4.0737 -1.5409 2.2877 22 6 3.5249 -0.7426 1.1040 23 1 -0.3634 0.4512 0.9233 24 1 -0.3633 0.5739 -0.8524 25 1 -0.3633 -1.0253 -0.0708 26 1 3.0827 1.3433 -0.0709 27 1 1.5897 1.9164 -0.8524 28 1 1.7042 1.8723 0.9233 29 1 1.6459 -0.3200 2.0688 30 1 1.8544 -2.6583 0.1180 31 1 0.4154 -2.2287 1.0732 32 1 1.7047 -4.0411 2.1704 33 1 1.7046 -2.5646 3.1650 34 1 3.9742 -3.5563 3.0428 35 1 4.0090 -2.9237 0.1860 36 1 6.0928 -3.3194 1.3726 37 1 5.4180 -4.8894 1.8711 38 1 6.8390 -5.2162 -0.0958 39 1 5.1401 -5.4843 -0.5544 40 1 7.3763 -4.6504 -2.4145 41 1 5.6776 -4.9189 -2.8735 42 1 7.4294 -4.6021 -6.0969 43 1 3.7245 -1.0951 3.2189 44 1 5.1634 -1.5246 2.2636 45 1 3.8740 0.2881 1.1673 46 1 3.8748 -1.1882 0.1729 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715500230.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:55 Heat of formation + Delta-G solvation = -55.427656 kcal Electronic energy + Delta-G solvation = -21899.627330 eV Core-core repulsion = 18823.615831 eV Total energy + Delta-G solvation = -3076.011498 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 270.205 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.74236 -37.23411 -36.28266 -33.41412 -32.49275 -30.99166 -29.58118 -27.57715 -27.51116 -26.25345 -23.92149 -22.42036 -22.28226 -21.37586 -20.78386 -18.93699 -16.59512 -16.26728 -15.82359 -15.41760 -15.31870 -14.83333 -14.52186 -14.44911 -14.09822 -13.95752 -13.51395 -13.28099 -13.02388 -12.56712 -12.46824 -12.23541 -12.14296 -11.85388 -11.59525 -11.49028 -11.41555 -11.14272 -11.01760 -10.78460 -10.70785 -10.56694 -10.46302 -10.18591 -10.03917 -9.90234 -9.05848 -8.77484 -8.34173 -8.12003 -8.06301 -6.06552 -4.07861 3.33287 3.38249 3.44158 3.85867 4.38991 4.44409 4.69686 4.79512 4.98043 5.00098 5.11875 5.19775 5.26557 5.29599 5.30071 5.39755 5.46572 5.49530 5.54566 5.54897 5.59470 5.66840 5.77621 5.79945 5.85481 5.87409 6.02069 6.04772 6.15022 6.22560 6.26567 6.30490 6.33041 6.44420 6.53936 7.02545 7.08457 7.16369 7.36466 7.49126 7.79844 7.83878 8.20257 8.63088 9.05452 9.56843 11.05033 Molecular weight = 270.20amu Principal moments of inertia in cm(-1) A = 0.014852 B = 0.004995 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.831132 B = 5603.772866 C = 6936.608907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.541 5.541 3 C 0.022 3.978 4 C 0.089 3.911 5 C -0.114 4.114 6 C -0.102 4.102 7 C 0.085 3.915 8 N -0.681 5.681 9 C 0.065 3.935 10 C 0.062 3.938 11 O -0.398 6.398 12 C 0.198 3.802 13 C -0.512 4.512 14 H 0.066 0.934 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.906 3.094 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.271 1.271 21 C -0.147 4.147 22 C -0.119 4.119 23 H 0.020 0.980 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.020 0.980 29 H 0.033 0.967 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.359 0.641 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.046 0.954 40 H 0.003 0.997 41 H 0.006 0.994 42 H 0.263 0.737 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.984 6.356 16.157 20.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.265 5.265 3 C -0.127 4.127 4 C -0.019 4.019 5 C -0.152 4.152 6 C -0.141 4.141 7 C -0.025 4.025 8 N -0.316 5.316 9 C -0.064 4.064 10 C -0.016 4.016 11 O -0.318 6.318 12 C 0.123 3.877 13 C -0.550 4.550 14 H 0.084 0.916 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.733 3.267 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.196 1.196 21 C -0.186 4.186 22 C -0.157 4.157 23 H 0.038 0.962 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.038 0.962 29 H 0.051 0.949 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.182 0.818 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.021 0.979 41 H 0.024 0.976 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.115 5.621 15.685 20.029 hybrid contribution 0.473 1.614 -0.013 1.682 sum -10.641 7.235 15.671 20.278 Atomic orbital electron populations 1.22417 0.87702 1.02449 0.99943 1.61960 1.07526 1.13549 1.43425 1.22437 1.01534 0.88771 0.99914 1.21660 0.95111 0.94411 0.90682 1.21600 0.99595 0.93579 1.00389 1.21488 0.94628 1.00510 0.97449 1.21538 0.95267 0.92524 0.93178 1.60671 1.23316 1.41544 1.06085 1.21973 0.89263 0.98527 0.96681 1.22298 0.98395 0.91828 0.89112 1.87790 1.89209 1.33255 1.21579 1.20162 0.93449 0.95785 0.78273 1.21047 1.45394 0.94553 0.94040 0.91627 1.24935 0.95269 0.96232 0.98024 1.69964 1.46093 1.20294 1.17484 0.86365 0.78479 0.82052 0.79782 1.20562 1.21097 1.19566 1.22160 1.00816 0.97196 0.98476 1.21656 0.94038 1.00257 0.99733 0.96193 0.91570 0.90911 0.90740 0.91523 0.96187 0.94860 0.89771 0.92379 0.91113 0.92556 0.90950 0.81827 0.94937 0.90913 0.94341 0.93622 0.97933 0.97642 0.92716 0.92082 0.91702 0.91920 0.89989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.21 60.07 0.55 0.79 16 2 N -0.54 -6.70 4.89 -243.17 -1.19 -7.89 16 3 C 0.02 0.24 9.11 60.06 0.55 0.79 16 4 C 0.09 1.06 1.95 -67.71 -0.13 0.92 16 5 C -0.11 -1.34 4.73 -26.73 -0.13 -1.47 16 6 C -0.10 -1.11 5.64 -26.73 -0.15 -1.26 16 7 C 0.09 1.02 2.86 -67.71 -0.19 0.82 16 8 N -0.68 -10.18 5.77 -106.72 -0.62 -10.80 16 9 C 0.06 0.99 5.90 -3.83 -0.02 0.97 16 10 C 0.06 1.17 6.28 37.15 0.23 1.41 16 11 O -0.40 -9.63 9.85 -35.23 -0.35 -9.98 16 12 C 0.20 5.50 5.69 36.00 0.20 5.71 16 13 C -0.51 -15.24 9.43 -34.44 -0.32 -15.57 16 14 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 17 Si 0.91 22.13 29.54 -169.99 -5.02 17.11 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 21 C -0.15 -1.69 5.52 -26.76 -0.15 -1.84 16 22 C -0.12 -1.50 4.59 -26.76 -0.12 -1.62 16 23 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 24 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 25 H 0.07 0.73 6.30 -51.93 -0.33 0.41 16 26 H 0.07 0.85 6.24 -51.92 -0.32 0.53 16 27 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 1.21 7.21 -51.93 -0.37 0.84 16 31 H 0.06 0.62 6.40 -51.93 -0.33 0.29 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.80 7.80 -51.93 -0.40 0.40 16 35 H 0.36 6.15 5.12 -39.29 -0.20 5.95 16 36 H 0.03 0.50 7.44 -51.93 -0.39 0.12 16 37 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 41 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.79 7.45 -51.93 -0.39 0.41 16 45 H 0.06 0.75 6.35 -51.93 -0.33 0.42 16 46 H 0.08 1.28 6.26 -51.93 -0.32 0.95 16 LS Contribution 349.39 15.07 5.27 5.27 Total: -1.00 -30.78 349.39 -9.37 -40.15 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -8.43 Total: 1.44 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 0.22 Total: -8.79 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -1.07 Total: -45.20 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.35 Total: -9.98 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.78 -9.37 -40.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715500230.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.277 kcal (2) G-P(sol) polarization free energy of solvation -30.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds